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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919321
Clone id YMU001_000123_G03
Library
Length 581
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000123_G03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GACTAGAAAAGCATAGAGCAACTTGTCATTTTAAAGTTTGATTTAAAGTCACTTTGCAAA
AGCCGCAGCCCCTGACATAACCTTCCGGTTCACCATTCTCAGAACTTTGCCCCATTCTAG
CAAACAATACCAGGCACCAACCTAAACTTACTCATTTGGTTCAAGAAGCAAATACAAGTG
GTAGCAGGAGCATGAAGTAGTAACGTCTCTCAAAAATGCTCTTTGACAAATTTGTGCATA
AAGAAGCCTTGAAGATAGTCACTACCTGCCTCGTTGACTAACTTTCATCATCTTCAGGAA
AAGCACAACAGCATGAAAGGCCCGTACAAGAAACTGCATAACTATCAACACGCATCCATC
GAACGTAAGCAGCAGCTTGGAAGACCATTCCAGAGTATTGTCTGCACTCTAAACACGTTT
CTTGCAGGTCCCCTGTAGCTCATTGACCACCTTGAGCCAAAGAGAACCAGAGAAAGAGAG
AGAGTTCATAATGTGTTCTTGAGAAGGAGAAATTACAACCCTTGAAGTTCCATTGATTAT
CTACAGTCCAGGTCTCCTGAGCTTCTTGATCGACATTTAAC
■■Homology search results ■■ -
sp_hit_id Q9SMU4
Definition sp|Q9SMU4|U496N_ARATH UPF0496 protein At3g49070 OS=Arabidopsis thaliana
Align length 74
Score (bit) 33.5
E-value 0.79
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919321|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_G03.
         (581 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SMU4|U496N_ARATH UPF0496 protein At3g49070 OS=Arabidopsis t...    33   0.79 
sp|Q84TX2|SCRL1_ORYSJ SCAR-like protein 1 OS=Oryza sativa subsp....    30   8.7  

>sp|Q9SMU4|U496N_ARATH UPF0496 protein At3g49070 OS=Arabidopsis
           thaliana GN=At3g49070 PE=2 SV=1
          Length = 416

 Score = 33.5 bits (75), Expect = 0.79
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
 Frame = +1

Query: 274 LTNFHHLQEKHNSMKGPYKKLHNYQHASIERKQQLGR---PFQSIVCTLNTFLAGPL*LI 444
           L N HHL+ K+ S+K  +   ++   A I++  ++ +   PF S    +    +G L L+
Sbjct: 172 LKNIHHLRSKYESLKPKFHSENHNSLALIDQFTEISKWFDPFISSGSRIQLIRSGCLYLL 231

Query: 445 DHLEPKRTRERERV 486
             LE +R + R ++
Sbjct: 232 KRLESRRDKTRAKL 245


>sp|Q84TX2|SCRL1_ORYSJ SCAR-like protein 1 OS=Oryza sativa subsp.
           japonica GN=Os03g0816900 PE=2 SV=2
          Length = 2097

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 268 ASLTNFHHLQEKHNSMKGPYKKLHNYQHASIERKQQLGRPFQSI 399
           ASL+N HH    H+S K   +K      +SIE    + +PF S+
Sbjct: 533 ASLSNDHHAVIAHSSDKQSSQKSSGLDGSSIESNDFIEKPFHSL 576
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919321|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_G03.
         (581 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******