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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919344
Clone id YMU001_000124_A04
Library
Length 320
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000124_A04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTCAAATGGTTGAGTCACTTTAATAGGATATAAAGGCATCTTATCCTTTCGTTGTGTGT
GAACTTATAACATTGGCCTTCATCACATCCTTTTGCAAAAAGTGATGCATCCTTGAATAA
GGTAGGCCACCAATAGCCTGATTCCAACACCATTCTAGCAGTTAGTTCCACTGAGAAATG
TCCTCCGGCTATACCCATGTGGGCTTCTTGCAGTATGTGTAAATACTCATCCTCACGAGC
ACAACATCTAAGAATATCATCCTTCCCTAACTTGTAGAGAGTTCCCACAATGAGAGAATA
AGGTGCGCATTCTTTTAACA
■■Homology search results ■■ -
sp_hit_id P92516
Definition sp|P92516|M750_ARATH Uncharacterized mitochondrial protein AtMg00750 OS=Arabidopsis thaliana
Align length 28
Score (bit) 38.1
E-value 0.014
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919344|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_A04.
         (320 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P92516|M750_ARATH Uncharacterized mitochondrial protein AtMg0...    38   0.014
sp|Q9NXP7|GIN1_HUMAN Gypsy retrotransposon integrase-like protei...    37   0.023
sp|Q5RBK0|GIN1_PONAB Gypsy retrotransposon integrase-like protei...    36   0.067
sp|Q8K259|GIN1_MOUSE Gypsy retrotransposon integrase-like protei...    36   0.067
sp|Q4R6I1|GIN1_MACFA Gypsy retrotransposon integrase-like protei...    36   0.067
sp|O93209|POL_FFV Pro-Pol polyprotein OS=Feline foamy virus GN=p...    31   1.7  
sp|P12255|FHAB_BORPE Filamentous hemagglutinin OS=Bordetella per...    31   1.7  
sp|Q66H30|GIN1_RAT Gypsy retrotransposon integrase-like protein ...    31   2.2  
sp|O95625|ZBT11_HUMAN Zinc finger and BTB domain-containing prot...    30   2.8  
sp|Q9CX56|PSMD8_MOUSE 26S proteasome non-ATPase regulatory subun...    30   3.7  
sp|Q5RE15|PSMD8_PONAB 26S proteasome non-ATPase regulatory subun...    30   4.8  
sp|P48556|PSMD8_HUMAN 26S proteasome non-ATPase regulatory subun...    30   4.8  
sp|A4FUB7|GIN1_BOVIN Gypsy retrotransposon integrase-like protei...    30   4.8  

>sp|P92516|M750_ARATH Uncharacterized mitochondrial protein
           AtMg00750 OS=Arabidopsis thaliana GN=AtMg00750 PE=4 SV=1
          Length = 119

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -3

Query: 156 RMVLESGYWWPTLFKDASLFAKGCDEGQ 73
           R VL++G++WPT FKDA  F   CD  Q
Sbjct: 33  RFVLQAGFYWPTTFKDAHGFVSSCDACQ 60


>sp|Q9NXP7|GIN1_HUMAN Gypsy retrotransposon integrase-like protein 1
           OS=Homo sapiens GN=GIN1 PE=2 SV=2
          Length = 522

 Score = 37.4 bits (85), Expect = 0.023
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -3

Query: 234 EDEYLHILQEAHMGIAGGHFSVELTARMVLESGYWWPTLFKDASLFAKGCDEGQCYKFT 58
           E+E   +L+E H   +G H  +  T  +V ES Y+W ++  DA  +   C   Q  K T
Sbjct: 67  EEEKKKVLRECHENDSGAHHGISRTLTLV-ESNYYWTSVTNDAKQWVYACQHCQVAKNT 124


>sp|Q5RBK0|GIN1_PONAB Gypsy retrotransposon integrase-like protein 1
           OS=Pongo abelii GN=GIN1 PE=2 SV=1
          Length = 522

 Score = 35.8 bits (81), Expect = 0.067
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -3

Query: 234 EDEYLHILQEAHMGIAGGHFSVELTARMVLESGYWWPTLFKDASLFAKGCDEGQCYKFT 58
           E+E   +L+E H   +G H  +  T  +V ES Y+W ++  D   +   C   Q  K T
Sbjct: 67  EEEKKKVLRECHENDSGAHHGISRTLTLV-ESNYYWTSVTNDVKQWVYACQHCQVAKNT 124


>sp|Q8K259|GIN1_MOUSE Gypsy retrotransposon integrase-like protein 1
           OS=Mus musculus GN=Gin1 PE=2 SV=2
          Length = 518

 Score = 35.8 bits (81), Expect = 0.067
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = -3

Query: 234 EDEYLHILQEAHMGIAGGHFSVELTARMVLESGYWWPTLFKDASLFAKGCDEGQCYKFT 58
           E+E   +L+E H    G H  +  T  +V ESGY+W ++  D   +   C   Q  K T
Sbjct: 67  EEEKKKVLRECHENGPGVHHGISRTLTLV-ESGYYWTSVTNDVKQWVYACQHCQVAKNT 124


>sp|Q4R6I1|GIN1_MACFA Gypsy retrotransposon integrase-like protein 1
           OS=Macaca fascicularis GN=GIN1 PE=2 SV=1
          Length = 522

 Score = 35.8 bits (81), Expect = 0.067
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -3

Query: 234 EDEYLHILQEAHMGIAGGHFSVELTARMVLESGYWWPTLFKDASLFAKGCDEGQCYKFT 58
           E+E   +L+E H   +G H  +  T  +V ES Y+W ++  D   +   C   Q  K T
Sbjct: 67  EEEKKKVLRECHENDSGAHHGISRTLTLV-ESNYYWTSVTNDVKQWVYACQHCQVAKNT 124


>sp|O93209|POL_FFV Pro-Pol polyprotein OS=Feline foamy virus GN=pol
           PE=3 SV=1
          Length = 1156

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 228 EYLHILQEAHMGIAGGHFSVELTARMVLESGYWWPTLFKDASLFAKGCD 82
           E   +++EAH     G  +V L     ++  YWWP + KD S F   C+
Sbjct: 805 ERYKLIKEAHNISHAGREAVLLK----IQENYWWPKMKKDISSFLSTCN 849


>sp|P12255|FHAB_BORPE Filamentous hemagglutinin OS=Bordetella
            pertussis GN=fhaB PE=1 SV=4
          Length = 3590

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -3

Query: 282  TLYKLGKDDILRCCAREDEYLHILQEAHMGIAG-GHFSVELTARMVLES 139
            +L ++GKD  L   AR+DE+ H+L E  +   G GH   ++  R V+ +
Sbjct: 1861 SLIEVGKDLYLNAGARKDEHRHLLNEGVIQAGGHGHIGGDVDNRSVVRT 1909


>sp|Q66H30|GIN1_RAT Gypsy retrotransposon integrase-like protein 1
           OS=Rattus norvegicus GN=GIN1 PE=2 SV=1
          Length = 518

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -3

Query: 234 EDEYLHILQEAHMGIAGGHFSVELTARMVLESGYWWPTLFKDASLFAKGCDEGQCYKFT 58
           E+E   +L+E H    G H  +  T  +V  S Y+W ++  D   +   C   Q  K T
Sbjct: 67  EEEKKKVLRECHENGPGVHHGISRTLTLVE-SSYYWTSVTNDVKQWVYACQHCQVAKST 124


>sp|O95625|ZBT11_HUMAN Zinc finger and BTB domain-containing protein
           11 OS=Homo sapiens GN=ZBTB11 PE=1 SV=2
          Length = 1053

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
 Frame = -3

Query: 315 KECAPYSLIVGTLYKLGKDDILRCCAREDEYLH------ILQEAHMGIAGGHFSVELTAR 154
           K  A Y +  GTLY   +    +  A  +  L       +++ AH+G  G H +   T  
Sbjct: 35  KAAACYVVRGGTLYYQRRQRHRKTFAELEVVLQPERRRDLIEAAHLGPGGTHHTRHQTWH 94

Query: 153 MVLESGYWWPTLFKDASLFAKGCDEGQ 73
             L   YWW  + K    + K C + Q
Sbjct: 95  Y-LSKTYWWRGILKQVKDYIKQCSKCQ 120


>sp|Q9CX56|PSMD8_MOUSE 26S proteasome non-ATPase regulatory subunit
           8 OS=Mus musculus GN=Psmd8 PE=2 SV=1
          Length = 257

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 165 LTARMVLESGYWWPTLFKDASLFAKGCDEGQCYKFTHNERI 43
           + AR +LE G  W  L KD   F +   + +CY F + E++
Sbjct: 49  ILARDILEIGAQWSILCKDIPSFERYMAQLKCYYFDYKEQL 89
tr_hit_id A5C0S0
Definition tr|A5C0S0|A5C0S0_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 69
Score (bit) 73.9
E-value 4.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919344|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_A04.
         (320 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5C0S0|A5C0S0_VITVI Putative uncharacterized protein OS=Vitis...    74   4e-12
tr|A5BQ47|A5BQ47_VITVI Putative uncharacterized protein OS=Vitis...    74   4e-12
tr|A5B854|A5B854_VITVI Putative uncharacterized protein OS=Vitis...    74   4e-12
tr|A5AWD1|A5AWD1_VITVI Putative uncharacterized protein OS=Vitis...    74   4e-12
tr|A5C265|A5C265_VITVI Putative uncharacterized protein OS=Vitis...    74   5e-12
tr|A5BT93|A5BT93_VITVI Putative uncharacterized protein OS=Vitis...    74   5e-12
tr|A5BPC4|A5BPC4_VITVI Putative uncharacterized protein OS=Vitis...    74   5e-12
tr|A5BB70|A5BB70_VITVI Putative uncharacterized protein OS=Vitis...    74   5e-12
tr|A5AZ01|A5AZ01_VITVI Putative uncharacterized protein OS=Vitis...    74   5e-12
tr|A5AFU0|A5AFU0_VITVI Putative uncharacterized protein OS=Vitis...    74   5e-12
tr|A5CA60|A5CA60_VITVI Putative uncharacterized protein OS=Vitis...    73   6e-12
tr|A5C647|A5C647_VITVI Putative uncharacterized protein OS=Vitis...    73   6e-12
tr|A5BVM1|A5BVM1_VITVI Putative uncharacterized protein OS=Vitis...    73   6e-12
tr|A5B7Z2|A5B7Z2_VITVI Putative uncharacterized protein OS=Vitis...    73   6e-12
tr|A5B147|A5B147_VITVI Putative uncharacterized protein OS=Vitis...    73   6e-12
tr|A5AQ03|A5AQ03_VITVI Putative uncharacterized protein OS=Vitis...    73   6e-12
tr|A5BID3|A5BID3_VITVI Putative uncharacterized protein OS=Vitis...    73   8e-12
tr|A5BH44|A5BH44_VITVI Putative uncharacterized protein OS=Vitis...    73   8e-12
tr|A5BDW3|A5BDW3_VITVI Putative uncharacterized protein OS=Vitis...    73   8e-12
tr|A5BDP7|A5BDP7_VITVI Putative uncharacterized protein OS=Vitis...    73   8e-12
tr|A5AY91|A5AY91_VITVI Putative uncharacterized protein OS=Vitis...    73   8e-12
tr|A5BY78|A5BY78_VITVI Putative uncharacterized protein OS=Vitis...    72   1e-11
tr|A5B7K5|A5B7K5_VITVI Putative uncharacterized protein OS=Vitis...    72   1e-11
tr|A5B5G8|A5B5G8_VITVI Putative uncharacterized protein OS=Vitis...    72   1e-11
tr|A5ATF8|A5ATF8_VITVI Putative uncharacterized protein OS=Vitis...    72   1e-11
tr|A5AM36|A5AM36_VITVI Putative uncharacterized protein OS=Vitis...    72   1e-11
tr|A5BXM1|A5BXM1_VITVI Putative uncharacterized protein OS=Vitis...    72   2e-11
tr|A5AHC2|A5AHC2_VITVI Putative uncharacterized protein OS=Vitis...    72   2e-11
tr|A5BTT2|A5BTT2_VITVI Putative uncharacterized protein OS=Vitis...    71   2e-11
tr|A5BJV3|A5BJV3_VITVI Putative uncharacterized protein OS=Vitis...    71   2e-11

>tr|A5C0S0|A5C0S0_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_032782 PE=4 SV=1
          Length = 1425

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 33/69 (47%), Positives = 42/69 (60%)
 Frame = -3

Query: 279  LYKLGKDDILRCCAREDEYLHILQEAHMGIAGGHFSVELTARMVLESGYWWPTLFKDASL 100
            L+K   D I+R C  E E   IL   H   +GGHF+ + TA  V++SG+WWP+LFKDA  
Sbjct: 1029 LFKYCADQIIRKCVPEQEQSRILSHCHDSASGGHFASQKTAMKVVQSGFWWPSLFKDAHS 1088

Query: 99   FAKGCDEGQ 73
              KGCD  Q
Sbjct: 1089 MCKGCDRCQ 1097


>tr|A5BQ47|A5BQ47_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_017429 PE=4 SV=1
          Length = 573

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 34/69 (49%), Positives = 43/69 (62%)
 Frame = -3

Query: 279 LYKLGKDDILRCCAREDEYLHILQEAHMGIAGGHFSVELTARMVLESGYWWPTLFKDASL 100
           L+K   D I+R C  E E   IL   H    GGHF+ + TA  VL+SG+WWP+LFKDA  
Sbjct: 184 LFKYCADQIIRKCVPEQEKHGILSHCHENACGGHFASQKTAMRVLQSGFWWPSLFKDAQE 243

Query: 99  FAKGCDEGQ 73
            +KGCD+ Q
Sbjct: 244 VSKGCDKCQ 252


>tr|A5B854|A5B854_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_003321 PE=4 SV=1
          Length = 879

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 34/69 (49%), Positives = 43/69 (62%)
 Frame = -3

Query: 279 LYKLGKDDILRCCAREDEYLHILQEAHMGIAGGHFSVELTARMVLESGYWWPTLFKDASL 100
           L+K   D I+R C  E E   IL   H    GGHF+ + TA  VL+SG+WWP+LFKDA  
Sbjct: 503 LFKYCADQIIRKCVPEQEKHGILSHCHENACGGHFAFQKTAMRVLQSGFWWPSLFKDAHE 562

Query: 99  FAKGCDEGQ 73
            +KGCD+ Q
Sbjct: 563 VSKGCDKCQ 571


>tr|A5AWD1|A5AWD1_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_028047 PE=4 SV=1
          Length = 1817

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 34/69 (49%), Positives = 43/69 (62%)
 Frame = -3

Query: 279  LYKLGKDDILRCCAREDEYLHILQEAHMGIAGGHFSVELTARMVLESGYWWPTLFKDASL 100
            L+K   D I+R C  E E   IL   H    GGHF+ + TA  VL+SG+WWP+LFKDA  
Sbjct: 1442 LFKYCADQIIRKCVPEQEKHGILSHCHXNACGGHFASQKTAMRVLQSGFWWPSLFKDAHE 1501

Query: 99   FAKGCDEGQ 73
             +KGCD+ Q
Sbjct: 1502 VSKGCDKCQ 1510


>tr|A5C265|A5C265_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_009564 PE=4 SV=1
          Length = 2225

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 34/69 (49%), Positives = 43/69 (62%)
 Frame = -3

Query: 279  LYKLGKDDILRCCAREDEYLHILQEAHMGIAGGHFSVELTARMVLESGYWWPTLFKDASL 100
            L+K   D I+R C  E E   IL   H    GGHF+ + TA  VL+SG+WWP+LFKDA  
Sbjct: 1753 LFKYCADQIIRKCVPEQEKHGILSHCHENACGGHFASQKTAMRVLQSGFWWPSLFKDAHE 1812

Query: 99   FAKGCDEGQ 73
             +KGCD+ Q
Sbjct: 1813 VSKGCDKCQ 1821


>tr|A5BT93|A5BT93_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_001028 PE=4 SV=1
          Length = 1184

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 34/69 (49%), Positives = 43/69 (62%)
 Frame = -3

Query: 279 LYKLGKDDILRCCAREDEYLHILQEAHMGIAGGHFSVELTARMVLESGYWWPTLFKDASL 100
           L+K   D I+R C  E E   IL   H    GGHF+ + TA  VL+SG+WWP+LFKDA  
Sbjct: 706 LFKYCADQIIRKCVPEQEKHGILSHCHENACGGHFASQKTAMRVLQSGFWWPSLFKDAHE 765

Query: 99  FAKGCDEGQ 73
            +KGCD+ Q
Sbjct: 766 VSKGCDKCQ 774


>tr|A5BPC4|A5BPC4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_027343 PE=4 SV=1
          Length = 694

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 34/69 (49%), Positives = 43/69 (62%)
 Frame = -3

Query: 279 LYKLGKDDILRCCAREDEYLHILQEAHMGIAGGHFSVELTARMVLESGYWWPTLFKDASL 100
           L+K   D I+R C  E E   IL   H    GGHF+ + TA  VL+SG+WWP+LFKDA  
Sbjct: 200 LFKYCADQIIRKCVPEQEKHGILSHCHENACGGHFASQKTAMRVLQSGFWWPSLFKDAHE 259

Query: 99  FAKGCDEGQ 73
            +KGCD+ Q
Sbjct: 260 VSKGCDKCQ 268


>tr|A5BB70|A5BB70_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_020252 PE=4 SV=1
          Length = 931

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 34/69 (49%), Positives = 43/69 (62%)
 Frame = -3

Query: 279 LYKLGKDDILRCCAREDEYLHILQEAHMGIAGGHFSVELTARMVLESGYWWPTLFKDASL 100
           L+K   D I+R C  E E   IL   H    GGHF+ + TA  VL+SG+WWP+LFKDA  
Sbjct: 490 LFKYCADQIIRKCVPEQEKHGILSHCHENACGGHFASQKTAMRVLQSGFWWPSLFKDAHE 549

Query: 99  FAKGCDEGQ 73
            +KGCD+ Q
Sbjct: 550 VSKGCDKCQ 558


>tr|A5AZ01|A5AZ01_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_017288 PE=4 SV=1
          Length = 1481

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 34/73 (46%), Positives = 42/73 (57%)
 Frame = -3

Query: 279  LYKLGKDDILRCCAREDEYLHILQEAHMGIAGGHFSVELTARMVLESGYWWPTLFKDASL 100
            L+K   D I+R C  E E   IL   H    GGHF+ + TA  V++SG+WWP+LFKDA  
Sbjct: 1256 LFKYCADQIIRKCVPEQEQSGILSHCHDSACGGHFASQKTAMKVIQSGFWWPSLFKDAHS 1315

Query: 99   FAKGCDEGQCYKF 61
              KGCD  Q   F
Sbjct: 1316 MCKGCDRCQRLDF 1328


>tr|A5AFU0|A5AFU0_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_007452 PE=4 SV=1
          Length = 1923

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 34/69 (49%), Positives = 43/69 (62%)
 Frame = -3

Query: 279  LYKLGKDDILRCCAREDEYLHILQEAHMGIAGGHFSVELTARMVLESGYWWPTLFKDASL 100
            L+K   D I+R C  E E   IL   H    GGHF+ + TA  VL+SG+WWP+LFKDA  
Sbjct: 1347 LFKYCADQIIRKCVPEQEKHGILSHCHGNACGGHFASQKTAMRVLQSGFWWPSLFKDAHE 1406

Query: 99   FAKGCDEGQ 73
             +KGCD+ Q
Sbjct: 1407 ISKGCDKCQ 1415