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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919347
Clone id YMU001_000124_A07
Library
Length 511
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000124_A07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATTGAAATCAATGCCTCCTAATTTTACAGTGACTTAGAAAGCAAAGTTCTCTTCATTAGG
AAATCTCTGCTGTTCACAGTTCATTCCTGATGTGAGGTAGCAACTCCACCTTTACAAATC
AACATGTAGACAGGTTTAAACCCTTTTCCCTCCACATGCTAAAGTTTCAATTTGCTCGGT
CATTTCATAAATTAGTGCCTTTAATCCCGATCTGTAGCTGGGGTACATCAACTGCACCTG
TAGGTCATCCTTAAGACGTGTGTTTTGAACCCTCTTTTCCGGACTGCGACGTAACTTATG
GACCTCCTCCACGTTTGATGATCCTTCCAGATTTGTCGGTTCTACCAAATGCTTCATTTG
AGGCCATCTCTCACATAATATACTCTTGGCATAAGAGAATACTTCACTTCGTGATGCAGG
ATCATCATCGACAACATTGTAGATTTGTCCAGGACAAGGTGACTAGATGCTTGCCATAAC
TACTTGGCAAATATCTGAGACATGAATGCGT
■■Homology search results ■■ -
sp_hit_id Q9UUA9
Definition sp|Q9UUA9|TSR2_SCHPO Pre-rRNA-processing protein tsr2 OS=Schizosaccharomyces pombe
Align length 29
Score (bit) 32.0
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919347|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_A07.
         (511 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UUA9|TSR2_SCHPO Pre-rRNA-processing protein tsr2 OS=Schizos...    32   1.7  
sp|P29150|POL1_TORVR RNA1 polyprotein OS=Tomato ringspot virus (...    30   5.0  
sp|Q1GYD4|GATB_METFK Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf...    30   6.5  
sp|Q4R7V3|FR1OP_MACFA FGFR1 oncogene partner OS=Macaca fascicula...    30   6.5  

>sp|Q9UUA9|TSR2_SCHPO Pre-rRNA-processing protein tsr2
           OS=Schizosaccharomyces pombe GN=tsr2 PE=2 SV=1
          Length = 179

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 426 DDPASRSEVFSYAKSILCERWPQMKHLVE 340
           DDP+ R   F YA  +L   WP MK  VE
Sbjct: 3   DDPSKRLTYFEYAVGVLLCSWPVMKQAVE 31


>sp|P29150|POL1_TORVR RNA1 polyprotein OS=Tomato ringspot virus
           (isolate raspberry) PE=1 SV=2
          Length = 2197

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 417 ASRSEVFSYAKSILCERWPQMKHLVEPTNLEG 322
           AS  E +   +SIL E WP+ ++L  P +  G
Sbjct: 323 ASHQEAYDSCRSILIEEWPESRYLFGPLSFVG 354


>sp|Q1GYD4|GATB_METFK Aspartyl/glutamyl-tRNA(Asn/Gln)
           amidotransferase subunit B OS=Methylobacillus
           flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=gatB
           PE=3 SV=1
          Length = 477

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 26/97 (26%), Positives = 45/97 (46%)
 Frame = -2

Query: 435 VVDDDPASRSEVFSYAKSILCERWPQMKHLVEPTNLEGSSNVEEVHKLRRSPEKRVQNTR 256
           V + D  S +E  +YA+ +      Q  ++ +    EGS   +    +RR  ++++   R
Sbjct: 154 VTEPDMRSAAEAVAYARKL--HELVQWINICDGNMQEGSFRCDVNVSVRRKGQEKLGTRR 211

Query: 255 LKDDLQVQLMYPSYRSGLKALIYEMTEQIETLACGGK 145
              +L       S+R   +A+ +E   QIETL  GGK
Sbjct: 212 EIKNLN------SFRFMQQAIEFETRWQIETLEDGGK 242


>sp|Q4R7V3|FR1OP_MACFA FGFR1 oncogene partner OS=Macaca fascicularis
           GN=FGFR1OP PE=2 SV=1
          Length = 379

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
 Frame = -2

Query: 339 PTNLEGSSNVEEVHKLRRSPE----------KRVQNTRLKDDLQVQLMYPSYRSGLKALI 190
           PT  EG+ ++ +VH   +SPE          K+  N   + D  V L  P  +S L  L 
Sbjct: 142 PTTGEGALDLSDVHPPPKSPEGKTSAQTTPSKKANNEANQSDTSVSLSEPKSKSSLHLLS 201

Query: 189 YE 184
           +E
Sbjct: 202 HE 203
tr_hit_id Q9FXG7
Definition tr|Q9FXG7|Q9FXG7_ARATH F6F9.26 protein OS=Arabidopsis thaliana
Align length 110
Score (bit) 96.7
E-value 6.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919347|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_A07.
         (511 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9FXG7|Q9FXG7_ARATH F6F9.26 protein OS=Arabidopsis thaliana G...    97   6e-19
tr|Q147R9|Q147R9_ARATH At1g19690 OS=Arabidopsis thaliana PE=2 SV=1     97   6e-19
tr|A7NT68|A7NT68_VITVI Chromosome chr18 scaffold_1, whole genome...    96   8e-19
tr|A5ASP3|A5ASP3_VITVI Putative uncharacterized protein OS=Vitis...    96   8e-19
tr|Q8LFY7|Q8LFY7_ARATH Putative uncharacterized protein OS=Arabi...    94   4e-18
tr|Q1EPB7|Q1EPB7_MUSAC Putative uncharacterized protein (Fragmen...    91   4e-17
tr|B4F8E5|B4F8E5_MAIZE Nucleoside-diphosphate-sugar epimerase OS...    87   4e-16
tr|Q5NAS7|Q5NAS7_ORYSJ cDNA clone:J033071B09, full insert sequen...    86   8e-16
tr|A2ZRH2|A2ZRH2_ORYSJ Putative uncharacterized protein OS=Oryza...    86   8e-16
tr|A2WN40|A2WN40_ORYSI Putative uncharacterized protein OS=Oryza...    86   8e-16
tr|A3TW83|A3TW83_9RHOB Putative uncharacterized protein OS=Ocean...    84   5e-15
tr|A4F0M6|A4F0M6_9RHOB Putative uncharacterized protein OS=Roseo...    81   3e-14
tr|A9T7I3|A9T7I3_PHYPA Predicted protein OS=Physcomitrella paten...    81   3e-14
tr|A3V1P4|A3V1P4_9RHOB Putative uncharacterized protein OS=Lokta...    80   4e-14
tr|Q28VS2|Q28VS2_JANSC NAD-dependent epimerase/dehydratase OS=Ja...    80   6e-14
tr|B7QTJ5|B7QTJ5_9RHOB NAD-dependent epimerase/dehydratase OS=Ru...    80   6e-14
tr|B6B564|B6B564_9RHOB NAD-dependent epimerase/dehydratase OS=Rh...    80   8e-14
tr|A6E1C6|A6E1C6_9RHOB Putative uncharacterized protein OS=Roseo...    79   1e-13
tr|B6B1X6|B6B1X6_9RHOB NAD-dependent epimerase/dehydratase OS=Rh...    79   2e-13
tr|A3W5C0|A3W5C0_9RHOB Putative uncharacterized protein OS=Roseo...    78   2e-13
tr|Q3YIB2|Q3YIB2_ARATH At1g19690 (Fragment) OS=Arabidopsis thali...    78   2e-13
tr|A9F9M9|A9F9M9_9RHOB Putative uncharacterized protein OS=Phaeo...    78   3e-13
tr|Q3YIB4|Q3YIB4_ARATH At1g19690 (Fragment) OS=Arabidopsis thali...    78   3e-13
tr|Q1GCF2|Q1GCF2_SILST Putative uncharacterized protein OS=Silic...    77   4e-13
tr|A9G5M7|A9G5M7_9RHOB NAD-dependent epimerase/dehydratase OS=Ph...    77   5e-13
tr|A3SKD3|A3SKD3_9RHOB Putative uncharacterized protein OS=Roseo...    77   5e-13
tr|Q3YI71|Q3YI71_ARALY At1g19690-like protein (Fragment) OS=Arab...    77   5e-13
tr|A4WWB6|A4WWB6_RHOS5 NAD-dependent epimerase/dehydratase OS=Rh...    77   6e-13
tr|Q2CK73|Q2CK73_9RHOB Putative uncharacterized protein OS=Ocean...    77   6e-13
tr|Q0FQ45|Q0FQ45_9RHOB Putative uncharacterized protein OS=Roseo...    77   6e-13

>tr|Q9FXG7|Q9FXG7_ARATH F6F9.26 protein OS=Arabidopsis thaliana
           GN=F6F9.26 PE=4 SV=1
          Length = 167

 Score = 96.7 bits (239), Expect = 6e-19
 Identities = 53/110 (48%), Positives = 71/110 (64%)
 Frame = -2

Query: 510 RIHVSDICQVVMASI*SPCPGQIYNVVDDDPASRSEVFSYAKSILCERWPQMKHLVEPTN 331
           R+HV DICQV+ A+   P  G+IYN+VDDDPA+R EVF YA  ++ +RWP      +P  
Sbjct: 59  RVHVEDICQVLKAATEKPASGEIYNIVDDDPAAREEVFEYALELIEKRWPG-NITTKPFP 117

Query: 330 LEGSSNVEEVHKLRRSPEKRVQNTRLKDDLQVQLMYPSYRSGLKALIYEM 181
               S  E    LR   EKRV N R+KD L V+L+YPSY+SGL++++  M
Sbjct: 118 FLYESREES--SLR--GEKRVCNERMKDKLGVKLLYPSYKSGLQSIVENM 163


>tr|Q147R9|Q147R9_ARATH At1g19690 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 352

 Score = 96.7 bits (239), Expect = 6e-19
 Identities = 53/110 (48%), Positives = 71/110 (64%)
 Frame = -2

Query: 510 RIHVSDICQVVMASI*SPCPGQIYNVVDDDPASRSEVFSYAKSILCERWPQMKHLVEPTN 331
           R+HV DICQV+ A+   P  G+IYN+VDDDPA+R EVF YA  ++ +RWP      +P  
Sbjct: 244 RVHVEDICQVLKAATEKPASGEIYNIVDDDPAAREEVFEYALELIEKRWPG-NITTKPFP 302

Query: 330 LEGSSNVEEVHKLRRSPEKRVQNTRLKDDLQVQLMYPSYRSGLKALIYEM 181
               S  E    LR   EKRV N R+KD L V+L+YPSY+SGL++++  M
Sbjct: 303 FLYESREES--SLR--GEKRVCNERMKDKLGVKLLYPSYKSGLQSIVENM 348


>tr|A7NT68|A7NT68_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014555001
           PE=4 SV=1
          Length = 351

 Score = 96.3 bits (238), Expect = 8e-19
 Identities = 50/114 (43%), Positives = 75/114 (65%)
 Frame = -2

Query: 510 RIHVSDICQVVMASI*SPCPGQIYNVVDDDPASRSEVFSYAKSILCERWPQMKHLVEPTN 331
           R+HV+DICQ + A+I  P  G+IYN+VDDDPA R++VF++A+ ++ ++WP   H+ E   
Sbjct: 248 RVHVADICQALKATIQIPSVGKIYNIVDDDPAPRAQVFAFARDLIEKKWP--NHIKESV- 304

Query: 330 LEGSSNVEEVHKLRRSPEKRVQNTRLKDDLQVQLMYPSYRSGLKALIYEMTEQI 169
             GS+         R  EKRV N R+K +L V L++P+YRSGL+++I  M   I
Sbjct: 305 FPGSA---------RQAEKRVSNARMKKELGVTLLHPTYRSGLQSIIDNMENPI 349


>tr|A5ASP3|A5ASP3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_043063 PE=4 SV=1
          Length = 351

 Score = 96.3 bits (238), Expect = 8e-19
 Identities = 50/114 (43%), Positives = 75/114 (65%)
 Frame = -2

Query: 510 RIHVSDICQVVMASI*SPCPGQIYNVVDDDPASRSEVFSYAKSILCERWPQMKHLVEPTN 331
           R+HV+DICQ + A+I  P  G+IYN+VDDDPA R++VF++A+ ++ ++WP   H+ E   
Sbjct: 248 RVHVADICQALKATIQIPSVGKIYNIVDDDPAPRAQVFAFARDLIEKKWP--NHIKESV- 304

Query: 330 LEGSSNVEEVHKLRRSPEKRVQNTRLKDDLQVQLMYPSYRSGLKALIYEMTEQI 169
             GS+         R  EKRV N R+K +L V L++P+YRSGL+++I  M   I
Sbjct: 305 FPGSA---------RQAEKRVSNARMKKELGVTLLHPTYRSGLQSIIDNMXNPI 349


>tr|Q8LFY7|Q8LFY7_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 352

 Score = 94.0 bits (232), Expect = 4e-18
 Identities = 52/110 (47%), Positives = 70/110 (63%)
 Frame = -2

Query: 510 RIHVSDICQVVMASI*SPCPGQIYNVVDDDPASRSEVFSYAKSILCERWPQMKHLVEPTN 331
           R+HV DICQV+ A+   P  G+IYN+VDDDPA+R EVF YA  ++ +RWP      +P  
Sbjct: 244 RVHVEDICQVLKAATEKPASGEIYNIVDDDPAAREEVFEYALELIEKRWPG-NITTKPFP 302

Query: 330 LEGSSNVEEVHKLRRSPEKRVQNTRLKDDLQVQLMYPSYRSGLKALIYEM 181
               S  E    LR   EKRV N R+KD L V+L+YP Y+SGL++++  M
Sbjct: 303 FLYESREES--SLR--GEKRVCNERMKDKLGVKLLYPWYKSGLQSIVENM 348


>tr|Q1EPB7|Q1EPB7_MUSAC Putative uncharacterized protein (Fragment)
           OS=Musa acuminata GN=MA4_54N07.2 PE=4 SV=1
          Length = 218

 Score = 90.5 bits (223), Expect = 4e-17
 Identities = 49/107 (45%), Positives = 68/107 (63%)
 Frame = -2

Query: 510 RIHVSDICQVVMASI*SPCPGQIYNVVDDDPASRSEVFSYAKSILCERWPQMKHLVEPTN 331
           R+HV+D+ Q + AS+     G+IYNVVDDDPA R EVF++A+S+L ERW         T 
Sbjct: 109 RVHVADVYQAIKASMEILSSGRIYNVVDDDPAPRQEVFAFAQSLLEERW-------AGTV 161

Query: 330 LEGSSNVEEVHKLRRSPEKRVQNTRLKDDLQVQLMYPSYRSGLKALI 190
            +  +N  + HK     EKRV N RLK++L V L+YP YR GL+ ++
Sbjct: 162 CKLDNNDMKPHKSLARCEKRVSNARLKEELGVSLLYPMYRLGLRNIL 208


>tr|B4F8E5|B4F8E5_MAIZE Nucleoside-diphosphate-sugar epimerase
           OS=Zea mays PE=2 SV=1
          Length = 329

 Score = 87.4 bits (215), Expect = 4e-16
 Identities = 46/107 (42%), Positives = 72/107 (67%)
 Frame = -2

Query: 510 RIHVSDICQVVMASI*SPCPGQIYNVVDDDPASRSEVFSYAKSILCERWPQMKHLVEPTN 331
           RIHV+DI Q V+AS+   C  +I+NVVDDDPA R+EVF++A S++  R+P M  + E   
Sbjct: 213 RIHVADIYQAVLASMSIRCARKIFNVVDDDPAPRAEVFAFATSLIQRRYPDM--ITE--T 268

Query: 330 LEGSSNVEEVHKLRRSPEKRVQNTRLKDDLQVQLMYPSYRSGLKALI 190
           ++      +  ++    EKRV N R+K +L V L++P+YRSGL++++
Sbjct: 269 IDAKPAGLDYQEMIVPAEKRVSNARMKQELGVNLLHPTYRSGLQSIL 315


>tr|Q5NAS7|Q5NAS7_ORYSJ cDNA clone:J033071B09, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0699D11.27-1 PE=2
           SV=1
          Length = 175

 Score = 86.3 bits (212), Expect = 8e-16
 Identities = 47/107 (43%), Positives = 72/107 (67%)
 Frame = -2

Query: 510 RIHVSDICQVVMASI*SPCPGQIYNVVDDDPASRSEVFSYAKSILCERWPQMKHLVEPTN 331
           RIHV+DICQ ++AS+      +IYNVVDDDPA RSEVF++A+S++     + KH   P  
Sbjct: 61  RIHVADICQAILASMSIRSARRIYNVVDDDPAPRSEVFAFARSLV-----ERKH---PGL 112

Query: 330 LEGSSNVEEVHKLRRSPEKRVQNTRLKDDLQVQLMYPSYRSGLKALI 190
           +  S  +        + EKRV N RLK++L V+L++P+Y+SGL++++
Sbjct: 113 IMDSVVLPATQDRIVAAEKRVSNARLKEELGVKLLHPTYKSGLQSIL 159


>tr|A2ZRH2|A2ZRH2_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_001144 PE=4 SV=1
          Length = 350

 Score = 86.3 bits (212), Expect = 8e-16
 Identities = 47/107 (43%), Positives = 72/107 (67%)
 Frame = -2

Query: 510 RIHVSDICQVVMASI*SPCPGQIYNVVDDDPASRSEVFSYAKSILCERWPQMKHLVEPTN 331
           RIHV+DICQ ++AS+      +IYNVVDDDPA RSEVF++A+S++     + KH   P  
Sbjct: 236 RIHVADICQAILASMSIRSARRIYNVVDDDPAPRSEVFAFARSLV-----ERKH---PGL 287

Query: 330 LEGSSNVEEVHKLRRSPEKRVQNTRLKDDLQVQLMYPSYRSGLKALI 190
           +  S  +        + EKRV N RLK++L V+L++P+Y+SGL++++
Sbjct: 288 IMDSVVLPATQDRIVAAEKRVSNARLKEELGVKLLHPTYKSGLQSIL 334


>tr|A2WN40|A2WN40_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_01268 PE=4 SV=1
          Length = 363

 Score = 86.3 bits (212), Expect = 8e-16
 Identities = 47/107 (43%), Positives = 72/107 (67%)
 Frame = -2

Query: 510 RIHVSDICQVVMASI*SPCPGQIYNVVDDDPASRSEVFSYAKSILCERWPQMKHLVEPTN 331
           RIHV+DICQ ++AS+      +IYNVVDDDPA RSEVF++A+S++     + KH   P  
Sbjct: 249 RIHVADICQAILASMSIRSARRIYNVVDDDPAPRSEVFAFARSLV-----ERKH---PGL 300

Query: 330 LEGSSNVEEVHKLRRSPEKRVQNTRLKDDLQVQLMYPSYRSGLKALI 190
           +  S  +        + EKRV N RLK++L V+L++P+Y+SGL++++
Sbjct: 301 IMDSVVLPATQDRIVAAEKRVSNARLKEELGVKLLHPTYKSGLQSIL 347