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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919327
Clone id YMU001_000123_G09
Library
Length 589
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000123_G09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGCATCGGTGTCATCCAGAGGCTCCACCACCTCAAGAGGCCTGCGGTCCTTCAAAGGATC
AGTGCCAGATATATTCCACTAAGGTTAGGCCCTTTTACCACAACTCCACATCTATGCTCA
GTCGCATATTTCATAATCAGGAAACGACGGAAGCTTTATCCGATCAAGTGCCGAACATAA
GATAGGGCCCTCCTCTTCGAAGTGTCTGTCAGCCCGTCTGCTTGTTACTATCCCAGTTGC
ATCATCAATGGTTGCAAAATTACACTACAAAAGCAAAACACTGGACTAACATCGGTTTAT
TGCCAACTAGAGAACTCTCTTAAACTCAATATAGATAGACACAAAGCCAAAATGTAAATG
GACTCAAGACAGATTAAACCTAACTGTCAATGAATTTTTTAAAGACTATGCTGTAAGCTA
GCCTGCCTTTCAACTTATGAGTACGCATATGTAATGAAGAAACCAGGAATACTAATTGGT
TAAATCTATAAAATACAAAATGCAAAAAGCTGTGTAACTCCTTACCTTACAAATTTAACT
AGATACACAGTTTTTGGAGGCACATCTGCTTTTGTCCCCGTTCACATTA
■■Homology search results ■■ -
sp_hit_id A5UKY4
Definition sp|A5UKY4|APGM_METS3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861)
Align length 94
Score (bit) 33.1
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919327|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_G09.
         (589 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A5UKY4|APGM_METS3 2,3-bisphosphoglycerate-independent phospho...    33   1.1  
sp|P53569|CEBPZ_MOUSE CCAAT/enhancer-binding protein zeta OS=Mus...    32   1.8  
sp|A4YIX4|APGM_METS5 2,3-bisphosphoglycerate-independent phospho...    25   4.7  
sp|Q979H8|APGM_THEVO 2,3-bisphosphoglycerate-independent phospho...    27   4.7  
sp|Q5JI21|APGM_PYRKO 2,3-bisphosphoglycerate-independent phospho...    31   5.3  
sp|Q8MJW8|CCR4_CANFA C-C chemokine receptor type 4 OS=Canis fami...    30   9.0  
sp|A6UTF2|APGM_META3 2,3-bisphosphoglycerate-independent phospho...    25   9.9  

>sp|A5UKY4|APGM_METS3 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase OS=Methanobrevibacter smithii
           (strain PS / ATCC 35061 / DSM 861) GN=apgM PE=3 SV=1
          Length = 412

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
 Frame = -2

Query: 264 CNFATIDDATGIVTSRRADRHFEEEGPILCSALDRIKLPSFPDYEICD*A*MWSCGKRA* 85
           CNF+T D+  GIVT RRA R  E    I+   L+ + L  +PD +I       S G RA 
Sbjct: 96  CNFSTADE-NGIVTDRRAGRIREGTHEIV-EVLNTMVLEDYPDIKIIF---KESTGHRAV 150

Query: 84  P*W-------NISGTDP-LKDRRPLEVVEPLDDT 7
                      +S  DP ++  +P EV+ PLDD+
Sbjct: 151 LVLRGEGLSDKVSDADPKVEGNKPKEVI-PLDDS 183


>sp|P53569|CEBPZ_MOUSE CCAAT/enhancer-binding protein zeta OS=Mus
           musculus GN=Cebpz PE=2 SV=2
          Length = 1052

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = +1

Query: 97  TTTPHLCSVAYFIIRKRRKLYPIKCRT*DRALLFEVSVSPSACYYPSCIINGCKITLQKQ 276
           T   HL  V   ++RK   +  + C   +R LLF  ++SP A YY  C +N   ++ ++ 
Sbjct: 400 TKASHLLEV---LLRKHPNMKGVVCGEIER-LLFRSNISPKAQYYAICFLNQMVLSHEES 455

Query: 277 ---NTGLTSVYCQLENSLK 324
              N  +T  +C     +K
Sbjct: 456 ELANKLITLYFCFFRTCIK 474


>sp|A4YIX4|APGM_METS5 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase OS=Metallosphaera sedula (strain
           ATCC 51363 / DSM 5348) GN=apgM PE=3 SV=1
          Length = 413

 Score = 25.0 bits (53), Expect(2) = 4.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 261 NFATIDDATGIVTSRRADRHFEEEGPILCSALDRIK 154
           NFAT+D    +V  RRA R  EE   ++    D+I+
Sbjct: 100 NFATVDSNL-VVIDRRAGRKIEEAEDLVKELNDKIQ 134



 Score = 24.6 bits (52), Expect(2) = 4.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 128 YATEHRCGVVVKGPNLS 78
           + TEHR  VV+ G NLS
Sbjct: 145 HGTEHRVSVVLSGDNLS 161


>sp|Q979H8|APGM_THEVO 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase OS=Thermoplasma volcanium
           GN=apgM PE=3 SV=1
          Length = 406

 Score = 26.9 bits (58), Expect(2) = 4.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 134 MKYATEHRCGVVVKGPNLS 78
           +K   EHR  +VV GPNLS
Sbjct: 140 VKSGVEHRAALVVSGPNLS 158



 Score = 22.7 bits (47), Expect(2) = 4.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 72  ISGTDPLKDRRPLEVVEPLD 13
           IS +DP  + +P E + PLD
Sbjct: 161 ISDSDPHSEGKPPEPIRPLD 180


>sp|Q5JI21|APGM_PYRKO 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase OS=Pyrococcus kodakaraensis
           GN=apgM PE=3 SV=1
          Length = 411

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -2

Query: 261 NFATIDDATGIVTSRRADRHFEEEGPILCSAL-DRIKLP 148
           NFATI++  GI+T RRA R   EE   L  A+ + +KLP
Sbjct: 100 NFATIEN--GIITDRRAGRISTEEAHELAKAVQENVKLP 136


>sp|Q8MJW8|CCR4_CANFA C-C chemokine receptor type 4 OS=Canis
           familiaris GN=CCR4 PE=2 SV=1
          Length = 360

 Score = 30.0 bits (66), Expect = 9.0
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 418 LACLSTYEYAYVMKKPGILIG*IYKIQNAKSCVTPYLTNLTRYTV 552
           +  L+T+  A +   PG+L    Y  +N   C T Y  N TR+ V
Sbjct: 156 ITSLATWSVAVLASLPGLLFSTCYTERNHTYCKTKYSRNSTRWKV 200


>sp|A6UTF2|APGM_META3 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase OS=Methanococcus aeolicus
           (strain Nankai-3 / ATCC BAA-1280) GN=apgM PE=3 SV=1
          Length = 406

 Score = 25.4 bits (54), Expect(2) = 9.9
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = -2

Query: 264 CNFATIDDATGIVTSRRADRHFEEEGPILCSALDRIKL 151
           CNFAT+DD   I+  RRA R    E   L  A+D +K+
Sbjct: 94  CNFATVDDNLTII-DRRAGRIKNTEE--LEKAIDGLKV 128



 Score = 23.1 bits (48), Expect(2) = 9.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 140 LIMKYATEHRCGVVVKGPNLS 78
           +I K +  +R  +V++GPNLS
Sbjct: 133 VIFKQSGGYRAALVLRGPNLS 153
tr_hit_id A7PHN3
Definition tr|A7PHN3|A7PHN3_VITVI Chromosome chr17 scaffold_16, whole genome shotgun sequence OS=Vitis vinifera
Align length 90
Score (bit) 100.0
E-value 6.0e-20
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919327|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_G09.
         (589 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PHN3|A7PHN3_VITVI Chromosome chr17 scaffold_16, whole genom...   100   6e-20
tr|A5AYJ4|A5AYJ4_VITVI Putative uncharacterized protein OS=Vitis...   100   6e-20
tr|Q2QPB6|Q2QPB6_ORYSJ cDNA clone:J033097K23, full insert sequen...   100   1e-19
tr|A2ZL97|A2ZL97_ORYSI Putative uncharacterized protein OS=Oryza...   100   1e-19
tr|Q8L816|Q8L816_ARATH Putative uncharacterized protein At4g0952...    96   1e-18
tr|A9S3E7|A9S3E7_PHYPA Predicted protein OS=Physcomitrella paten...    95   3e-18
tr|A7PAJ1|A7PAJ1_VITVI Chromosome chr14 scaffold_9, whole genome...    94   4e-18
tr|Q9LHK9|Q9LHK9_ARATH Phosphonopyruvate decarboxylase-like prot...    94   6e-18
tr|Q9M0P1|Q9M0P1_ARATH Putative uncharacterized protein AT4g0952...    93   1e-17
tr|A8J5D8|A8J5D8_CHLRE Predicted protein (Fragment) OS=Chlamydom...    81   5e-14
tr|Q86AW2|Q86AW2_DICDI Similar to Arabidopsis thaliana (Mouse-ea...    74   5e-12
tr|Q4D422|Q4D422_TRYCR 2,3-bisphosphoglycerate-independent phosp...    47   4e-07
tr|Q383C9|Q383C9_9TRYP 2,3-bisphosphoglycerate-independent phosp...    58   5e-07
tr|Q1AN53|Q1AN53_9ASPA Putative phosphopyruvate decarboxylase (F...    42   3e-06
tr|A2FDP9|A2FDP9_TRIVA Metalloenzyme superfamily protein OS=Tric...    52   2e-05
tr|Q23RM1|Q23RM1_TETTH 2,3-bisphosphoglycerate-independent phosp...    44   0.007
tr|Q4Q842|Q4Q842_LEIMA 2,3-bisphosphoglycerate-independent phosp...    32   0.012
tr|A4I3V2|A4I3V2_LEIIN 2,3-bisphosphoglycerate-independent phosp...    31   0.020
tr|A4HGS6|A4HGS6_LEIBR 2,3-bisphosphoglycerate-independent phosp...    32   0.042
tr|A6CFH2|A6CFH2_9PLAN Cofactor-independent phosphoglycerate mut...    37   1.1  

>tr|A7PHN3|A7PHN3_VITVI Chromosome chr17 scaffold_16, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00018006001
           PE=4 SV=1
          Length = 469

 Score =  100 bits (249), Expect = 6e-20
 Identities = 58/90 (64%), Positives = 63/90 (70%), Gaps = 4/90 (4%)
 Frame = -2

Query: 261 NFATIDDATGIVTSRRADRHFEEEGPILCSALDRIKLPSFPDYEI-CD*A*MWSCG---K 94
           NFAT+D+ TGIVTSRRADRHFEEEGPILC+ALD +KLPSFP YE+    A    CG   K
Sbjct: 105 NFATLDEKTGIVTSRRADRHFEEEGPILCAALDGMKLPSFPQYEVRVRYATEHRCGVVVK 164

Query: 93  RA*P*WNISGTDPLKDRRPLEVVEPLDDTD 4
                 NISGTDPLKD R L     LDDTD
Sbjct: 165 GPNLSGNISGTDPLKDNRLLLQATALDDTD 194


>tr|A5AYJ4|A5AYJ4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_002896 PE=4 SV=1
          Length = 492

 Score =  100 bits (249), Expect = 6e-20
 Identities = 58/90 (64%), Positives = 63/90 (70%), Gaps = 4/90 (4%)
 Frame = -2

Query: 261 NFATIDDATGIVTSRRADRHFEEEGPILCSALDRIKLPSFPDYEI-CD*A*MWSCG---K 94
           NFAT+D+ TGIVTSRRADRHFEEEGPILC+ALD +KLPSFP YE+    A    CG   K
Sbjct: 105 NFATLDEKTGIVTSRRADRHFEEEGPILCAALDGMKLPSFPQYEVRVRYATEHRCGVVVK 164

Query: 93  RA*P*WNISGTDPLKDRRPLEVVEPLDDTD 4
                 NISGTDPLKD R L     LDDTD
Sbjct: 165 GPNLSGNISGTDPLKDNRLLLQATALDDTD 194


>tr|Q2QPB6|Q2QPB6_ORYSJ cDNA clone:J033097K23, full insert sequence
           OS=Oryza sativa subsp. japonica GN=LOC_Os12g35040 PE=2
           SV=1
          Length = 442

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 55/90 (61%), Positives = 65/90 (72%), Gaps = 4/90 (4%)
 Frame = -2

Query: 261 NFATIDDATGIVTSRRADRHFEEEGPILCSALDRIKLPSFPDYEI-CD*A*MWSCG---K 94
           NFAT+D++TGI+ SRRADRHFEEEGPILC+ALD +KLPSFP+YE+    A    CG   K
Sbjct: 53  NFATLDESTGIIVSRRADRHFEEEGPILCAALDGLKLPSFPEYEVRVRYATEHRCGVVVK 112

Query: 93  RA*P*WNISGTDPLKDRRPLEVVEPLDDTD 4
                 NISGTDPLKD R     EPLDD++
Sbjct: 113 GPRLSGNISGTDPLKDNRLHLKAEPLDDSE 142


>tr|A2ZL97|A2ZL97_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_38597 PE=4 SV=1
          Length = 442

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 55/90 (61%), Positives = 65/90 (72%), Gaps = 4/90 (4%)
 Frame = -2

Query: 261 NFATIDDATGIVTSRRADRHFEEEGPILCSALDRIKLPSFPDYEI-CD*A*MWSCG---K 94
           NFAT+D++TGI+ SRRADRHFEEEGPILC+ALD +KLPSFP+YE+    A    CG   K
Sbjct: 53  NFATLDESTGIIVSRRADRHFEEEGPILCAALDGLKLPSFPEYEVRVRYATEHRCGVVVK 112

Query: 93  RA*P*WNISGTDPLKDRRPLEVVEPLDDTD 4
                 NISGTDPLKD R     EPLDD++
Sbjct: 113 GPRLSGNISGTDPLKDNRLHLKAEPLDDSE 142


>tr|Q8L816|Q8L816_ARATH Putative uncharacterized protein At4g09520
           OS=Arabidopsis thaliana GN=At4g09520 PE=2 SV=1
          Length = 492

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 53/90 (58%), Positives = 65/90 (72%), Gaps = 4/90 (4%)
 Frame = -2

Query: 261 NFATIDDATGIVTSRRADRHFEEEGPILCSALDRIKLPSFPDYEI-CD*A*MWSCG---K 94
           NFAT+D+ +G+V SRRADRHFEEEGPILC+ALD +KLPSFP+YE+    A    CG   K
Sbjct: 102 NFATLDEDSGVVVSRRADRHFEEEGPILCAALDGMKLPSFPEYEVRVRYATEHRCGVVVK 161

Query: 93  RA*P*WNISGTDPLKDRRPLEVVEPLDDTD 4
                 NISGTDPLKD R L   +PLD+++
Sbjct: 162 GPKLSGNISGTDPLKDNRLLLEAKPLDESE 191


>tr|A9S3E7|A9S3E7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_162619 PE=4 SV=1
          Length = 493

 Score = 94.7 bits (234), Expect = 3e-18
 Identities = 53/89 (59%), Positives = 64/89 (71%), Gaps = 4/89 (4%)
 Frame = -2

Query: 261 NFATIDDATGIVTSRRADRHFEEEGPILCSALDRIKLPSFPDYEI-CD*A*MWSCG---K 94
           NFATID+ TG+VTSRRADRHFEE GPILC+AL+ +KLPS+P+Y++    A    CG    
Sbjct: 104 NFATIDEETGVVTSRRADRHFEEAGPILCAALNGLKLPSYPEYKVSVRYATEHRCGVVVS 163

Query: 93  RA*P*WNISGTDPLKDRRPLEVVEPLDDT 7
                 NISG+DPLKD R L  V+PLDDT
Sbjct: 164 GPGLCGNISGSDPLKDHRLLLKVKPLDDT 192


>tr|A7PAJ1|A7PAJ1_VITVI Chromosome chr14 scaffold_9, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00038136001
           PE=4 SV=1
          Length = 208

 Score = 94.4 bits (233), Expect = 4e-18
 Identities = 55/89 (61%), Positives = 60/89 (67%), Gaps = 4/89 (4%)
 Frame = -2

Query: 261 NFATIDDATGIVTSRRADRHFEEEGPILCSALDRIKLPSFPDYEI-CD*A*MWSCG---K 94
           N AT+D+ TGIVTSRRADRH EEEGP LC+ALDR+KLPSFP YE+    A    CG   K
Sbjct: 17  NIATLDEKTGIVTSRRADRHSEEEGPTLCAALDRMKLPSFPQYEVRVRYATEHRCGVVVK 76

Query: 93  RA*P*WNISGTDPLKDRRPLEVVEPLDDT 7
                 NISGTDPLKD R L     LDDT
Sbjct: 77  GPNLSGNISGTDPLKDNRSLLQATALDDT 105


>tr|Q9LHK9|Q9LHK9_ARATH Phosphonopyruvate decarboxylase-like protein
           (Putative uncharacterized protein At3g30841)
           OS=Arabidopsis thaliana GN=At3g30841 PE=2 SV=1
          Length = 495

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 52/90 (57%), Positives = 64/90 (71%), Gaps = 4/90 (4%)
 Frame = -2

Query: 261 NFATIDDATGIVTSRRADRHFEEEGPILCSALDRIKLPSFPDYEI-CD*A*MWSCG---K 94
           NFAT+D+ +G+V SRRADRHFEEEGPILC+ALD +KL SFP+YE+    A    CG   K
Sbjct: 106 NFATLDEKSGVVVSRRADRHFEEEGPILCAALDGLKLQSFPEYEVRVRYATEHRCGVVVK 165

Query: 93  RA*P*WNISGTDPLKDRRPLEVVEPLDDTD 4
                 NISGTDPLKD R L   +PLD+++
Sbjct: 166 GPRLSGNISGTDPLKDNRLLLEAKPLDESE 195


>tr|Q9M0P1|Q9M0P1_ARATH Putative uncharacterized protein AT4g09520
           OS=Arabidopsis thaliana GN=AT4g09520 PE=4 SV=1
          Length = 507

 Score = 92.8 bits (229), Expect = 1e-17
 Identities = 53/97 (54%), Positives = 65/97 (67%), Gaps = 11/97 (11%)
 Frame = -2

Query: 261 NFATIDDATGIVTSRRADRHFEEEGPILCSALDRIKLPSFPDYE--------ICD*A*MW 106
           NFAT+D+ +G+V SRRADRHFEEEGPILC+ALD +KLPSFP+YE        +   A   
Sbjct: 110 NFATLDEDSGVVVSRRADRHFEEEGPILCAALDGMKLPSFPEYEVRVRLKFLVDRYATEH 169

Query: 105 SCG---KRA*P*WNISGTDPLKDRRPLEVVEPLDDTD 4
            CG   K      NISGTDPLKD R L   +PLD+++
Sbjct: 170 RCGVVVKGPKLSGNISGTDPLKDNRLLLEAKPLDESE 206


>tr|A8J5D8|A8J5D8_CHLRE Predicted protein (Fragment)
           OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_119977 PE=4
           SV=1
          Length = 488

 Score = 80.9 bits (198), Expect = 5e-14
 Identities = 46/90 (51%), Positives = 57/90 (63%), Gaps = 4/90 (4%)
 Frame = -2

Query: 264 CNFATIDDATGIVTSRRADRHFEEEGPILCSALDRIKLPSFPDYEI-CD*A*MWSCGKR- 91
           CNFAT+D A+GIVTSRRADRHFE  GP LC+ALD + +P +P Y +    A    CG   
Sbjct: 100 CNFATLDTASGIVTSRRADRHFEHLGPTLCAALDGLAVPGYPGYRVTVRYATEHRCGVAV 159

Query: 90  A*P*WN--ISGTDPLKDRRPLEVVEPLDDT 7
           + P  +  +  TDPLKD  PL   EP DD+
Sbjct: 160 SGPGLSDAVGDTDPLKDNLPLRKSEPTDDS 189