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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919338
Clone id YMU001_000123_H09
Library
Length 557
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000123_H09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGGAAGAATTCGCGGCCGCTTCGTCCACACCTGCTCGCACTGGTGCTTCCATCTGGGGCG
GAACGCTCCCCTACCGATGTTTTTTGACATCCCACAGCTTCGGCAGACCGCTTAGTCCCG
CTCATCTTCGGCGCAAGAGCGCTTGATCAGTGAGCTATTACGCACTCTTTCAAGGGTGGC
TGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCACTCCTACCTCCTTTACCACTGAGCGGT
CATTTAGGGGCCTTAGCTGGTGATCTGGGCTGTTCCCCTCTCGACGGTGAAGCTTATCCC
TCATCGTCTCACTGGTTGACCCTTTTCCTTCGTTCCTTTTACTTGAACGTTACATCTAGT
ATTCAGAGTTTGCCTCGATTTGGTACCGCTCTCGCAGCCCGCACCGGAACGGTGCTTTAC
CCCTAGATGGTCTAGTCAACTGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTC
TGGGTTCGAGTGGCATTTCACCCCTAAACACAACTCATCCGCTGATTTTCAACATCAGTC
GGTTCGGACCTCCACTT
■■Homology search results ■■ -
sp_hit_id Q80WV7
Definition sp|Q80WV7|SRR2L_MOUSE SRRM2-like protein OS=Mus musculus
Align length 87
Score (bit) 33.1
E-value 0.87
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919338|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_H09.
         (535 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q80WV7|SRR2L_MOUSE SRRM2-like protein OS=Mus musculus GN=MNCb...    33   0.87 
sp|Q2U968|SEC16_ASPOR COPII coat assembly protein sec16 OS=Asper...    31   4.3  
sp|Q566X8|DMX1B_DANRE Diencephalon/mesencephalon homeobox protei...    30   5.7  
sp|P28329|CLAT_HUMAN Choline O-acetyltransferase OS=Homo sapiens...    30   5.7  

>sp|Q80WV7|SRR2L_MOUSE SRRM2-like protein OS=Mus musculus
           GN=MNCb-4760 PE=2 SV=1
          Length = 648

 Score = 33.1 bits (74), Expect = 0.87
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = -1

Query: 265 PSRGEQPRSPAKAPK*PLSGKGGRSA-KTARRFA*KQPPLKECVIAH*SSALAPKMSGTK 89
           P+RG+  +SP  AP     G+GGR+A  TARR   ++   +       SSA AP+  G +
Sbjct: 354 PARGKDSQSPRSAPS--SQGRGGRAAGGTARRRRRRRRRRRSR-----SSANAPRRRGRR 406

Query: 88  RSAEAV--GCQKTSVGERSAPDGSTSA 14
           R+  A   G  ++  G  S+ D    A
Sbjct: 407 RTKPAPPRGSSRSLSGAHSSSDSGGGA 433


>sp|Q2U968|SEC16_ASPOR COPII coat assembly protein sec16
            OS=Aspergillus oryzae GN=sec16 PE=3 SV=1
          Length = 1843

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 39/121 (32%), Positives = 47/121 (38%), Gaps = 7/121 (5%)
 Frame = -1

Query: 361  PNRGKL*ILDVTFK*KERRKRVNQ*DDEG*ASPSRGEQPRSPAKAPK*PLSGKGGRSAKT 182
            P R KL   +  +  KE +K VN+ D    AS SRG  P   A AP    SG     A +
Sbjct: 1684 PIRAKLGEENSFYYDKELKKWVNKKDPNS-ASVSRGTPPPPKASAPSRSASGSTAPPAAS 1742

Query: 181  ARRFA*KQPPLKECVIAH*SS-------ALAPKMSGTKRSAEAVGCQKTSVGERSAPDGS 23
                   +PP         SS       A  P M GT RSA       TS    + P GS
Sbjct: 1743 MGLGLDSRPPSSAGAPPSLSSSPAPPSLAAPPPMLGTARSA------STSAAMPTPPIGS 1796

Query: 22   T 20
            +
Sbjct: 1797 S 1797


>sp|Q566X8|DMX1B_DANRE Diencephalon/mesencephalon homeobox protein
           1-B OS=Danio rerio GN=dmbx1b PE=2 SV=1
          Length = 369

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 22/80 (27%), Positives = 35/80 (43%)
 Frame = -1

Query: 316 KERRKRVNQ*DDEG*ASPSRGEQPRSPAKAPK*PLSGKGGRSAKTARRFA*KQPPLKECV 137
           KE+ +R+ +   EG     + E P   A+AP  PL G+G  SA +             C 
Sbjct: 130 KEQLQRLKEAGTEGAQDEGKEEAPPVEAQAPPSPLDGRGLTSAPS-------------CE 176

Query: 136 IAH*SSALAPKMSGTKRSAE 77
           +    +  +P+ SG +  AE
Sbjct: 177 LNEEVNVTSPEQSGAESGAE 196


>sp|P28329|CLAT_HUMAN Choline O-acetyltransferase OS=Homo sapiens
           GN=CHAT PE=1 SV=3
          Length = 748

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 19/63 (30%), Positives = 24/63 (38%)
 Frame = +2

Query: 14  RTGASIWGGTLPYRCFLTSHSFGRPLSPAHLRRKSA*SVSYYALFQGWLLLGKPPGCLCT 193
           R  AS+  G L Y+  L SHS     +   L  +      YY LF  + L G     L  
Sbjct: 233 RFAASLISGVLSYKALLDSHSIPTDCAKGQLSGQPLCMKQYYGLFSSYRLPGHTQDTLVA 292

Query: 194 PTS 202
             S
Sbjct: 293 QNS 295
tr_hit_id A6N1H4
Definition tr|A6N1H4|A6N1H4_ORYSI Retrotransposon protein OS=Oryza sativa subsp. indica
Align length 114
Score (bit) 138.0
E-value 2.0e-31
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919338|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_H09.
         (535 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6N1H4|A6N1H4_ORYSI Retrotransposon protein OS=Oryza sativa s...   138   2e-31
tr|B7FGU0|B7FGU0_MEDTR Putative uncharacterized protein OS=Medic...   129   1e-28
tr|Q5M9Z9|Q5M9Z9_TOBAC Putative uncharacterized protein orf106b ...    73   1e-23
tr|Q85WT3|Q85WT3_PINKO ORF46f OS=Pinus koraiensis PE=4 SV=1            87   4e-16
tr|A9PE47|A9PE47_POPTR Putative uncharacterized protein OS=Popul...    51   1e-13
tr|Q9RXQ4|Q9RXQ4_DEIRA Putative uncharacterized protein OS=Deino...    74   5e-12
tr|Q9RS75|Q9RS75_DEIRA Putative uncharacterized protein OS=Deino...    74   5e-12
tr|A7QY24|A7QY24_VITVI Chromosome undetermined scaffold_237, who...    50   3e-08
tr|B3D9S7|B3D9S7_BURM1 Putative uncharacterized protein OS=Burkh...    60   7e-08
tr|A7QCF1|A7QCF1_VITVI Chromosome undetermined scaffold_77, whol...    59   1e-07
tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote...    55   2e-06
tr|B1BE08|B1BE08_CLOBO Putative uncharacterized protein OS=Clost...    46   0.001
tr|A7PNG2|A7PNG2_VITVI Chromosome chr1 scaffold_22, whole genome...    44   0.005
tr|B4VCZ2|B4VCZ2_9ACTO Putative uncharacterized protein OS=Strep...    43   0.009
tr|B1BC32|B1BC32_CLOBO Putative uncharacterized protein OS=Clost...    42   0.020
tr|A1HM07|A1HM07_9FIRM Putative uncharacterized protein OS=Therm...    41   0.044
tr|Q0MX19|Q0MX19_ARAHY Leucine rich protein OS=Arachis hypogaea ...    40   0.076
tr|A5B6Y9|A5B6Y9_VITVI Photosystem I P700 chlorophyll A apoprote...    38   0.29 
tr|A2PD01|A2PD01_VIBCH Putative uncharacterized protein OS=Vibri...    35   0.58 
tr|A8LKH8|A8LKH8_DINSH H+transporting two-sector ATPase B/B' sub...    37   0.63 
tr|B2PX02|B2PX02_PROST Putative uncharacterized protein OS=Provi...    35   0.75 
tr|A1IW39|A1IW39_9LAMI Putative uncharacterized protein ophh-69 ...    37   0.85 
tr|B5GYY5|B5GYY5_STRCL Putative uncharacterized protein OS=Strep...    30   5.8  
tr|B4VCZ3|B4VCZ3_9ACTO Putative uncharacterized protein OS=Strep...    30   5.8  
tr|B5J1X7|B5J1X7_9RHOB ATP synthase B/B' CF(0) superfamily OS=Oc...    33   7.0  
tr|A3LW23|A3LW23_PICST Threonine deaminase OS=Pichia stipitis GN...    33   7.2  
tr|B5GFB2|B5GFB2_9ACTO Predicted protein OS=Streptomyces sp. SPB...    30   7.5  
tr|Q2CDQ4|Q2CDQ4_9RHOB FoF1 ATP synthase, subunit B OS=Oceanicol...    33   9.2  
tr|A3JNA5|A3JNA5_9RHOB FoF1 ATP synthase, subunit B OS=Rhodobact...    33   9.2  
tr|O02101|O02101_CAEEL Putative uncharacterized protein OS=Caeno...    33   9.3  

>tr|A6N1H4|A6N1H4_ORYSI Retrotransposon protein OS=Oryza sativa
           subsp. indica PE=4 SV=1
          Length = 109

 Score =  138 bits (347), Expect = 2e-31
 Identities = 76/114 (66%), Positives = 81/114 (71%), Gaps = 2/114 (1%)
 Frame = -2

Query: 474 MPLEPRASWFSPKCVEAQQLTRPSRGKAPFRCGLRE--RYQIEANSEY*M*RSSKRNEGK 301
           MPLEPRASWFSPKCVEAQQLT     K  F  G     + +   N+ Y       +  G 
Sbjct: 1   MPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGCASGTKSRQTLNTRY-----DPKITGV 55

Query: 300 GSTSETMRDKLHRREGNSPDHQLRPLNDRSVVKEVGVQRQPGGLPRSSHP*KSA 139
            S SETM DKLHRREGNSPDHQLRPLNDRSV+KEVGVQRQPGGLPRSSHP KSA
Sbjct: 56  RSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHPLKSA 109


>tr|B7FGU0|B7FGU0_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=4 SV=1
          Length = 102

 Score =  129 bits (323), Expect = 1e-28
 Identities = 70/108 (64%), Positives = 77/108 (71%)
 Frame = -2

Query: 474 MPLEPRASWFSPKCVEAQQLTRPSRGKAPFRCGLRERYQIEANSEY*M*RSSKRNEGKGS 295
           MPLEPRASWFSPKCVEAQQLT     K  F  G       E+ ++     +++      S
Sbjct: 1   MPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGR------ESGTKSRQTLNTRYPWRVKS 54

Query: 294 TSETMRDKLHRREGNSPDHQLRPLNDRSVVKEVGVQRQPGGLPRSSHP 151
            SE M DKLHRREGNSPDHQLRPLNDRSV+KEVGVQRQPGGLPRSSHP
Sbjct: 55  ASEAMGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHP 102


>tr|Q5M9Z9|Q5M9Z9_TOBAC Putative uncharacterized protein orf106b
           OS=Nicotiana tabacum GN=orf106b PE=4 SV=1
          Length = 106

 Score = 72.8 bits (177), Expect(2) = 1e-23
 Identities = 33/41 (80%), Positives = 34/41 (82%)
 Frame = +2

Query: 413 VNCCASTHFGENQLALGSSGISPLNTTHPLIFNISRFGPPL 535
           VNCCASTHFGENQLALG+SGISPL TTHPLI      GPPL
Sbjct: 48  VNCCASTHFGENQLALGASGISPLTTTHPLILQHQSVGPPL 88



 Score = 60.8 bits (146), Expect(2) = 1e-23
 Identities = 31/47 (65%), Positives = 35/47 (74%)
 Frame = +1

Query: 265 VKLIPHRLTG*PFSFVPFT*TLHLVFRVCLDLVPLSQPAPERCFTPR 405
           +KLIPHRLT  P    P     +LVFRVCLDLVPLS+PAP+ CFTPR
Sbjct: 1   MKLIPHRLTSRPCP--PLILRSYLVFRVCLDLVPLSRPAPKPCFTPR 45


>tr|Q85WT3|Q85WT3_PINKO ORF46f OS=Pinus koraiensis PE=4 SV=1
          Length = 46

 Score = 87.4 bits (215), Expect = 4e-16
 Identities = 42/46 (91%), Positives = 42/46 (91%)
 Frame = -2

Query: 474 MPLEPRASWFSPKCVEAQQLTRPSRGKAPFRCGLRERYQIEANSEY 337
           MPLEPRASWFSPKCVEAQQLT PSRGKA FR G RERYQIEANSEY
Sbjct: 1   MPLEPRASWFSPKCVEAQQLTGPSRGKALFRYGPRERYQIEANSEY 46


>tr|A9PE47|A9PE47_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 59

 Score = 51.2 bits (121), Expect(2) = 1e-13
 Identities = 24/34 (70%), Positives = 28/34 (82%)
 Frame = -3

Query: 407 HLGVKHRSGAGCESGTKSRQTLNTRCNVQVKGTK 306
           HLGVKH  GAG ESGTKSRQTLNTR ++++ G K
Sbjct: 23  HLGVKHCFGAGRESGTKSRQTLNTRYDLKITGVK 56



 Score = 48.9 bits (115), Expect(2) = 1e-13
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = -2

Query: 474 MPLEPRASWFSPKCVEAQQLT 412
           MPLEPRASWFSPKCVEAQQLT
Sbjct: 1   MPLEPRASWFSPKCVEAQQLT 21


>tr|Q9RXQ4|Q9RXQ4_DEIRA Putative uncharacterized protein
           OS=Deinococcus radiodurans GN=DR_0254 PE=4 SV=1
          Length = 139

 Score = 73.9 bits (180), Expect = 5e-12
 Identities = 35/49 (71%), Positives = 37/49 (75%)
 Frame = +2

Query: 89  LSPAHLRRKSA*SVSYYALFQGWLLLGKPPGCLCTPTSFTTERSFRGLS 235
           LSP H RR     VSYYALF+GWLLL +PPGCLC  TS TTERSFR LS
Sbjct: 91  LSPDHFRRIVTRPVSYYALFEGWLLLSQPPGCLCDDTSLTTERSFRDLS 139


>tr|Q9RS75|Q9RS75_DEIRA Putative uncharacterized protein
           OS=Deinococcus radiodurans GN=DR_2252 PE=4 SV=1
          Length = 133

 Score = 73.9 bits (180), Expect = 5e-12
 Identities = 35/49 (71%), Positives = 37/49 (75%)
 Frame = +2

Query: 89  LSPAHLRRKSA*SVSYYALFQGWLLLGKPPGCLCTPTSFTTERSFRGLS 235
           LSP H RR     VSYYALF+GWLLL +PPGCLC  TS TTERSFR LS
Sbjct: 85  LSPDHFRRIVTRPVSYYALFEGWLLLSQPPGCLCDDTSLTTERSFRDLS 133


>tr|A7QY24|A7QY24_VITVI Chromosome undetermined scaffold_237, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00009521001 PE=4 SV=1
          Length = 169

 Score = 50.4 bits (119), Expect(2) = 3e-08
 Identities = 24/31 (77%), Positives = 26/31 (83%)
 Frame = +2

Query: 413 VNCCASTHFGENQLALGSSGISPLNTTHPLI 505
           VN CAS +FGEN+LALGSS IS L TTHPLI
Sbjct: 138 VNWCASMYFGENRLALGSSDISTLTTTHPLI 168



 Score = 31.2 bits (69), Expect(2) = 3e-08
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +1

Query: 331 HLVFRVCLDLVPLSQPAPERCFTPR 405
           +LVFRVCLDL+ LS    ++ FTP+
Sbjct: 111 NLVFRVCLDLMLLSWATSKQYFTPK 135


>tr|B3D9S7|B3D9S7_BURM1 Putative uncharacterized protein
           OS=Burkholderia multivorans (strain ATCC 17616 / 249)
           GN=BMULJ_05092 PE=4 SV=1
          Length = 123

 Score = 60.1 bits (144), Expect = 7e-08
 Identities = 31/59 (52%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
 Frame = +2

Query: 38  GTLPYR-CFLTSHSFGRPLSPAHLRRKSA*SVSYYALFQGWLLLGKPPGCLCTPTSFTT 211
           GTL Y  C   S +    L+P HL R++  SVSYYA F+GWLLL +PP C   PTSF T
Sbjct: 65  GTLSYHACKHASAASVYGLAPLHLPRRTTRSVSYYAFFKGWLLLSQPPDCFSLPTSFPT 123


>tr|A7QCF1|A7QCF1_VITVI Chromosome undetermined scaffold_77, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00035369001 PE=4 SV=1
          Length = 235

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 28/31 (90%), Positives = 28/31 (90%)
 Frame = +2

Query: 413 VNCCASTHFGENQLALGSSGISPLNTTHPLI 505
           VN CASTHFGENQLALGSS ISPL TTHPLI
Sbjct: 57  VNRCASTHFGENQLALGSSDISPLTTTHPLI 87



 Score = 47.0 bits (110), Expect = 6e-04
 Identities = 28/66 (42%), Positives = 34/66 (51%)
 Frame = +1

Query: 337 VFRVCLDLVPLSQPAPERCFTPRWSSQLLRLNAFRGEPASSGFEWHFTPKHNSSADFQHQ 516
           +FRVCLDLVPLS+PA ++CFTPR          F     + G               QHQ
Sbjct: 32  MFRVCLDLVPLSRPALKQCFTPRCPVNRCASTHFGENQLALGSSDISPLTTTHPLILQHQ 91

Query: 517 SVRTST 534
           SV+TST
Sbjct: 92  SVQTST 97