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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919328
Clone id YMU001_000123_G10
Library
Length 554
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000123_G10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGTTCTATGAATATAGCGAACGAGGTTTCATTAAAGCTTGTATACGCATGACAGCCAATC
CTGTTGTGAAGTGCTACCAATTGAGAGTTACATCCTTACAAAATACAGGAGTTATCTCTG
ATCAGGAAGTGTTTGAATCTGTGACAGAGAGGAGAAGTTTCTCTTGTTTAGACCCAGATG
ATTGCAAGGTAACCTCAGGAATCACCTTTGCTCCCAAGTCTTCAAAGCCTTGTGGATTGT
TTTGGAATTAAGAGCTGCATCGACAAGACACTCATGGACTTGTCTGAAAGAGTCGCAGAA
TTGTGCTGCATCCTTAGGACTTAACTTCTTTTGAACCGCTTCTCGAAGACGAGGCCAAAA
CACATCGCCATTGCCGAGATTCCCATCTAGTGTCAATGAGTCGTGTAGCTGATCGATTTT
GAGGTCATTAGCTGTGGAGACTGGCAGACCCTGAGCCTCCTCTTGCTTGCTAGAATTACC
GATATCATCTTCTTCACAGTAGGACGCAGAACGAACGCGAGGGAAGAGGTCGAGCACGCG
CAGAAACTGTTCTT
■■Homology search results ■■ -
sp_hit_id Q9ZD21
Definition sp|Q9ZD21|RF1_RICPR Peptide chain release factor 1 OS=Rickettsia prowazekii
Align length 72
Score (bit) 32.0
E-value 2.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919328|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_G10.
         (554 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9ZD21|RF1_RICPR Peptide chain release factor 1 OS=Rickettsia...    32   2.1  
sp|Q8K0D2|HABP2_MOUSE Hyaluronan-binding protein 2 OS=Mus muscul...    32   2.1  
sp|O32231|RNR_BACSU Ribonuclease R OS=Bacillus subtilis GN=rnr P...    32   2.7  
sp|Q68WK7|RF1_RICTY Peptide chain release factor 1 OS=Rickettsia...    31   4.6  
sp|O26928|TRUA_METTH tRNA pseudouridine synthase A OS=Methanobac...    30   6.0  
sp|A3KPF2|CARMB_ARATH Probable histone-arginine methyltransferas...    30   7.9  

>sp|Q9ZD21|RF1_RICPR Peptide chain release factor 1 OS=Rickettsia
           prowazekii GN=prfA PE=3 SV=1
          Length = 355

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = -3

Query: 510 SASYCEEDDIGNSSKQEEAQGLPVSTANDLKIDQLHDSLTL---DGNLGNGDVFWPRLRE 340
           S  Y E +D+    KQ       +  AN+ +++   D+ TL   D  +   +   P+L  
Sbjct: 34  SKEYAELEDVVVKIKQYNKAKSELEEANNFRLEMALDNATLEMIDNEIHTLENLLPKLER 93

Query: 339 AVQKKLSPKDAA 304
           AV+  L PKD A
Sbjct: 94  AVRISLLPKDEA 105


>sp|Q8K0D2|HABP2_MOUSE Hyaluronan-binding protein 2 OS=Mus musculus
           GN=Habp2 PE=1 SV=2
          Length = 558

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = +3

Query: 159 FSCLDPDDCKVTSGITFAPKSSK-----PCGLFWN*ELHRQDTHGL 281
           F  + PDDC V  G ++  K SK     PC L+WN  L  Q+T+ +
Sbjct: 184 FCEIGPDDCYVGDGYSYRGKVSKTVNQNPC-LYWNSHLLLQETYNM 228


>sp|O32231|RNR_BACSU Ribonuclease R OS=Bacillus subtilis GN=rnr PE=3
           SV=1
          Length = 779

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +3

Query: 123 QEVFESVTERRSFSCLDPDDCKVTSGITFAPKSSK 227
           Q V  + TE R+F  + PDD K+TS I F PK+ K
Sbjct: 138 QRVVGTYTETRNFGFVIPDDKKITSDI-FIPKNGK 171


>sp|Q68WK7|RF1_RICTY Peptide chain release factor 1 OS=Rickettsia
           typhi GN=prfA PE=3 SV=1
          Length = 355

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
 Frame = -3

Query: 510 SASYCEEDDIGNSSKQEEAQGLPVSTANDLKIDQLHDSLTLDGNLGNGDVF-----WPRL 346
           S  Y E +DI    K+       +  AN+L+++   D+ TL+  + N +++      P+L
Sbjct: 34  SKEYAELEDIVVKIKEYNKVKSELEEANNLRLEVALDNATLE--MINNEIYILENLLPKL 91

Query: 345 REAVQKKLSPKDAA 304
             AV+  L PKD A
Sbjct: 92  ERAVRISLLPKDEA 105


>sp|O26928|TRUA_METTH tRNA pseudouridine synthase A
           OS=Methanobacterium thermoautotrophicum GN=truA PE=3
           SV=1
          Length = 275

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
 Frame = -3

Query: 486 DIGNSSKQEEAQGLPVSTANDLKIDQLHDSLTLDGNLGNGDVFWPRLREAV-------QK 328
           D  N S++ +    PV   ND++I ++ DS+ +D  +      W  +R+ V       + 
Sbjct: 136 DFSNFSRRSDRD--PVRRINDVRISEVGDSIIID--VYGESFLWQMVRKMVRALLMVSEG 191

Query: 327 KLSPKDAAQFCDSFRQV 277
           +L+P D A   D+ R+V
Sbjct: 192 ELAPDDMAGLLDTDRRV 208


>sp|A3KPF2|CARMB_ARATH Probable histone-arginine methyltransferase
           CARM1B OS=Arabidopsis thaliana GN=CARM1B PE=2 SV=1
          Length = 528

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 21/74 (28%), Positives = 32/74 (43%)
 Frame = -3

Query: 471 SKQEEAQGLPVSTANDLKIDQLHDSLTLDGNLGNGDVFWPRLREAVQKKLSPKDAAQFCD 292
           SK  +     +S+    K+  L  +   DG++ +        R  V K    KD+ +FCD
Sbjct: 50  SKSSDGFSFDLSSTQLFKLGPLQFTCVSDGSISSAKEKSSFSRGVVIKFRDEKDSKEFCD 109

Query: 291 SFRQVHECLVDAAL 250
           SF    EC  D A+
Sbjct: 110 SF---EECKKDDAV 120
tr_hit_id Q0ZHF0
Definition tr|Q0ZHF0|Q0ZHF0_SOLCH Putative uncharacterized protein OS=Solanum chacoense
Align length 119
Score (bit) 68.6
E-value 2.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919328|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_G10.
         (554 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0ZHF0|Q0ZHF0_SOLCH Putative uncharacterized protein OS=Solan...    69   2e-10
tr|A9P238|A9P238_PICSI Putative uncharacterized protein OS=Picea...    63   9e-09
tr|B6U6D8|B6U6D8_MAIZE Putative uncharacterized protein OS=Zea m...    61   3e-08
tr|B6TR62|B6TR62_MAIZE Putative uncharacterized protein OS=Zea m...    59   1e-07
tr|B6SN90|B6SN90_MAIZE Putative uncharacterized protein OS=Zea m...    58   3e-07
tr|B6TLG0|B6TLG0_MAIZE Putative uncharacterized protein OS=Zea m...    54   7e-06
tr|B6SGK5|B6SGK5_MAIZE Putative uncharacterized protein OS=Zea m...    54   7e-06
tr|Q6NQD2|Q6NQD2_ARATH At5g12240 (MRNA, , clone: RAFL22-05-F16) ...    53   1e-05
tr|Q8GRJ4|Q8GRJ4_ORYSJ Putative uncharacterized protein P0524G08...    52   2e-05
tr|B8B538|B8B538_ORYSI Putative uncharacterized protein OS=Oryza...    52   2e-05
tr|A9TNP5|A9TNP5_PHYPA Predicted protein OS=Physcomitrella paten...    49   2e-04
tr|A7PFW0|A7PFW0_VITVI Chromosome chr6 scaffold_15, whole genome...    38   0.32 
tr|B4FGW9|B4FGW9_MAIZE Putative uncharacterized protein OS=Zea m...    36   1.2  
tr|Q0D477|Q0D477_ORYSJ Os07g0641800 protein OS=Oryza sativa subs...    36   1.6  
tr|Q9FMN9|Q9FMN9_ARATH Genomic DNA, chromosome 5, P1 clone:MXC9 ...    35   2.7  
tr|Q7XAE8|Q7XAE8_PETIN S2 self-incompatibility locus-linked poll...    34   4.6  

>tr|Q0ZHF0|Q0ZHF0_SOLCH Putative uncharacterized protein OS=Solanum
           chacoense PE=4 SV=1
          Length = 114

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 7/119 (5%)
 Frame = -3

Query: 552 EQFLRVLDLFPRVRSASYCEEDDIGNSSKQEEAQGLPVSTANDLKIDQLHDSLTLDGN-- 379
           ++F R+L+LFP VRS  Y  + D  + S  +  Q          ++ QL D  +  G   
Sbjct: 4   QEFQRLLELFPAVRSPDYYLDLDASSQSTSQSKQ--------KEEVKQLQDGQSKGGAVE 55

Query: 378 -----LGNGDVFWPRLREAVQKKLSPKDAAQFCDSFRQVHECLVDAALNSKTIHKALKT 217
                LG+G+ FW +L+ A +KK++P +A +FC +FRQV+  LVD  L+ +     L +
Sbjct: 56  SNTRALGHGEAFWGKLKAAAEKKMNPAEAEEFCKTFRQVYRKLVDEELSLEAARSLLSS 114


>tr|A9P238|A9P238_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 121

 Score = 63.2 bits (152), Expect = 9e-09
 Identities = 38/108 (35%), Positives = 55/108 (50%)
 Frame = -3

Query: 552 EQFLRVLDLFPRVRSASYCEEDDIGNSSKQEEAQGLPVSTANDLKIDQLHDSLTLDGNLG 373
           EQF R+L+LFP VRS  YC E++  N +     +   +   +D   D+L           
Sbjct: 4   EQFRRLLNLFPVVRSRHYCAENEASNRTSAPSERDKQLMEWHDAW-DELDAQENAAERSD 62

Query: 372 NGDVFWPRLREAVQKKLSPKDAAQFCDSFRQVHECLVDAALNSKTIHK 229
             D FW  LR +V +K+  ++A QFC  F++VHE LV  AL    I +
Sbjct: 63  REDPFWLHLRSSVAEKMGAENAEQFCKEFQKVHEQLVYKALPLDAIRR 110


>tr|B6U6D8|B6U6D8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 141

 Score = 61.2 bits (147), Expect = 3e-08
 Identities = 41/117 (35%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
 Frame = -3

Query: 552 EQFLRVLDLFPRVRSASYCEEDDIGNSSK-QEEAQGLPVSTANDLKIDQLHDSLTLDGNL 376
           E+F R+LDLFP VRS  YC  D +G SS+   +   +  +T  D K            + 
Sbjct: 4   EEFRRMLDLFPVVRSRDYCCSD-LGTSSRGTRQRSRVQEATKGDNK-----------DSS 51

Query: 375 GNGDVFWPRLREAVQKKLSPKDAAQFCDSFRQVHECLVDAALNSKTIHKALKTWEQR 205
           G  D+F  +L+ A + K+    A  FC +F +VHE LV   LN     K L  +E R
Sbjct: 52  GGRDMFMQKLKMAAENKIGATKAEFFCKTFEEVHEKLVHRELNLDAAKKFLSAYESR 108


>tr|B6TR62|B6TR62_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 107

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
 Frame = -3

Query: 552 EQFLRVLDLFPRVRSASYCEEDDIGNSSK-QEEAQGLPVSTANDLKIDQLHDSLTLDGNL 376
           E+F R+LDLFP VRS  YC  D +G SS+   +   +  +T  D K            + 
Sbjct: 4   EEFRRMLDLFPVVRSRDYCCSD-LGTSSRGTRQRSRVQEATKGDNK-----------DSS 51

Query: 375 GNGDVFWPRLREAVQKKLSPKDAAQFCDSFRQVHECLVDAALNSKTIHKALKTWE 211
           G  D+F  +L+ A + K+    A  FC +F +VHE LV   LN     K L  +E
Sbjct: 52  GGRDMFMQKLKMAAENKIGATKAEFFCKTFEEVHEKLVHRELNLDAAKKFLSAYE 106


>tr|B6SN90|B6SN90_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 107

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
 Frame = -3

Query: 552 EQFLRVLDLFPRVRSASYCEEDDIGNSSK-QEEAQGLPVSTANDLKIDQLHDSLTLDGNL 376
           ++F R+LDLFP VRS  YC  D +G SS+   +   +  +T  D K            + 
Sbjct: 4   DEFRRMLDLFPVVRSRDYCCSD-LGTSSRGTRQRSRVQEATKGDNK-----------DSS 51

Query: 375 GNGDVFWPRLREAVQKKLSPKDAAQFCDSFRQVHECLVDAALNSKTIHKALKTWE 211
           G  D+F  +L+ A + K+    A  FC +F +VHE LV   LN     K L  +E
Sbjct: 52  GGRDMFMQKLKMAAENKIGATKAEFFCKTFEEVHEKLVHRELNLDAAKKFLSAYE 106


>tr|B6TLG0|B6TLG0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 106

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 33/114 (28%), Positives = 50/114 (43%)
 Frame = -3

Query: 552 EQFLRVLDLFPRVRSASYCEEDDIGNSSKQEEAQGLPVSTANDLKIDQLHDSLTLDGNLG 373
           ++F R+LDLFP VRS  YC +        ++ ++    +  ND       D         
Sbjct: 4   KEFWRMLDLFPVVRSRGYCADPGTSIRGTRQRSRVQEAAKGNDKDSSDAQD--------- 54

Query: 372 NGDVFWPRLREAVQKKLSPKDAAQFCDSFRQVHECLVDAALNSKTIHKALKTWE 211
              +F  +L+ A +KK+    A  FC +F + HE LV   LN     K L  +E
Sbjct: 55  ---LFMQKLKMAAEKKIGTTKAEFFCKAFEETHEKLVYKELNLDAAKKFLSAYE 105


>tr|B6SGK5|B6SGK5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 106

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 33/114 (28%), Positives = 50/114 (43%)
 Frame = -3

Query: 552 EQFLRVLDLFPRVRSASYCEEDDIGNSSKQEEAQGLPVSTANDLKIDQLHDSLTLDGNLG 373
           ++F R+LDLFP VRS  YC +        ++ ++    +  ND       D         
Sbjct: 4   KEFWRMLDLFPVVRSRDYCADPGTSIRGTRQRSRVQEAAKGNDKDSSDAQD--------- 54

Query: 372 NGDVFWPRLREAVQKKLSPKDAAQFCDSFRQVHECLVDAALNSKTIHKALKTWE 211
              +F  +L+ A +KK+    A  FC +F + HE LV   LN     K L  +E
Sbjct: 55  ---LFMQKLKMAAEKKIGTTKAEFFCKAFEETHEKLVYKELNLDAAKKFLSAYE 105


>tr|Q6NQD2|Q6NQD2_ARATH At5g12240 (MRNA, , clone: RAFL22-05-F16)
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 114

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
 Frame = -3

Query: 552 EQFLRVLDLFPRVRSASYCEEDDIGNSSKQEEAQGLPVSTANDLKIDQLHDSLT------ 391
           ++F  +LDLFP VRS  +  E D   SSKQ  +Q +      D ++ + HD+ T      
Sbjct: 4   QEFRSLLDLFPVVRSRDHRAELD---SSKQSTSQSVV-----DREVSEWHDAPTVAEPKD 55

Query: 390 LDGNLGNGDVFWPRLREAVQKKLSPKDAAQFCDSFRQVHECLVDAALNSKTIHKAL 223
           L     + D FW  L+ A +KK+   +A +FC +F ++H+ LV   L+ +   + L
Sbjct: 56  LQYLKTDQDKFWENLKAAAEKKVGGVEAERFCKAFEKLHKKLVYEELDPEAAKRYL 111


>tr|Q8GRJ4|Q8GRJ4_ORYSJ Putative uncharacterized protein
           P0524G08.117 (Putative uncharacterized protein
           OJ1003_C06.101) OS=Oryza sativa subsp. japonica
           GN=P0524G08.117 PE=4 SV=1
          Length = 105

 Score = 52.0 bits (123), Expect = 2e-05
 Identities = 30/115 (26%), Positives = 51/115 (44%)
 Frame = -3

Query: 549 QFLRVLDLFPRVRSASYCEEDDIGNSSKQEEAQGLPVSTANDLKIDQLHDSLTLDGNLGN 370
           +F R+L+LFP VRS  YC E    +    ++++    +  N  +               +
Sbjct: 5   EFRRMLELFPVVRSRDYCAESGASSKGSTQQSRAQEATRGNKNE---------------S 49

Query: 369 GDVFWPRLREAVQKKLSPKDAAQFCDSFRQVHECLVDAALNSKTIHKALKTWEQR 205
            D F  +L+   +KK+    A  FC +F + H+ LV   LN     + L  +E+R
Sbjct: 50  SDQFMKKLKMVAEKKVGATKAELFCKTFEEAHKKLVYKELNLDAAQRFLNAYEKR 104


>tr|B8B538|B8B538_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_27058 PE=4 SV=1
          Length = 105

 Score = 52.0 bits (123), Expect = 2e-05
 Identities = 30/115 (26%), Positives = 51/115 (44%)
 Frame = -3

Query: 549 QFLRVLDLFPRVRSASYCEEDDIGNSSKQEEAQGLPVSTANDLKIDQLHDSLTLDGNLGN 370
           +F R+L+LFP VRS  YC E    +    ++++    +  N  +               +
Sbjct: 5   EFRRMLELFPVVRSRDYCAESGASSKGSTQQSRAQEATRGNKNE---------------S 49

Query: 369 GDVFWPRLREAVQKKLSPKDAAQFCDSFRQVHECLVDAALNSKTIHKALKTWEQR 205
            D F  +L+   +KK+    A  FC +F + H+ LV   LN     + L  +E+R
Sbjct: 50  SDQFMKKLKMVAEKKVGATKAELFCKTFEEAHKKLVYKELNLDAAQRFLNAYEKR 104