BP919312
Clone id YMU001_000123_F05
Library
Length 573
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000123_F05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TGGAAGAATTCGCGGCCGCAGGAGGCATAGGTGGGTGACACCCCCATGCCTCATTAAACT
AATTCTCAATTAACTCTACAAACTGTCTGATATCCATATAAAGTAGTTGGCCTCAACCAT
TGTCTGATCCTGAATGGTATCATAAACAGCCTCCCTCGTCCAAAAGGAACCCCATGTAAA
ACTTGCACTTTGTATATGATACTAGGAGCTCTCTCTGGACCAAGGAAAATGTGACGTCCT
CTTGACAACTGCAGGAAAAACATGTCAACACAAAGTGGCCCACTCCTCAAAGCGATATCC
GAAAATCTTCACAGACCAACCGTGAAGAATTGGGCACGCAAAATCTCACATACTACAACT
ATTGGTAATGCAAAACCTGTAAAATAGTCGAACTCCTCTGCCAACTAACGAGACTCGATT
TCCTACTCCCCCCCGATAGTGCCTACTATAAGAGGAGCTTGCTGAACTGACCTATCCTTG
GGTAACTCAGACTAATCATGAACTATCACCACCCACTGTTGGTCCTCATGCTCTACCTCT
TTGTCCAACTGCTCTGGAGCCTCCTCTCGATCC
■■Homology search results ■■ -
sp_hit_id Q8K1E0
Definition sp|Q8K1E0|STX5_MOUSE Syntaxin-5 OS=Mus musculus
Align length 48
Score (bit) 30.0
E-value 7.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919312|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_F05.
(550 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8K1E0|STX5_MOUSE Syntaxin-5 OS=Mus musculus GN=Stx5 PE=2 SV=3 30 7.7

>sp|Q8K1E0|STX5_MOUSE Syntaxin-5 OS=Mus musculus GN=Stx5 PE=2 SV=3
Length = 355

Score = 30.0 bits (66), Expect = 7.7
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3

Query: 267 KRYPKIFTDQP*RIGHAKSHILQLLVMQNL*NSRTPLPTNETRFPTPP 410
KRY TDQ +G +K+ +L + + TPLPT P+PP
Sbjct: 5 KRYGSKNTDQGVYLGLSKTQVLSPATAISSSSDSTPLPTPVALVPSPP 52


tr_hit_id Q8JHU7
Definition tr|Q8JHU7|Q8JHU7_DANRE Dystroglycan OS=Danio rerio
Align length 76
Score (bit) 34.3
E-value 4.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919312|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_F05.
(550 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q8JHU7|Q8JHU7_DANRE Dystroglycan OS=Danio rerio GN=dag1 PE=2 ... 34 4.4
tr|Q499B9|Q499B9_DANRE Dag1 protein OS=Danio rerio GN=dag1 PE=2 ... 34 4.4
tr|Q6BIY9|Q6BIY9_DEBHA DEHA2G06556p OS=Debaryomyces hansenii GN=... 34 4.4
tr|A8NFK1|A8NFK1_COPC7 Putative uncharacterized protein OS=Copri... 33 9.8

>tr|Q8JHU7|Q8JHU7_DANRE Dystroglycan OS=Danio rerio GN=dag1 PE=2
SV=1
Length = 866

Score = 34.3 bits (77), Expect = 4.4
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +3

Query: 306 IGHAKSHILQLLVMQNL*NSRTPLPT--NETRFPTPPR*CXXXXXXXXXTYPWVTQTNHE 479
I + K H+ + V + L N+ TP+P+ T +P PP T P + T+
Sbjct: 309 IANKKPHVPKR-VRRQLNNTPTPIPSLLPPTTYPEPP-----IRIVPTPTSPSIAPTSES 362

Query: 480 LSPPTVGPHALPLCPT 527
+PP GP LP+ PT
Sbjct: 363 SAPPVRGPVPLPVKPT 378


>tr|Q499B9|Q499B9_DANRE Dag1 protein OS=Danio rerio GN=dag1 PE=2
SV=1
Length = 862

Score = 34.3 bits (77), Expect = 4.4
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +3

Query: 306 IGHAKSHILQLLVMQNL*NSRTPLPT--NETRFPTPPR*CXXXXXXXXXTYPWVTQTNHE 479
I + K H+ + V + L N+ TP+P+ T +P PP T P + T+
Sbjct: 305 IANKKPHVPKR-VRRQLNNTPTPIPSLLPPTTYPEPP-----IRIVPTPTSPSIAPTSES 358

Query: 480 LSPPTVGPHALPLCPT 527
+PP GP LP+ PT
Sbjct: 359 SAPPVRGPVPLPVKPT 374


>tr|Q6BIY9|Q6BIY9_DEBHA DEHA2G06556p OS=Debaryomyces hansenii
GN=DEHA2G06556g PE=4 SV=2
Length = 468

Score = 34.3 bits (77), Expect = 4.4
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +3

Query: 234 KTCQHKVAHSSKRYPKIFTDQP*RIGHAKSHILQLLVMQNL*NSRTPLPTNE 389
KT ++K +S K+ K+F P + G++KS I L + N+ N PTNE
Sbjct: 229 KTIRNKDTNSIKKSNKVFFKAPRKAGYSKSSIPVLKPLSNVTNIELKKPTNE 280


>tr|A8NFK1|A8NFK1_COPC7 Putative uncharacterized protein
OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
9003) GN=CC1G_04284 PE=4 SV=1
Length = 686

Score = 33.1 bits (74), Expect = 9.8
Identities = 33/120 (27%), Positives = 44/120 (36%), Gaps = 4/120 (3%)
Frame = +3

Query: 192 LDQGKCDVLLTTAGK--TCQHKVAHSSKRY--PKIFTDQP*RIGHAKSHILQLLVMQNL* 359
+D+G D LL G + HK + R P+ TD P H+++ ++ L MQ
Sbjct: 523 MDRGALDQLLLHTGTLGSIYHKNPETFIRNAAPRALTDTPALNAHSRAVLIHLPRMQ--- 579

Query: 360 NSRTPLPTNETRFPTPPR*CXXXXXXXXXTYPWVTQTNHELSPPTVGPHALPLCPTALEP 539
LP PT P +H PPT G LPL P EP
Sbjct: 580 -----LPPGPINVPTGPT------------------ESHRAPPPTSGSGPLPLIPDGEEP 616