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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919362
Clone id YMU001_000124_C02
Library
Length 525
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000124_C02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTCAAGAGTGGTATGGAATTGATTACACTCTCTCTGTGCCCAGTCCGATTGTGTGAGAGA
AGAGACTGCCCATAGTTTTATAGTGGAAGTTATAGATGGAAGCCCCCAGGTTGTGACATC
TTCCCAAAAATGACGGAGTCACGAAGCACATGTGTGTACAATAGAGATACAGGTTTTAAA
ACAAAATTACTTCTTAAGAGTTGAGATATCGGCCTCTACAAGTTCCTCTACTTGTTAGAA
GAATGAACATAATTGGGTTTACAATCTGCTGACACAGCCCAATCACACATCAGTTGAGAG
GATACCTTTACTTGTGGTTGTTACTAGACCCACTTTTCAAGTCAGAAAGAGGTCTACTTG
TTATAGCAGCAAGATTCTTCATTGCAGCTGCCTATCTTAGGTGCTATAATCTAGTACCCT
CTTGACAACTGCAATTCCACTATTGGCTCACTCGCAGCAGTAAAAGAGATCATGATCAGA
AACCCTGCTATTTGCTGTTATCTCATGGAACTTGTTCGATGAAGG
■■Homology search results ■■ -
sp_hit_id A6H4Q8
Definition sp|A6H4Q8|ATP6_VANPO ATP synthase subunit a OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294)
Align length 35
Score (bit) 30.0
E-value 7.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919362|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_C02.
         (525 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6H4Q8|ATP6_VANPO ATP synthase subunit a OS=Vanderwaltozyma p...    30   7.0  

>sp|A6H4Q8|ATP6_VANPO ATP synthase subunit a OS=Vanderwaltozyma
           polyspora (strain ATCC 22028 / DSM 70294) GN=ATP6 PE=3
           SV=1
          Length = 254

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 242 NEHNWVYNLLTQPNHTSVERIPLLVVVTRPTFQVR 346
           N+H W++  L  PN T    +PLLV++   ++  R
Sbjct: 140 NKHGWLFFSLFVPNGTPTPLVPLLVIIESLSYIAR 174
tr_hit_id B8FJH2
Definition tr|B8FJH2|B8FJH2_9DELT Radical SAM domain protein OS=Desulfatibacillum alkenivorans AK-01
Align length 38
Score (bit) 34.3
E-value 3.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919362|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_C02.
         (525 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8FJH2|B8FJH2_9DELT Radical SAM domain protein OS=Desulfatiba...    34   3.9  

>tr|B8FJH2|B8FJH2_9DELT Radical SAM domain protein
           OS=Desulfatibacillum alkenivorans AK-01 GN=Dalk_3955
           PE=3 SV=1
          Length = 372

 Score = 34.3 bits (77), Expect = 3.9
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -3

Query: 166 LYCTHMCFVTPSFLGRCH---NLGASIYNFHYKTMGSL 62
           L C H C +TP + G+C    NLG  +Y+  Y    SL
Sbjct: 56  LTCPHTCLITPDYRGKCGTKVNLGGKLYSISYANPCSL 93