NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919322
Clone id YMU001_000123_G04
Library
Length 539
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000123_G04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATTCCTTTGTCTAGCAAATGGTCTGCACAAAATGGCAGTATGTAGTCACATGAATGAAGA
GTGTTTTGAAAGGCACTACAAAAACATTTTTTTGCCACGTAAAAGTCCACAGTTCCAAAC
AGAGAGACTTACCTTAACAGGGAAGGTCCCTGCAGGTAACTTTGTGGTGAGTAGCTCCCT
CAGCCGTCACACAGCTTTGACCTTATTCGCAAGTATATCCAGCAATGGGAGTAACTCTTC
GGTCTTCAAAAGAAAGTTGGGTGTCAGCCAAAGCACAGGACGCAGGCCCTTTTTGTACTC
GCTCTCTCCACTCCCATCATTAGTAGGAGTAACCCTGCTTATTCTAACAGTCTCCTTGTT
CACAACCTTTTTGGATTCCTTTTCCTTGCGAAACAGAAATCCATCCTCTGCTCTGAAATT
TGAAGGTCGAGCATCAACAGATTTTCGTCCCCGCTGAATCTTAGCAGCTTTCTTAGCATC
ATCACTTAAAAGATTGCTTACTTTCTCGTCAACACACAAAGAGCTTCTATGAGGAGTGA
■■Homology search results ■■ -
sp_hit_id Q9HIT3
Definition sp|Q9HIT3|KCY_THEAC Cytidylate kinase OS=Thermoplasma acidophilum
Align length 29
Score (bit) 30.4
E-value 5.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919322|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_G04.
         (539 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9HIT3|KCY_THEAC Cytidylate kinase OS=Thermoplasma acidophilu...    30   5.7  
sp|P00328|ADH1S_HORSE Alcohol dehydrogenase S chain OS=Equus cab...    30   7.5  
sp|P05150|OTC_YEAST Ornithine carbamoyltransferase OS=Saccharomy...    30   9.8  

>sp|Q9HIT3|KCY_THEAC Cytidylate kinase OS=Thermoplasma acidophilum
           GN=cmk PE=3 SV=1
          Length = 188

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 125 RLTLTGKVPAGNFVVSSSLSRHTALTLFA 211
           R+T+ GK+ +G   VSS LSR T  T+++
Sbjct: 2   RITIAGKIGSGKSTVSSELSRITGYTVYS 30


>sp|P00328|ADH1S_HORSE Alcohol dehydrogenase S chain OS=Equus
           caballus PE=1 SV=3
          Length = 374

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +2

Query: 29  KMAVCSHMNEECFERHYKNIFLPRKSPQFQTERLTLTGKVPAGNFVVSSSLSRHTAL 199
           K +VC H          KN+ +PR + Q  T R T  GK P  +F+ +S+ S++T +
Sbjct: 100 KCSVCKHPEGNLC---LKNLSMPRGTMQDGTSRFTCRGK-PIHHFLGTSTFSQYTVV 152


>sp|P05150|OTC_YEAST Ornithine carbamoyltransferase OS=Saccharomyces
           cerevisiae GN=ARG3 PE=1 SV=1
          Length = 338

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 71  RHYKNIFLPRKSPQFQTERLTLTGKVPAGNFVVSSSLSR 187
           +H+KN+F   K+  FQ+  L L G+  A  F   S+ +R
Sbjct: 33  QHFKNVFKANKTNDFQSNHLKLLGRTIALIFTKRSTRTR 71
tr_hit_id B8A3B6
Definition tr|B8A3B6|B8A3B6_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 139
Score (bit) 102.0
E-value 1.0e-20
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919322|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_G04.
         (539 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8A3B6|B8A3B6_MAIZE Putative uncharacterized protein OS=Zea m...   102   1e-20
tr|Q9LRM8|Q9LRM8_ARATH Gb|AAF40458.1 OS=Arabidopsis thaliana PE=...    99   2e-19
tr|Q0WPL2|Q0WPL2_ARATH Putative uncharacterized protein At3g2421...    99   2e-19
tr|Q7XHM6|Q7XHM6_ORYSJ Putative uncharacterized protein OSJNBb00...    98   2e-19
tr|B8B5N1|B8B5N1_ORYSI Putative uncharacterized protein OS=Oryza...    98   2e-19
tr|B7FAI8|B7FAI8_ORYSJ cDNA, clone: J100075L13, full insert sequ...    98   2e-19
tr|A7QTH9|A7QTH9_VITVI Chromosome undetermined scaffold_168, who...    97   5e-19
tr|Q9MAS7|Q9MAS7_ARATH F13M7.23 protein OS=Arabidopsis thaliana ...    96   9e-19
tr|Q8LFL1|Q8LFL1_ARATH Putative uncharacterized protein OS=Arabi...    96   9e-19
tr|Q8GXW8|Q8GXW8_ARATH Putative uncharacterized protein At1g0478...    96   9e-19
tr|Q84WH9|Q84WH9_ARATH Putative uncharacterized protein At1g0478...    96   9e-19
tr|Q0D6V4|Q0D6V4_ORYSJ Os07g0436100 protein OS=Oryza sativa subs...    96   1e-18
tr|A3BJ63|A3BJ63_ORYSJ Putative uncharacterized protein OS=Oryza...    96   1e-18
tr|A5ARQ5|A5ARQ5_VITVI Putative uncharacterized protein OS=Vitis...    96   2e-18
tr|A9TP45|A9TP45_PHYPA Predicted protein OS=Physcomitrella paten...    90   9e-17
tr|A7Q851|A7Q851_VITVI Chromosome undetermined scaffold_62, whol...    84   4e-15
tr|A9RYI5|A9RYI5_PHYPA Predicted protein OS=Physcomitrella paten...    83   8e-15
tr|Q6KA74|Q6KA74_ORYSJ Os02g0810100 protein OS=Oryza sativa subs...    82   1e-14
tr|B6SY89|B6SY89_MAIZE Protein binding protein OS=Zea mays PE=2 ...    82   1e-14
tr|B4FZW3|B4FZW3_MAIZE Putative uncharacterized protein OS=Zea m...    82   1e-14
tr|A3ACI8|A3ACI8_ORYSJ Putative uncharacterized protein OS=Oryza...    82   1e-14
tr|A2XAU7|A2XAU7_ORYSI Putative uncharacterized protein OS=Oryza...    82   1e-14
tr|Q9M840|Q9M840_ARATH T27C4.12 protein OS=Arabidopsis thaliana ...    82   2e-14
tr|Q8VXV9|Q8VXV9_ARATH Putative uncharacterized protein At3g0447...    82   2e-14
tr|Q8LD34|Q8LD34_ARATH Putative uncharacterized protein (Putativ...    82   2e-14
tr|A7R061|A7R061_VITVI Chromosome chr10 scaffold_297, whole geno...    66   1e-09
tr|Q9SAA3|Q9SAA3_ARATH F25C20.11 protein OS=Arabidopsis thaliana...    64   5e-09
tr|Q94CF4|Q94CF4_ARATH Putative uncharacterized protein At1g6205...    64   7e-09
tr|O80709|O80709_ARATH F8K4.24 protein (Fragment) OS=Arabidopsis...    64   7e-09
tr|A2YLS0|A2YLS0_ORYSI Putative uncharacterized protein OS=Oryza...    63   1e-08

>tr|B8A3B6|B8A3B6_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 657

 Score =  102 bits (255), Expect = 1e-20
 Identities = 67/139 (48%), Positives = 79/139 (56%)
 Frame = -3

Query: 534 PHRSSLCVDEKVSNLLSDDAKKAAKIQRGRKSVDARPSNFRAEDGFLFRXXXXXXXXXXX 355
           P RSSLCVDEKVS+LL +    A + + GR SVD      RA+D    R           
Sbjct: 421 PPRSSLCVDEKVSDLLFESPSNA-QTRPGRHSVDV----VRADDNRRIRERDSRRYVPSA 475

Query: 354 XXVRISRVTPTNDGSGESEYKKGLRPVLWLTPNFXXXXXXXXXXXXXLANKVKAV*RLRE 175
                 +     +GS ESEYKKGLRPVLWL+PNF             LANKVKA+ RLR+
Sbjct: 476 ENGHRRK-----EGSKESEYKKGLRPVLWLSPNFPLRTEELLPLLDILANKVKAIRRLRD 530

Query: 174 LLTTKLPAGTFPVKVSLSV 118
           LLTTKLP  TFPVKV++ V
Sbjct: 531 LLTTKLPPDTFPVKVAIPV 549


>tr|Q9LRM8|Q9LRM8_ARATH Gb|AAF40458.1 OS=Arabidopsis thaliana PE=4
           SV=1
          Length = 711

 Score = 98.6 bits (244), Expect = 2e-19
 Identities = 64/139 (46%), Positives = 77/139 (55%)
 Frame = -3

Query: 534 PHRSSLCVDEKVSNLLSDDAKKAAKIQRGRKSVDARPSNFRAEDGFLFRXXXXXXXXXXX 355
           P RSSLCV+EKVSNLL +    + +I+ GR SVD                          
Sbjct: 394 PPRSSLCVNEKVSNLLGE----SNQIKPGRHSVDNE------------------------ 425

Query: 354 XXVRISRVTPTNDGSGESEYKKGLRPVLWLTPNFXXXXXXXXXXXXXLANKVKAV*RLRE 175
              R  +   ++    ESEYKKGLRPVLWL+PNF             LANKVKA+ RLRE
Sbjct: 426 -HYRKPKALVSDKTRHESEYKKGLRPVLWLSPNFPLQTEELLPLLDILANKVKAIRRLRE 484

Query: 174 LLTTKLPAGTFPVKVSLSV 118
           LLTTKLP+GTFPVKV++ V
Sbjct: 485 LLTTKLPSGTFPVKVAIPV 503


>tr|Q0WPL2|Q0WPL2_ARATH Putative uncharacterized protein At3g24210
           OS=Arabidopsis thaliana GN=At3g24210 PE=2 SV=1
          Length = 607

 Score = 98.6 bits (244), Expect = 2e-19
 Identities = 64/139 (46%), Positives = 77/139 (55%)
 Frame = -3

Query: 534 PHRSSLCVDEKVSNLLSDDAKKAAKIQRGRKSVDARPSNFRAEDGFLFRXXXXXXXXXXX 355
           P RSSLCV+EKVSNLL +    + +I+ GR SVD                          
Sbjct: 394 PPRSSLCVNEKVSNLLGE----SNQIKPGRHSVDNE------------------------ 425

Query: 354 XXVRISRVTPTNDGSGESEYKKGLRPVLWLTPNFXXXXXXXXXXXXXLANKVKAV*RLRE 175
              R  +   ++    ESEYKKGLRPVLWL+PNF             LANKVKA+ RLRE
Sbjct: 426 -HYRKPKALVSDKTRHESEYKKGLRPVLWLSPNFPLQTEELLPLLDILANKVKAIRRLRE 484

Query: 174 LLTTKLPAGTFPVKVSLSV 118
           LLTTKLP+GTFPVKV++ V
Sbjct: 485 LLTTKLPSGTFPVKVAIPV 503


>tr|Q7XHM6|Q7XHM6_ORYSJ Putative uncharacterized protein
           OSJNBb0095H08.9 OS=Oryza sativa subsp. japonica
           GN=OSJNBb0095H08.9 PE=4 SV=1
          Length = 675

 Score = 98.2 bits (243), Expect = 2e-19
 Identities = 65/140 (46%), Positives = 77/140 (55%), Gaps = 1/140 (0%)
 Frame = -3

Query: 534 PHRSSLCVDEKVSNLLSDDAKKAAKIQRGRKSVDA-RPSNFRAEDGFLFRXXXXXXXXXX 358
           P RSSLCVDEKVS++L +      + + GR SVD  R    R      +R          
Sbjct: 422 PPRSSLCVDEKVSDILIESPSNV-QTRPGRHSVDVVRGDESRRGKERDYRRPAASSECGH 480

Query: 357 XXXVRISRVTPTNDGSGESEYKKGLRPVLWLTPNFXXXXXXXXXXXXXLANKVKAV*RLR 178
                        +GS ESEYKKGLRPVLWL+PNF             LANKVKA+ RLR
Sbjct: 481 RR----------KEGSKESEYKKGLRPVLWLSPNFPLRTEELLPLLDILANKVKAIRRLR 530

Query: 177 ELLTTKLPAGTFPVKVSLSV 118
           +LLTTKLP GTFPVKV++ V
Sbjct: 531 DLLTTKLPPGTFPVKVAIPV 550


>tr|B8B5N1|B8B5N1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_25807 PE=4 SV=1
          Length = 677

 Score = 98.2 bits (243), Expect = 2e-19
 Identities = 65/140 (46%), Positives = 77/140 (55%), Gaps = 1/140 (0%)
 Frame = -3

Query: 534 PHRSSLCVDEKVSNLLSDDAKKAAKIQRGRKSVDA-RPSNFRAEDGFLFRXXXXXXXXXX 358
           P RSSLCVDEKVS++L +      + + GR SVD  R    R      +R          
Sbjct: 422 PPRSSLCVDEKVSDILIESPSNV-QTRPGRHSVDVVRGDESRRGKERDYRRPAASSECGH 480

Query: 357 XXXVRISRVTPTNDGSGESEYKKGLRPVLWLTPNFXXXXXXXXXXXXXLANKVKAV*RLR 178
                        +GS ESEYKKGLRPVLWL+PNF             LANKVKA+ RLR
Sbjct: 481 RR----------KEGSKESEYKKGLRPVLWLSPNFPLRTEELLPLLDILANKVKAIRRLR 530

Query: 177 ELLTTKLPAGTFPVKVSLSV 118
           +LLTTKLP GTFPVKV++ V
Sbjct: 531 DLLTTKLPPGTFPVKVAIPV 550


>tr|B7FAI8|B7FAI8_ORYSJ cDNA, clone: J100075L13, full insert
           sequence OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 656

 Score = 98.2 bits (243), Expect = 2e-19
 Identities = 65/140 (46%), Positives = 77/140 (55%), Gaps = 1/140 (0%)
 Frame = -3

Query: 534 PHRSSLCVDEKVSNLLSDDAKKAAKIQRGRKSVDA-RPSNFRAEDGFLFRXXXXXXXXXX 358
           P RSSLCVDEKVS++L +      + + GR SVD  R    R      +R          
Sbjct: 422 PPRSSLCVDEKVSDILIESPSNV-QTRPGRHSVDVVRGDESRRGKERDYRRPAASSECGH 480

Query: 357 XXXVRISRVTPTNDGSGESEYKKGLRPVLWLTPNFXXXXXXXXXXXXXLANKVKAV*RLR 178
                        +GS ESEYKKGLRPVLWL+PNF             LANKVKA+ RLR
Sbjct: 481 RR----------KEGSKESEYKKGLRPVLWLSPNFPLRTEELLPLLDILANKVKAIRRLR 530

Query: 177 ELLTTKLPAGTFPVKVSLSV 118
           +LLTTKLP GTFPVKV++ V
Sbjct: 531 DLLTTKLPPGTFPVKVAIPV 550


>tr|A7QTH9|A7QTH9_VITVI Chromosome undetermined scaffold_168, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00006339001 PE=4 SV=1
          Length = 652

 Score = 97.1 bits (240), Expect = 5e-19
 Identities = 65/139 (46%), Positives = 76/139 (54%)
 Frame = -3

Query: 534 PHRSSLCVDEKVSNLLSDDAKKAAKIQRGRKSVDARPSNFRAEDGFLFRXXXXXXXXXXX 355
           P RSSLCVDEKVS+LL D     +K   GR SV+      R ++    R           
Sbjct: 416 PPRSSLCVDEKVSDLLGDSPINQSK--PGRHSVEIV---VRGDEPRRGRDSKTSSSMISE 470

Query: 354 XXVRISRVTPTNDGSGESEYKKGLRPVLWLTPNFXXXXXXXXXXXXXLANKVKAV*RLRE 175
              R        DG  E+EYKKGLRP LWL+P+F             LANKVKA+ RLRE
Sbjct: 471 SGGR------RKDGGRENEYKKGLRPTLWLSPSFPLQTEELLPLLDILANKVKAIRRLRE 524

Query: 174 LLTTKLPAGTFPVKVSLSV 118
           LLTTKLP GTFPVKV++ V
Sbjct: 525 LLTTKLPMGTFPVKVAIPV 543


>tr|Q9MAS7|Q9MAS7_ARATH F13M7.23 protein OS=Arabidopsis thaliana
           GN=F13M7.23 PE=4 SV=1
          Length = 627

 Score = 96.3 bits (238), Expect = 9e-19
 Identities = 59/139 (42%), Positives = 77/139 (55%)
 Frame = -3

Query: 534 PHRSSLCVDEKVSNLLSDDAKKAAKIQRGRKSVDARPSNFRAEDGFLFRXXXXXXXXXXX 355
           P R+SLCVDEKVS+LL DD   +    RG + +  +P      +  +             
Sbjct: 378 PPRNSLCVDEKVSDLLGDDDSPS----RGGRQI--KPGRHSTVETVVRNENRGLRDSSKA 431

Query: 354 XXVRISRVTPTNDGSGESEYKKGLRPVLWLTPNFXXXXXXXXXXXXXLANKVKAV*RLRE 175
                S  +   +G+ E+EYKKGLRPVLWL+  F             LANKVKA+ RLRE
Sbjct: 432 STSEGSGSSKRKEGNKENEYKKGLRPVLWLSERFPLQTKELLPLLDILANKVKAIRRLRE 491

Query: 174 LLTTKLPAGTFPVKVSLSV 118
           L+TTKLP+GTFPVKV++ V
Sbjct: 492 LMTTKLPSGTFPVKVAIPV 510


>tr|Q8LFL1|Q8LFL1_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 376

 Score = 96.3 bits (238), Expect = 9e-19
 Identities = 59/139 (42%), Positives = 77/139 (55%)
 Frame = -3

Query: 534 PHRSSLCVDEKVSNLLSDDAKKAAKIQRGRKSVDARPSNFRAEDGFLFRXXXXXXXXXXX 355
           P R+SLCVDEKVS+LL DD   +    RG + +  +P      +  +             
Sbjct: 127 PPRNSLCVDEKVSDLLGDDDSPS----RGGRQI--KPGRHSTVETVVRNENRGLRDSSKA 180

Query: 354 XXVRISRVTPTNDGSGESEYKKGLRPVLWLTPNFXXXXXXXXXXXXXLANKVKAV*RLRE 175
                S  +   +G+ E+EYKKGLRPVLWL+  F             LANKVKA+ RLRE
Sbjct: 181 STSEGSGSSKRKEGNKENEYKKGLRPVLWLSERFPLQTKELLPLLDILANKVKAIRRLRE 240

Query: 174 LLTTKLPAGTFPVKVSLSV 118
           L+TTKLP+GTFPVKV++ V
Sbjct: 241 LMTTKLPSGTFPVKVAIPV 259


>tr|Q8GXW8|Q8GXW8_ARATH Putative uncharacterized protein
           At1g04780/F13M7_20 OS=Arabidopsis thaliana
           GN=At1g04780/F13M7_20 PE=2 SV=1
          Length = 664

 Score = 96.3 bits (238), Expect = 9e-19
 Identities = 59/139 (42%), Positives = 77/139 (55%)
 Frame = -3

Query: 534 PHRSSLCVDEKVSNLLSDDAKKAAKIQRGRKSVDARPSNFRAEDGFLFRXXXXXXXXXXX 355
           P R+SLCVDEKVS+LL DD   +    RG + +  +P      +  +             
Sbjct: 415 PPRNSLCVDEKVSDLLGDDDSPS----RGGRQI--KPGRHSTVETVVRNENRGLRDSSKA 468

Query: 354 XXVRISRVTPTNDGSGESEYKKGLRPVLWLTPNFXXXXXXXXXXXXXLANKVKAV*RLRE 175
                S  +   +G+ E+EYKKGLRPVLWL+  F             LANKVKA+ RLRE
Sbjct: 469 STSEGSGSSKRKEGNKENEYKKGLRPVLWLSERFPLQTKELLPLLDILANKVKAIRRLRE 528

Query: 174 LLTTKLPAGTFPVKVSLSV 118
           L+TTKLP+GTFPVKV++ V
Sbjct: 529 LMTTKLPSGTFPVKVAIPV 547