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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919323
Clone id YMU001_000123_G05
Library
Length 577
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000123_G05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTCTCCTGCACCTTCATTCATAGCGTCATTCACTTTGTTTGTGATCTTTGCACTCTCTCA
CTAAAGGAACGGAAGGCTCTCCCTTCCGTAAGTAAAAGGAACCCTTGAGCAAAGTTCAAC
ATTCACTTCCGCTGCACCTTACAGAGGAAGCATCCAGTGAGTACTGGAAGGGGGGCAACC
TATCTATGCTCAACCCATGCGCCTAAAACCATGATGTCATCTCCCCATAGAGACCAAAGG
CTTCTCCATGTCCCCCCATCCATCAGTGCGACCTGTCCTCCCGTGATGATCTAATGAAGG
CCCCCATATCTCAGCTCCATAGAGCAATGTAGAAGCCACCAGAGTGTCAAAGAGCCAAAG
CTTCGTTCGAGGCTCCTAAAACTGAACCTGCGAACACATCCTCTCCAATCTACACAATGC
CACATGGGCTCTAGTCAATCTAGTCTATGCTGCTCTCCTCAATGAAAATGCTCGTCCACT
AAAAACCACTCCAAGGTAAGTGTAAGCATTTGTATACTCCAATGTCTCCTGGCCGTATGT
GAATGCGGGCGCTGACCTCTTGATCCACTGTGGGGTG
■■Homology search results ■■ -
sp_hit_id P16425
Definition sp|P16425|Y2R2_DROME Putative 115 kDa protein in type-1 retrotransposable element R1DM OS=Drosophila melanogaster
Align length 87
Score (bit) 30.8
E-value 5.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919323|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_G05.
         (577 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P16425|Y2R2_DROME Putative 115 kDa protein in type-1 retrotra...    31   5.1  
sp|P36757|VL2_HPV32 Minor capsid protein L2 OS=Human papillomavi...    31   5.1  
sp|P42854|REG3G_RAT Regenerating islet-derived protein 3 gamma O...    30   6.7  
sp|Q5EF39|CRGD_MACFL Gamma-crystallin D OS=Macropus fuliginosus ...    30   8.6  

>sp|P16425|Y2R2_DROME Putative 115 kDa protein in type-1
           retrotransposable element R1DM OS=Drosophila
           melanogaster PE=4 SV=1
          Length = 1021

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
 Frame = -2

Query: 558 RSAPAFTYGQETLEYTNAYTYLGVVFS-GRAFSXXXXXXXXXXXAHV-ALCRLERMCSQV 385
           R AP   +    L Y  +  YLG+  S G  F              V AL R+ R  +  
Sbjct: 716 RRAPTVRFAGRNLPYVRSCRYLGITVSEGMKFLTHIASLRQRMTGVVGALARVLR--ADW 773

Query: 384 QF*EPRTKLWLFDTLVASTLLYGAEIW 304
            F  PR +  ++D L+A  +L+GA +W
Sbjct: 774 GF-SPRARRTIYDGLMAPCVLFGAPVW 799


>sp|P36757|VL2_HPV32 Minor capsid protein L2 OS=Human papillomavirus
           type 32 GN=L2 PE=3 SV=1
          Length = 476

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 179 PIYAQPMRLKP*CHLPIETKGFSMSPHPSVRP 274
           P+Y+ P  L+P   LP+E  G  ++ HP++ P
Sbjct: 164 PVYSDPFTLRP--SLPVEGNGRLLTSHPTIAP 193


>sp|P42854|REG3G_RAT Regenerating islet-derived protein 3 gamma
           OS=Rattus norvegicus GN=Reg3g PE=2 SV=1
          Length = 174

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 22/74 (29%), Positives = 33/74 (44%)
 Frame = -1

Query: 307 MGAFIRSSREDRSH*WMGGHGEAFGLYGEMTSWF*AHGLSIDRLPPFQYSLDASSVRCSG 128
           + + I+SS     + W+G H    G       W      + D +  F +  + SSV  SG
Sbjct: 88  VSSLIKSSGNSGQNVWIGLHDPTLGQEPNRGGW---EWSNADVMNYFNWETNPSSV--SG 142

Query: 127 SEC*TLLKGSFYLR 86
           S C TL + S +LR
Sbjct: 143 SHCGTLTRASGFLR 156


>sp|Q5EF39|CRGD_MACFL Gamma-crystallin D OS=Macropus fuliginosus
           GN=CRYGD PE=2 SV=1
          Length = 174

 Score = 30.0 bits (66), Expect = 8.6
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -3

Query: 575 PHSGSRGQRPHSHTARRHWSIQMLTLTLEWFLVDEHFH*GEQHRLD*LEPMW 420
           P+SGS   R +    R  +  QM+ LT +   V + FH  E H L+ L+  W
Sbjct: 83  PYSGSHKMRLYE---REDYKGQMMELTDDCSCVQDRFHLNEIHSLNVLDGCW 131
tr_hit_id Q2WBW5
Definition tr|Q2WBW5|Q2WBW5_PLADU Putative origin recognition complex subunit 3 protein OS=Platynereis dumerilii
Align length 81
Score (bit) 37.7
E-value 0.46
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919323|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_G05.
         (577 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2WBW5|Q2WBW5_PLADU Putative origin recognition complex subun...    38   0.46 
tr|Q9NBI4|Q9NBI4_9MUSC Reverse transcriptase (Fragment) OS=Droso...    34   5.1  
tr|Q4QQE8|Q4QQE8_SCHMA Endonuclease-reverse transcriptase OS=Sch...    34   5.1  
tr|B3N0Q4|B3N0Q4_DROAN GF19329 OS=Drosophila ananassae GN=GF1932...    34   5.1  
tr|A2TP96|A2TP96_9FLAO 1-(5-phosphoribosyl)-5-[(5-phosphoribosyl...    34   6.5  
tr|B3RIJ8|B3RIJ8_TRIAD Putative uncharacterized protein OS=Trich...    34   6.5  
tr|Q5BSE4|Q5BSE4_SCHJA SJCHGC04778 protein (Fragment) OS=Schisto...    33   8.7  

>tr|Q2WBW5|Q2WBW5_PLADU Putative origin recognition complex subunit
           3 protein OS=Platynereis dumerilii GN=orcs3 PE=4 SV=1
          Length = 966

 Score = 37.7 bits (86), Expect = 0.46
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = -2

Query: 543 FTYGQETLEYTNAYTYLGVVFSGR-AFSXXXXXXXXXXXAHVALCRLERMCSQVQF*EPR 367
           F YG + +  T+ Y YLGV+FS R A              +        +   V + +P 
Sbjct: 125 FKYGVDEIAITDNYKYLGVIFSSRGAMFKNNVSHLNEKARNAEFALSTHVKCSVGYLQPV 184

Query: 366 TKLWLFDTLVASTLLYGAEIW 304
               +FD  ++  L YG+E+W
Sbjct: 185 LAFKMFDVQISPILEYGSEVW 205


>tr|Q9NBI4|Q9NBI4_9MUSC Reverse transcriptase (Fragment)
           OS=Drosophila quinaria GN=ORF2 PE=4 SV=1
          Length = 366

 Score = 34.3 bits (77), Expect = 5.1
 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
 Frame = -2

Query: 549 PAFTYGQETLEYTNAYTYLGVVFSGRAFSXXXXXXXXXXXAHV--ALCRLERMCSQVQF* 376
           PA  +   +L+Y   Y YLG+  S R              A V  AL R+ R+   V   
Sbjct: 51  PAVRFAGASLQYVAKYRYLGITVSERMSYHAHVSSLRSRLAGVVGALARVLRVDWGV--- 107

Query: 375 EPRTKLWLFDTLVASTLLYGAEIWGPSLDHHGRTGRTDG 259
            PR K  ++  L+    ++GA +W      HG T R  G
Sbjct: 108 SPRDKRTIYSGLMVPCAIFGASVW------HGLTDRQTG 140


>tr|Q4QQE8|Q4QQE8_SCHMA Endonuclease-reverse transcriptase
            OS=Schistosoma mansoni PE=2 SV=1
          Length = 992

 Score = 34.3 bits (77), Expect = 5.1
 Identities = 25/79 (31%), Positives = 34/79 (43%)
 Frame = -2

Query: 540  TYGQETLEYTNAYTYLGVVFSGRAFSXXXXXXXXXXXAHVALCRLERMCSQVQF*EPRTK 361
            T   E LE    +TYLG +      S              A  +L+ + S  Q     TK
Sbjct: 783  TLDGEALEDVEIFTYLGSIIDEHGGSDADVRARIGKA-RAAYLQLKNIWSSKQL-STNTK 840

Query: 360  LWLFDTLVASTLLYGAEIW 304
            + +F+T V + LLYGAE W
Sbjct: 841  VRIFNTNVKTVLLYGAETW 859


>tr|B3N0Q4|B3N0Q4_DROAN GF19329 OS=Drosophila ananassae GN=GF19329
           PE=4 SV=1
          Length = 291

 Score = 34.3 bits (77), Expect = 5.1
 Identities = 21/81 (25%), Positives = 34/81 (41%)
 Frame = -2

Query: 528 ETLEYTNAYTYLGVVFSGRAFSXXXXXXXXXXXAHVALCRLERMCSQVQF*EPRTKLWLF 349
           ETL  +++  YLG+    R              A +AL    +  S      P+   WL+
Sbjct: 116 ETLVLSDSAKYLGITLD-RKLDWKLNTADRTKKASIALYACRKAVSLKWGMSPKMVRWLY 174

Query: 348 DTLVASTLLYGAEIWGPSLDH 286
             ++   L YG  +W P+LD+
Sbjct: 175 TAIIRPILFYGVVVWWPALDN 195


>tr|A2TP96|A2TP96_9FLAO
           1-(5-phosphoribosyl)-5-[(5-
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase OS=Dokdonia
           donghaensis MED134 GN=MED134_04899 PE=3 SV=1
          Length = 240

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = -3

Query: 287 ITGGQVALMDGGTWRSLWSLWGDDIMVLGAWVEHR*VA 174
           ITGG +A+ +  T++S  S +G D ++LGA   HR +A
Sbjct: 100 ITGGSIAVKNPDTFKSWLSKFGSDKIILGADAHHRKIA 137


>tr|B3RIJ8|B3RIJ8_TRIAD Putative uncharacterized protein
           OS=Trichoplax adhaerens GN=TRIADDRAFT_51343 PE=4 SV=1
          Length = 7662

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +3

Query: 246 PCPPIHQCDLSSRDDLMKAPISQLHRAM*KPPECQRAKASFEAPKTEPANTSSPIYTMPH 425
           PCPP + C  + +D ++  P +  H +     EC    + +  P T  + T++ I+  P 
Sbjct: 677 PCPPGYYCPYTDQDQVL--PCTPGHYSHGNATECTLCPSGYACPDTAVSVTNNTIFKCPE 734

Query: 426 G 428
           G
Sbjct: 735 G 735


>tr|Q5BSE4|Q5BSE4_SCHJA SJCHGC04778 protein (Fragment)
           OS=Schistosoma japonicum PE=2 SV=2
          Length = 128

 Score = 33.5 bits (75), Expect = 8.7
 Identities = 26/82 (31%), Positives = 36/82 (43%)
 Frame = -2

Query: 558 RSAPAFTYGQETLEYTNAYTYLGVVFSGRAFSXXXXXXXXXXXAHVALCRLERMCSQVQF 379
           RS       +ETLE  N +TYLG +   +  S           A  AL + + +    Q 
Sbjct: 49  RSTKPVEIDEETLEEVNTFTYLGSIIDKQGRS-NSDVKARISKARAALLQFKNIWDSKQL 107

Query: 378 *EPRTKLWLFDTLVASTLLYGA 313
                K+ LFD+ V + LLYGA
Sbjct: 108 -SSNLKMRLFDSNVKTVLLYGA 128