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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919342
Clone id YMU001_000124_A02
Library
Length 242
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000124_A02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGGGAGTCTGTGTTTCTCATGTGTTGATGTTGATGCTGTTGTCATAGTGAGCCTTCCACA
GAGACGTGCAATACTAGGCCCCGTCAGACTGGCAGAGGAGATTGGGTCACTGTCATTAGT
TTTATGCTTGCGGTGCTGGTTTTGGTAGTGGCAACCACCACAACTGGAACTGACTCTGAT
TGTTTTAGTTTCAAAGGTGACAAGCCCAAAGCGGAGGATGATGTGCCCTACGGATATGGG
TT
■■Homology search results ■■ -
sp_hit_id Q24629
Definition sp|Q24629|REF2P_DROSI Protein ref(2)P OS=Drosophila simulans
Align length 58
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919342|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_A02.
         (242 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q24629|REF2P_DROSI Protein ref(2)P OS=Drosophila simulans GN=...    31   1.7  
sp|P51796|CLCN5_RAT Chloride channel protein 5 OS=Rattus norvegi...    30   4.9  
sp|Q9TTU3|CLCN5_RABIT Chloride channel protein 5 OS=Oryctolagus ...    30   4.9  
sp|Q5RBK4|CLCN5_PONAB Chloride channel protein 5 OS=Pongo abelii...    30   4.9  
sp|Q9GKE7|CLCN5_PIG Chloride channel protein 5 OS=Sus scrofa GN=...    30   4.9  
sp|Q9WVD4|CLCN5_MOUSE Chloride channel protein 5 OS=Mus musculus...    30   4.9  
sp|P51795|CLCN5_HUMAN Chloride channel protein 5 OS=Homo sapiens...    30   4.9  

>sp|Q24629|REF2P_DROSI Protein ref(2)P OS=Drosophila simulans
           GN=ref(2)P PE=4 SV=1
          Length = 599

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
 Frame = -3

Query: 204 LVTFETKTIRVSSS--CGGCHYQNQHRKH-----KTNDSDPISSASLTGPSIARLCGR 52
           L+ F  K ++ S+   C  C   ++H +H      TN+   +  A  TGP + R CGR
Sbjct: 135 LIGFRYKCVQCSNFDLCQKCESAHKHPEHLMLRMPTNNGPGMVDAWFTGPGLGRRCGR 192


>sp|P51796|CLCN5_RAT Chloride channel protein 5 OS=Rattus norvegicus
           GN=Clcn5 PE=2 SV=1
          Length = 746

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -3

Query: 192 ETKTIRVSSSCGG--CHYQNQHRKHKTNDSDPISSASLTGPSIA 67
           E   + V+  CG   CH  N++RK++    + +S+A+  G S+A
Sbjct: 211 EGPLVHVACCCGNILCHCFNKYRKNEAKRREVLSAAAAAGVSVA 254


>sp|Q9TTU3|CLCN5_RABIT Chloride channel protein 5 OS=Oryctolagus
           cuniculus GN=CLCN5 PE=2 SV=1
          Length = 746

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -3

Query: 192 ETKTIRVSSSCGG--CHYQNQHRKHKTNDSDPISSASLTGPSIA 67
           E   + V+  CG   CH  N++RK++    + +S+A+  G S+A
Sbjct: 211 EGPLVHVACCCGNILCHRFNKYRKNEAKRREVLSAAAAAGVSVA 254


>sp|Q5RBK4|CLCN5_PONAB Chloride channel protein 5 OS=Pongo abelii
           GN=CLCN5 PE=2 SV=1
          Length = 746

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -3

Query: 192 ETKTIRVSSSCGG--CHYQNQHRKHKTNDSDPISSASLTGPSIA 67
           E   + V+  CG   CH  N++RK++    + +S+A+  G S+A
Sbjct: 211 EGPLVHVACCCGNILCHCFNKYRKNEAKRREVLSAAAAAGVSVA 254


>sp|Q9GKE7|CLCN5_PIG Chloride channel protein 5 OS=Sus scrofa
           GN=CLCN5 PE=2 SV=1
          Length = 746

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -3

Query: 192 ETKTIRVSSSCGG--CHYQNQHRKHKTNDSDPISSASLTGPSIA 67
           E   + V+  CG   CH  N++RK++    + +S+A+  G S+A
Sbjct: 211 EGPLVHVACCCGNILCHCFNKYRKNEAKRREVLSAAAAAGVSVA 254


>sp|Q9WVD4|CLCN5_MOUSE Chloride channel protein 5 OS=Mus musculus
           GN=Clcn5 PE=2 SV=1
          Length = 746

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -3

Query: 192 ETKTIRVSSSCGG--CHYQNQHRKHKTNDSDPISSASLTGPSIA 67
           E   + V+  CG   CH  N++RK++    + +S+A+  G S+A
Sbjct: 211 EGPLVHVACCCGNILCHCFNKYRKNEAKRREVLSAAAAAGVSVA 254


>sp|P51795|CLCN5_HUMAN Chloride channel protein 5 OS=Homo sapiens
           GN=CLCN5 PE=1 SV=1
          Length = 746

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -3

Query: 192 ETKTIRVSSSCGG--CHYQNQHRKHKTNDSDPISSASLTGPSIA 67
           E   + V+  CG   CH  N++RK++    + +S+A+  G S+A
Sbjct: 211 EGPLVHVACCCGNILCHCFNKYRKNEAKRREVLSAAAAAGVSVA 254
tr_hit_id A9NQS2
Definition tr|A9NQS2|A9NQS2_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 65
Score (bit) 66.6
E-value 6.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919342|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_A02.
         (242 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NQS2|A9NQS2_PICSI Putative uncharacterized protein OS=Picea...    67   6e-10
tr|A9SW20|A9SW20_PHYPA Predicted protein OS=Physcomitrella paten...    65   2e-09
tr|A5BSH2|A5BSH2_VITVI Putative uncharacterized protein (Fragmen...    65   2e-09
tr|A7PES8|A7PES8_VITVI Chromosome chr11 scaffold_13, whole genom...    64   3e-09
tr|Q93YS8|Q93YS8_ARATH Putative uncharacterized protein At4g1334...    63   6e-09
tr|Q8VZI4|Q8VZI4_ARATH AT3g24470/MXP5_4 OS=Arabidopsis thaliana ...    63   6e-09
tr|A7NXR3|A7NXR3_VITVI Chromosome chr5 scaffold_2, whole genome ...    62   1e-08
tr|Q3EA43|Q3EA43_ARATH Uncharacterized protein At4g13345.2 OS=Ar...    60   4e-08
tr|Q7XUM6|Q7XUM6_ORYSA OSJNBb0002J11.6 protein OS=Oryza sativa G...    58   3e-07
tr|Q0JBW5|Q0JBW5_ORYSJ Os04g0506300 protein OS=Oryza sativa subs...    58   3e-07
tr|Q01J07|Q01J07_ORYSA OSIGBa0145C12.5 protein OS=Oryza sativa G...    58   3e-07
tr|B8ARD4|B8ARD4_ORYSI Putative uncharacterized protein OS=Oryza...    58   3e-07
tr|A3AVE2|A3AVE2_ORYSJ Putative uncharacterized protein OS=Oryza...    58   3e-07
tr|Q5VR48|Q5VR48_ORYSJ cDNA clone:J023033E12, full insert sequen...    52   1e-05
tr|B8ADK3|B8ADK3_ORYSI Putative uncharacterized protein OS=Oryza...    52   1e-05
tr|A2ZPY3|A2ZPY3_ORYSJ Putative uncharacterized protein OS=Oryza...    52   1e-05
tr|B6SVV5|B6SVV5_MAIZE TMS membrane protein/tumor differentially...    52   2e-05
tr|B4FKA6|B4FKA6_MAIZE Putative uncharacterized protein OS=Zea m...    52   2e-05
tr|Q3EBP6|Q3EBP6_ARATH Uncharacterized protein At2g33205.1 OS=Ar...    50   4e-05
tr|B7ZZZ5|B7ZZZ5_MAIZE Putative uncharacterized protein OS=Zea m...    50   4e-05
tr|B6U9P4|B6U9P4_MAIZE TMS membrane protein/tumor differentially...    49   9e-05
tr|B4FZL8|B4FZL8_MAIZE Putative uncharacterized protein OS=Zea m...    49   9e-05
tr|B4FY55|B4FY55_MAIZE Putative uncharacterized protein OS=Zea m...    49   9e-05
tr|A5AGT3|A5AGT3_VITVI Putative uncharacterized protein OS=Vitis...    48   3e-04
tr|Q9LHF3|Q9LHF3_ARATH Arabidopsis thaliana genomic DNA, chromos...    39   0.13 
tr|B2VU89|B2VU89_PYRTR Putative uncharacterized protein OS=Pyren...    37   0.63 
tr|B4FBW6|B4FBW6_MAIZE Putative uncharacterized protein OS=Zea m...    36   1.1  
tr|B4ITJ2|B4ITJ2_DROYA GE22946 OS=Drosophila yakuba GN=GE22946 P...    36   1.1  
tr|Q2H1J4|Q2H1J4_CHAGB Predicted protein OS=Chaetomium globosum ...    34   3.1  
tr|Q6V6C2|Q6V6C2_DROSI Ref(2)P (Fragment) OS=Drosophila simulans...    33   7.0  

>tr|A9NQS2|A9NQS2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 343

 Score = 66.6 bits (161), Expect = 6e-10
 Identities = 28/65 (43%), Positives = 40/65 (61%)
 Frame = +1

Query: 46  SEPSTETCNTRPRQTGRGDWVTVISFMXXXXXXXXXXXXXGTDSDCFSFKGDKPKAEDDV 225
           SEP+ + CN R + TG+GDW+T++SF+             G DS  F F+  + ++EDDV
Sbjct: 251 SEPTMDNCNVRKQPTGKGDWITIVSFIIALFAIVTAAFSAGIDSRVFQFRKGEFQSEDDV 310

Query: 226 PYGYG 240
           PYGYG
Sbjct: 311 PYGYG 315


>tr|A9SW20|A9SW20_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_216309 PE=4 SV=1
          Length = 387

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
 Frame = +1

Query: 7   SVFLMXXXXXXXHSEPSTETCNTRPRQTGRGDWVTVISFMXXXXXXXXXXXXXGTDSDCF 186
           S++L+        SEP + +CNTR RQTG+ DW+T+ISF+             G DS+ F
Sbjct: 240 SLYLIFLCWSAIMSEPLSASCNTRERQTGKADWLTIISFLIAFLAIVFATYTTGIDSEAF 299

Query: 187 SF-KGDKPKAEDDVPYGYG 240
           SF K D+ K +  +PY YG
Sbjct: 300 SFKKKDESKDDGSLPYSYG 318


>tr|A5BSH2|A5BSH2_VITVI Putative uncharacterized protein (Fragment)
           OS=Vitis vinifera GN=VITISV_041932 PE=4 SV=1
          Length = 397

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 29/65 (44%), Positives = 37/65 (56%)
 Frame = +1

Query: 46  SEPSTETCNTRPRQTGRGDWVTVISFMXXXXXXXXXXXXXGTDSDCFSFKGDKPKAEDDV 225
           SEP  + CN +     + DW+T+ISF+             G DS CF F+ D  +AEDDV
Sbjct: 262 SEPPEDRCNQKAESATKADWLTIISFIVALXAMVIATFSTGIDSKCFQFRKDDTQAEDDV 321

Query: 226 PYGYG 240
           PYGYG
Sbjct: 322 PYGYG 326


>tr|A7PES8|A7PES8_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016773001
           PE=4 SV=1
          Length = 397

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 28/65 (43%), Positives = 36/65 (55%)
 Frame = +1

Query: 46  SEPSTETCNTRPRQTGRGDWVTVISFMXXXXXXXXXXXXXGTDSDCFSFKGDKPKAEDDV 225
           SEP  + CN +     + DW+T+ISF+             G DS CF F+ D  +AEDDV
Sbjct: 262 SEPPEDRCNQKVESATKADWLTIISFIVALLAMVIATFSTGIDSKCFQFRKDDTQAEDDV 321

Query: 226 PYGYG 240
           PYGYG
Sbjct: 322 PYGYG 326


>tr|Q93YS8|Q93YS8_ARATH Putative uncharacterized protein At4g13345
           OS=Arabidopsis thaliana GN=At4g13345 PE=2 SV=1
          Length = 394

 Score = 63.2 bits (152), Expect = 6e-09
 Identities = 28/65 (43%), Positives = 36/65 (55%)
 Frame = +1

Query: 46  SEPSTETCNTRPRQTGRGDWVTVISFMXXXXXXXXXXXXXGTDSDCFSFKGDKPKAEDDV 225
           SEP  ETCN +   + R DW+T+ISF+             G DS CF F+ D+   ED +
Sbjct: 262 SEPVGETCNRKAEGSSRTDWLTIISFVVALLAMVIATFSTGVDSQCFQFRKDENHEEDAI 321

Query: 226 PYGYG 240
           PYGYG
Sbjct: 322 PYGYG 326


>tr|Q8VZI4|Q8VZI4_ARATH AT3g24470/MXP5_4 OS=Arabidopsis thaliana
           GN=At3g24460 PE=2 SV=1
          Length = 409

 Score = 63.2 bits (152), Expect = 6e-09
 Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
 Frame = +1

Query: 46  SEPSTETCNTRPRQTGRGDWVTVISFMXXXXXXXXXXXXXGTDSDCFSFKGD----KPKA 213
           SEP  E+CN +   + R DW+T+ISF+             G DS CF FK D    + +A
Sbjct: 269 SEPVGESCNRKAAASNRTDWLTIISFVVALLAMVIATFSTGIDSQCFQFKKDENDQEEEA 328

Query: 214 EDDVPYGYG 240
           EDDVPYGYG
Sbjct: 329 EDDVPYGYG 337


>tr|A7NXR3|A7NXR3_VITVI Chromosome chr5 scaffold_2, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020439001
           PE=4 SV=1
          Length = 423

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 26/65 (40%), Positives = 37/65 (56%)
 Frame = +1

Query: 46  SEPSTETCNTRPRQTGRGDWVTVISFMXXXXXXXXXXXXXGTDSDCFSFKGDKPKAEDDV 225
           SEP+TE CN + ++    DW+TV+SF+             G DS  F F+ D+ + EDD+
Sbjct: 277 SEPATENCNAQKQEKSNADWITVLSFLIAICAIVMATFSTGIDSQSFQFRKDEVQEEDDI 336

Query: 226 PYGYG 240
           PY YG
Sbjct: 337 PYKYG 341


>tr|Q3EA43|Q3EA43_ARATH Uncharacterized protein At4g13345.2
           OS=Arabidopsis thaliana GN=At4g13345 PE=4 SV=1
          Length = 394

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 26/64 (40%), Positives = 35/64 (54%)
 Frame = +1

Query: 49  EPSTETCNTRPRQTGRGDWVTVISFMXXXXXXXXXXXXXGTDSDCFSFKGDKPKAEDDVP 228
           +P  ETCN +   + R DW+T+ISF+             G DS CF F+ D+   ED +P
Sbjct: 263 QPVGETCNRKAEGSSRTDWLTIISFVVALLAMVIATFSTGVDSQCFQFRKDENHEEDAIP 322

Query: 229 YGYG 240
           YGYG
Sbjct: 323 YGYG 326


>tr|Q7XUM6|Q7XUM6_ORYSA OSJNBb0002J11.6 protein OS=Oryza sativa
           GN=OSJNBb0002J11.6 PE=4 SV=1
          Length = 477

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 26/65 (40%), Positives = 34/65 (52%)
 Frame = +1

Query: 43  HSEPSTETCNTRPRQTGRGDWVTVISFMXXXXXXXXXXXXXGTDSDCFSFKGDKPKAEDD 222
           HSEP T  C+TR      GDW T++SF+             G D+  F F+ D+ + EDD
Sbjct: 220 HSEPQTGKCHTRLIFANDGDWATIVSFIIAICAIVMATFSTGIDTRSFQFRNDEDQLEDD 279

Query: 223 VPYGY 237
           VPY Y
Sbjct: 280 VPYSY 284


>tr|Q0JBW5|Q0JBW5_ORYSJ Os04g0506300 protein OS=Oryza sativa subsp.
           japonica GN=Os04g0506300 PE=2 SV=1
          Length = 404

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 26/65 (40%), Positives = 34/65 (52%)
 Frame = +1

Query: 43  HSEPSTETCNTRPRQTGRGDWVTVISFMXXXXXXXXXXXXXGTDSDCFSFKGDKPKAEDD 222
           HSEP T  C+TR      GDW T++SF+             G D+  F F+ D+ + EDD
Sbjct: 256 HSEPQTGKCHTRLIFANDGDWATIVSFIIAICAIVMATFSTGIDTRSFQFRNDEDQLEDD 315

Query: 223 VPYGY 237
           VPY Y
Sbjct: 316 VPYSY 320