BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919339|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_H10.
         (423 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q06103|RPN7_YEAST 26S proteasome regulatory subunit RPN7 OS=S...    31   2.3  
sp|O43085|YHSA_SCHPO Uncharacterized RING finger protein C947.10...    30   4.0  
sp|Q7TQ69|TMC3_MOUSE Transmembrane channel-like protein 3 OS=Mus...    30   5.0  
sp|A0JM13|C2CD3_XENTR C2 domain-containing protein 3 OS=Xenopus ...    30   5.0  
sp|Q92823|NRCAM_HUMAN Neuronal cell adhesion molecule OS=Homo sa...    30   5.2  
sp|Q03088|SVL3_YEAST Styryl dye vacuolar localization protein 3 ...    29   6.6  
sp|Q5TGY3|AHDC1_HUMAN A.T hook DNA-binding motif-containing prot...    29   6.6  
sp|Q469A3|CAPPA_METBF Phosphoenolpyruvate carboxylase OS=Methano...    29   8.6  
sp|O74733|CFT1_SCHPO Protein cft1 OS=Schizosaccharomyces pombe G...    24   9.2  

>sp|Q06103|RPN7_YEAST 26S proteasome regulatory subunit RPN7
           OS=Saccharomyces cerevisiae GN=RPN7 PE=1 SV=3
          Length = 429

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -1

Query: 213 IASLKSFSISILARDYVTTMPHFITFYEDIIISC 112
           + S+ S +IS+ A DY +  P+ +  Y +++I C
Sbjct: 286 LQSISSLTISLYASDYASYFPYLLETYANVLIPC 319


>sp|O43085|YHSA_SCHPO Uncharacterized RING finger protein C947.10
           OS=Schizosaccharomyces pombe GN=SPBC947.10 PE=2 SV=1
          Length = 676

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = -1

Query: 144 ITFYEDIIISCTCSGHGPFWPIRHQYIFLNLSVYS 40
           + FY  I++ C  S +  FWP+ +++ F++  +++
Sbjct: 466 LRFYFIILVVCIASLYSAFWPVIYRFYFISALIFT 500


>sp|Q7TQ69|TMC3_MOUSE Transmembrane channel-like protein 3 OS=Mus
           musculus GN=Tmc3 PE=2 SV=1
          Length = 1130

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 359 ITRFEPSSPGMGEIMQDDLVVSPSQGNPDGDTNLHKER 246
           ITR  P SPG G       ++  S+  P+ DTN H  R
Sbjct: 817 ITRSLPQSPGQGSRDPCSPLLDGSRSRPEQDTNRHPHR 854


>sp|A0JM13|C2CD3_XENTR C2 domain-containing protein 3 OS=Xenopus
           tropicalis GN=c2cd3 PE=2 SV=1
          Length = 2311

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 22/72 (30%), Positives = 34/72 (47%)
 Frame = -2

Query: 326 GEIMQDDLVVSPSQGNPDGDTNLHKERSNEFTNYSLSL*RHSRAFPFPF*QGITLRPCLI 147
           G  ++D +VVS  + +PD D N   +      NYSLS  R +   P P      +R  L 
Sbjct: 305 GSKLRDAMVVSALKSSPDLDHNPDIKLPLALNNYSLSQARATSEIPSP----TLMRNLLN 360

Query: 146 SLHFMRTSSLVV 111
           S H  +T  +++
Sbjct: 361 SRHSPQTRDILL 372


>sp|Q92823|NRCAM_HUMAN Neuronal cell adhesion molecule OS=Homo
           sapiens GN=NRCAM PE=1 SV=3
          Length = 1304

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = +1

Query: 211 YSDRL*LVNSLERSLCRLVSPSGFP*EGETTKSSCIISPMPGDEGSNLVITWK 369
           YS R+  VNS+ +SL    S        E  K+   +  + G E  NLVITWK
Sbjct: 717 YSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTAVEGL-GSEPDNLVITWK 768


>sp|Q03088|SVL3_YEAST Styryl dye vacuolar localization protein 3
           OS=Saccharomyces cerevisiae GN=SVL3 PE=1 SV=1
          Length = 825

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -2

Query: 365 HVITRFEPSSPGMGEIMQDDLVVSPSQGNPDGDTNLHKERSNEFTN 228
           HV T+ + SS  M E+  ++  V+ S  NPD  TN     + +FTN
Sbjct: 706 HVPTQRQFSSSTMIEVTNNNNKVNNSSSNPDISTNSVVHNAMQFTN 751


>sp|Q5TGY3|AHDC1_HUMAN A.T hook DNA-binding motif-containing protein
           1 OS=Homo sapiens GN=AHDC1 PE=1 SV=1
          Length = 1603

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -2

Query: 290 SQGNPDGDTNLHKERSNEFTNYSLSL 213
           S G P G T L +ER N FT Y  SL
Sbjct: 818 STGAPSGQTELSQERQNLFTGYFRSL 843


>sp|Q469A3|CAPPA_METBF Phosphoenolpyruvate carboxylase
           OS=Methanosarcina barkeri (strain Fusaro / DSM 804)
           GN=ppcA PE=3 SV=1
          Length = 526

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = -2

Query: 398 TKPLSVLVYAFHVITRFEPSSPGMGEIMQDDLVVSPSQGN 279
           +K L +L  AF + T  EPS   + E+MQ DL+ + S+GN
Sbjct: 462 SKDLDILHGAFALETSPEPSYRILVEMMQPDLLQAGSRGN 501


>sp|O74733|CFT1_SCHPO Protein cft1 OS=Schizosaccharomyces pombe
           GN=cft1 PE=2 SV=1
          Length = 1441

 Score = 24.3 bits (51), Expect(2) = 9.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 210 ASLKSFSISILARDYVTTMPHFITFYEDIIISCTCSGHGP 91
           A + +    + ++ +VT   H+   YED+  S  CS H P
Sbjct: 128 AKVSTLEWDMQSQSFVTNSLHY---YEDVKSSNICSSHTP 164



 Score = 23.9 bits (50), Expect(2) = 9.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 269 DTNLHKERSNEFTNYSLSL*RHSRAF 192
           +TN+H  R+NE T Y L L    + F
Sbjct: 76  ETNMHLIRTNEQTTYVLRLVSQVKVF 101

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919339|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_H10.
         (423 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5PCT3|A5PCT3_9SPHN tRNA and rRNA cytosine-C5-methylase OS=Er...    33   5.4  

>tr|A5PCT3|A5PCT3_9SPHN tRNA and rRNA cytosine-C5-methylase
           OS=Erythrobacter sp. SD-21 GN=ED21_22893 PE=4 SV=1
          Length = 414

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
 Frame = -2

Query: 401 WTKPLSVLVYAFHVITRFE------PSSPGMGEIMQDDLVVSPSQGNPDGDTNLHKE 249
           W KP  VLVYA   + R E      PSS G+  I QDDL   P   NP  D  L  +
Sbjct: 339 WLKPGGVLVYATCSLEREEGEGQELPSSLGIAPIAQDDL---PDGINPSDDGTLRTD 392