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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919353
Clone id YMU001_000124_B02
Library
Length 531
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000124_B02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TCTTGGAGCTAACCAGGTTGCCCAACATTTTAATTTTTGAGGAAGATAGCATCTATGTTT
GGCATACCTTTCATGTTATCAACGTAGTTCTAGACATTGCTCAAGGTGGTCGTATCAAAT
ACAAATAGACAAACTGAAAAATACCAAGAAATAAAGTAAACCATAAGTGATACAGCAAGT
TCAAGGAGTACCAAATTGTACCAAATTTGGTACTGTAATAGTGGACAGGAGTGCATCCAA
GTTCAACACAATACCAAAAAGTACCAAATTTGGTACTGTAATAGTGGACCGATGTGCACC
CAAGTTCAACAATACCAGAAAGTAGAGAACCAGATAGAGCAATAAAGTAAACCATAAGTG
ATACAACAAGTTCAACCAGTTCCAATATGGTACTGTAATAGTGGACAGACGTGCACCCAA
GTTCAACGGTACCAAAAAGTACCAAATTTGGTACTGTAATAGTGGACAGAGAAGCACCCA
AGTTCAACAGTACCAAAATGTACCAAATGCACATATAGTGAGGACAACTGA
■■Homology search results ■■ -
sp_hit_id A2BIU7
Definition sp|A2BIU7|DGGGP_HYPBU Digeranylgeranylglyceryl phosphate synthase OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403)
Align length 38
Score (bit) 32.3
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919353|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_B02.
         (531 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A2BIU7|DGGGP_HYPBU Digeranylgeranylglyceryl phosphate synthas...    32   1.4  
sp|Q4P384|YTH1_USTMA mRNA 3'-end-processing protein YTH1 OS=Usti...    31   4.3  
sp|Q5GH56|XKR7_RAT XK-related protein 7 OS=Rattus norvegicus GN=...    30   7.2  
sp|Q5GH64|XKR7_MOUSE XK-related protein 7 OS=Mus musculus GN=Xkr...    30   7.2  
sp|P27545|LASS1_MOUSE LAG1 longevity assurance homolog 1 OS=Mus ...    30   7.2  

>sp|A2BIU7|DGGGP_HYPBU Digeranylgeranylglyceryl phosphate synthase
           OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403)
           GN=Hbut_0025 PE=3 SV=1
          Length = 302

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 505 WYILVLLNLGASLSTITVPNLVLFGTVELGCTSVHYYS 392
           +Y  +L  +G  ++ +T PN ++FG   L    VH YS
Sbjct: 95  FYAYMLFTIGLIIALVTCPNFIVFGFAVLNALLVHEYS 132


>sp|Q4P384|YTH1_USTMA mRNA 3'-end-processing protein YTH1
           OS=Ustilago maydis GN=YTH1 PE=3 SV=1
          Length = 366

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 7/38 (18%)
 Frame = +1

Query: 211 YCNSGQECIQV-------QHNTKKYQIWYCNSGPMCTQ 303
           +CNSG +C+ +       +   ++Y   +C  GP+CT+
Sbjct: 146 FCNSGDDCLYLHVDPAIKRRECERYNRGFCPKGPLCTK 183


>sp|Q5GH56|XKR7_RAT XK-related protein 7 OS=Rattus norvegicus
           GN=Xkr7 PE=2 SV=1
          Length = 580

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
 Frame = -3

Query: 328 SLLSGIVELGCTSVHYYSTKFG------TFWYCVEL----GCTPVHYYSTKFGTIWYSLN 179
           +++ GI+ + C    +++ K G      T +YC+ L      T   Y S  F T +YSL 
Sbjct: 361 NMVVGIIYIFC----WFNVKEGRSRRRVTLYYCIVLLENAALTGFWYSSRNFSTDFYSLI 416

Query: 178 LLYHLWFTLFLGI-FQFVYLYLIRP 107
           L+  +  +  LGI F  VY  L+ P
Sbjct: 417 LVCVVASSFALGIFFMCVYYCLLHP 441


>sp|Q5GH64|XKR7_MOUSE XK-related protein 7 OS=Mus musculus GN=Xkr7
           PE=2 SV=1
          Length = 580

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
 Frame = -3

Query: 328 SLLSGIVELGCTSVHYYSTKFG------TFWYCVEL----GCTPVHYYSTKFGTIWYSLN 179
           +++ GI+ + C    +++ K G      T +YC+ L      T   Y S  F T +YSL 
Sbjct: 361 NMVVGIIYIFC----WFNVKEGRSRRRVTLYYCIVLLENAALTGFWYSSRNFSTDFYSLI 416

Query: 178 LLYHLWFTLFLGI-FQFVYLYLIRP 107
           L+  +  +  LGI F  VY  L+ P
Sbjct: 417 LVCVVASSFALGIFFMCVYYCLLHP 441


>sp|P27545|LASS1_MOUSE LAG1 longevity assurance homolog 1 OS=Mus
           musculus GN=Lass1 PE=1 SV=1
          Length = 350

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 22/87 (25%), Positives = 38/87 (43%)
 Frame = -2

Query: 365 CITYGLLYCSIWFSTFWYC*TWVHIGPLLQYQIWYFLVLC*TWMHSCPLLQYQIWYNLVL 186
           C+++   +C  WF  +W+        PL   ++ Y    C   + S P + Y  ++N++L
Sbjct: 244 CLSF--CFCWFWFRLYWF--------PL---KVLY--ATCHCSLQSVPDIPYYFFFNILL 288

Query: 185 LELAVSLMVYFISWYFSVCLFVFDTTT 105
           L     LMV  I W+  +  F     T
Sbjct: 289 L----LLMVMNIYWFLYIVAFAAKVLT 311
tr_hit_id Q3ABW9
Definition tr|Q3ABW9|Q3ABW9_CARHZ Putative sugar ABC transporter, permease protein OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008)
Align length 102
Score (bit) 38.5
E-value 0.21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919353|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_B02.
         (531 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3ABW9|Q3ABW9_CARHZ Putative sugar ABC transporter, permease ...    39   0.21 
tr|Q4DDC0|Q4DDC0_TRYCR Putative uncharacterized protein OS=Trypa...    36   1.4  
tr|Q11WP9|Q11WP9_CYTH3 Acyltransferase family protein OS=Cytopha...    35   3.1  
tr|Q7KPX1|Q7KPX1_CAEEL Serpentine receptor, class x protein 14 O...    35   3.1  
tr|A1DS47|A1DS47_TRYCR Cytochrome c oxidase subunit 3 OS=Trypano...    35   3.1  
tr|Q465D3|Q465D3_METBF Putative uncharacterized protein OS=Metha...    34   4.0  
tr|Q9B8Y5|Q9B8Y5_FASHE NADH dehydrogenase subunit 2 OS=Fasciola ...    26   5.7  
tr|A8XRV8|A8XRV8_CAEBR Putative uncharacterized protein OS=Caeno...    33   6.9  
tr|B5ENJ9|B5ENJ9_ACIF5 Heme/copper-type cytochrome/quinol oxidas...    33   9.0  
tr|B7J5T0|B7J5T0_THIFE Cytochrome o ubiquinol oxidase, subunit I...    33   9.0  
tr|A8WSI0|A8WSI0_CAEBR Putative uncharacterized protein OS=Caeno...    33   9.0  
tr|A7RXV3|A7RXV3_NEMVE Predicted protein (Fragment) OS=Nematoste...    33   9.0  

>tr|Q3ABW9|Q3ABW9_CARHZ Putative sugar ABC transporter, permease
           protein OS=Carboxydothermus hydrogenoformans (strain
           Z-2901 / DSM 6008) GN=CHY_1533 PE=4 SV=1
          Length = 305

 Score = 38.5 bits (88), Expect = 0.21
 Identities = 25/102 (24%), Positives = 53/102 (51%)
 Frame = -2

Query: 320 FWYC*TWVHIGPLLQYQIWYFLVLC*TWMHSCPLLQYQIWYNLVLLELAVSLMVYFISWY 141
           FW     +H GP+  + +   + +    +H+   + Y++  + ++  +A++++ Y ++ +
Sbjct: 47  FWGAYGALHYGPVGGFLLAIAMGMLVALIHAVVTVTYRV--DQIVSGVAINILAYGLARF 104

Query: 140 FSVCLFVFDTTTLSNV*NYVDNMKGMPNIDAIFLKN*NVGQP 15
           FS+ LF   TT+ S        + G+P ID   LKN +V +P
Sbjct: 105 FSIALFGMATTSPS--------VNGLPKIDIPILKNISVLKP 138


>tr|Q4DDC0|Q4DDC0_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053505193.50 PE=4 SV=1
          Length = 362

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 29/125 (23%), Positives = 45/125 (36%), Gaps = 12/125 (9%)
 Frame = -2

Query: 458 YSTKFGTFWYR*TWVHVCPLLQYHIGTG*TCCITYGLLYCSIWFSTFWYC*TWVHIGPLL 279
           Y      + Y   W++ C  L         C      LY  +W   + Y   W++    L
Sbjct: 122 YGCMLCVWLYACVWLYACVWLY-------ACVWLCVWLYACVWLCVWLYACVWLYACVWL 174

Query: 278 QYQIW-------YFLVLC*TWMHSCPLLQYQIW-YNLVLLELAVSL----MVYFISWYFS 135
              +W       Y  V    W+++C  L   +W Y  V L   V L     +Y   W ++
Sbjct: 175 YACVWLYACVWLYACVWLCVWLYACVWLYACVWLYACVWLYACVWLYACVWLYACVWLYA 234

Query: 134 VCLFV 120
           VC+ V
Sbjct: 235 VCMAV 239


>tr|Q11WP9|Q11WP9_CYTH3 Acyltransferase family protein OS=Cytophaga
           hutchinsonii (strain ATCC 33406 / NCIMB 9469)
           GN=CHU_0886 PE=4 SV=1
          Length = 358

 Score = 34.7 bits (78), Expect = 3.1
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
 Frame = -2

Query: 335 IWFST--------FWYC*TWVHIGPLLQYQIWYFLVLC*TWMHSCPLLQYQIWYNLVLLE 180
           IWFS+        FW           L Y++WY+++    W+++    +Y I   L+ L 
Sbjct: 128 IWFSSAKPPTNAPFWS----------LAYEVWYYIIFA-VWIYAVKWKRY-ILLALIFLC 175

Query: 179 LAVSLMVYFISWYFSVCLFVFDTTTLSNV 93
           +   +++ F  W   V LF     T+S +
Sbjct: 176 IGYKIVLLFPIWLMGVALFKLSKHTVSTI 204


>tr|Q7KPX1|Q7KPX1_CAEEL Serpentine receptor, class x protein 14
           OS=Caenorhabditis elegans GN=srx-14 PE=2 SV=1
          Length = 318

 Score = 34.7 bits (78), Expect = 3.1
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 11/112 (9%)
 Frame = -2

Query: 434 WYR*TWVHV----CPLLQYHIGTG*TCCIT-YGLLYCSIWFSTFWYC*TWVHIGPLLQYQ 270
           W    W H+    C LL  HI +      +    ++C I    F +  ++  IGPL  Y+
Sbjct: 119 WISIIWSHILLSLCSLLSVHIPSRNQSIFSRQNCIFCLI----FIFSLSFFEIGPLFAYE 174

Query: 269 IWYFLVLC*TWMHSCPLLQYQIWYNLVLLELAVSLMVYF------ISWYFSV 132
             +      TW  S P  +    Y L++L+L   L++         +W F+V
Sbjct: 175 TCFIAYQPATWQWSAPTKKSCATYRLLVLQLLSDLLLVVTVVGNCATWIFAV 226


>tr|A1DS47|A1DS47_TRYCR Cytochrome c oxidase subunit 3
           OS=Trypanosoma cruzi GN=COIII PE=2 SV=1
          Length = 288

 Score = 34.7 bits (78), Expect = 3.1
 Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
 Frame = -2

Query: 368 CCITYGLLYCSIWF--STF--WYC*TWVHIGPLLQYQIWYFLVLC*TWMHSCPLLQYQI- 204
           CC+   + YC IWF  S F  +     V  G  L     +  V C   +  C L  Y   
Sbjct: 80  CCLLRVVQYCFIWFVISEFILFMAFFTVVFGLCLFLCCEFAFVFCLPLLFCCLLCDYGFV 139

Query: 203 --WYNLVLLELAVSLMVYFISWYF-SVCLFVF 117
             WY L L  L ++    F+S  F + CLF F
Sbjct: 140 FYWYFLDLFNLLINTFYLFVSGLFVNFCLFCF 171


>tr|Q465D3|Q465D3_METBF Putative uncharacterized protein
           OS=Methanosarcina barkeri (strain Fusaro / DSM 804)
           GN=Mbar_A3645 PE=4 SV=1
          Length = 387

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 15/94 (15%)
 Frame = -3

Query: 346 FIALSGSLLSGIVELGCTSVHYYSTK----------FGTFWYCVELGCTPVHYYSTKFGT 197
           FI +SG +LS I +   +   +Y+ +          F  F+  + +G + ++  +     
Sbjct: 58  FIFISGFVLSFIYKGQFSKKRFYAKRVKSILPQYIIFSVFYTLLNIGLSTINGKANSPSI 117

Query: 196 IWYSLNLL-----YHLWFTLFLGIFQFVYLYLIR 110
           +   +NLL     YHLW+   +G F   Y Y+I+
Sbjct: 118 LTMIINLLTTSSSYHLWYFAVIGQFYISYPYIIK 151


>tr|Q9B8Y5|Q9B8Y5_FASHE NADH dehydrogenase subunit 2 OS=Fasciola
           hepatica GN=nad2 PE=4 SV=1
          Length = 288

 Score = 26.2 bits (56), Expect(2) = 5.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 368 CCITYGLLYCSIWFSTFWYC*TWVHI 291
           CC+++ +L    WF T+ +   W H+
Sbjct: 143 CCLSFLVLSVLFWFYTYGWLYCWCHM 168



 Score = 26.2 bits (56), Expect(2) = 5.7
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -3

Query: 304 LGCTSVHYYSTKFGTFWYCVELGCTPVHYYSTKFGTIWYSLNL---LYHLWFTLFL 146
           LGC S  ++ + +G F++C  L   PV        +I+Y L +   ++  WF + +
Sbjct: 206 LGCCSGSWFGSVWGYFFFCFLLLSIPVSL------SIFYKLVMASGIFSCWFVVLV 255


>tr|A8XRV8|A8XRV8_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG17836 PE=4 SV=2
          Length = 221

 Score = 33.5 bits (75), Expect = 6.9
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = -3

Query: 331 GSLLSGIVELGCTSV---HYYSTKFGTFWYCVELGCTPVHYYSTKFGTIWYSLNLLYHLW 161
           G +   +V   C++    H Y  KF  FW        PV + ++ F  IW      Y L 
Sbjct: 99  GPITEELVFRACSTTLMYHVYGYKFTLFW-------NPVPFAASHFHHIWDDQRKGYSLA 151

Query: 160 FTLFLGIFQFVYLYL 116
            ++    FQFVY Y+
Sbjct: 152 HSILQRGFQFVYTYI 166


>tr|B5ENJ9|B5ENJ9_ACIF5 Heme/copper-type cytochrome/quinol oxidase
           subunit 3-like protein OS=Acidithiobacillus ferrooxidans
           (strain ATCC 53993) GN=Lferr_0783 PE=4 SV=1
          Length = 211

 Score = 33.1 bits (74), Expect = 9.0
 Identities = 20/75 (26%), Positives = 36/75 (48%)
 Frame = -3

Query: 343 IALSGSLLSGIVELGCTSVHYYSTKFGTFWYCVELGCTPVHYYSTKFGTIWYSLNLLYHL 164
           +A SG + + I+    T VH     FG  W  V +       ++T+      +L + +HL
Sbjct: 136 VATSGGISAFII---LTQVHAAHVFFGLIWILVMMAQVLTKGFTTEVVGRLLTLRMFWHL 192

Query: 163 WFTLFLGIFQFVYLY 119
              +++ +F FVYL+
Sbjct: 193 QAIIWVFVFVFVYLW 207


>tr|B7J5T0|B7J5T0_THIFE Cytochrome o ubiquinol oxidase, subunit III
           OS=Acidithiobacillus ferrooxidans ATCC 23270 GN=cyoC
           PE=4 SV=1
          Length = 211

 Score = 33.1 bits (74), Expect = 9.0
 Identities = 20/75 (26%), Positives = 36/75 (48%)
 Frame = -3

Query: 343 IALSGSLLSGIVELGCTSVHYYSTKFGTFWYCVELGCTPVHYYSTKFGTIWYSLNLLYHL 164
           +A SG + + I+    T VH     FG  W  V +       ++T+      +L + +HL
Sbjct: 136 VATSGGISAFII---LTQVHAAHVFFGLIWILVMMAQVLTKGFTTEVVGRLLTLRMFWHL 192

Query: 163 WFTLFLGIFQFVYLY 119
              +++ +F FVYL+
Sbjct: 193 QAIIWVFVFVFVYLW 207