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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919368
Clone id YMU001_000124_C09
Library
Length 509
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000124_C09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTTTTTAGTGACTGAGTCAACTTGATATGGCATGCTATTGTATATCCTCTCATATACTTT
AGTAGACAACTTGTATTGTAAAATTTGACCTAGGGATCCTGCAATAGGCTCCATCGGGAA
ACATATGGCCCTAACAAGATGTGAGTAGATCATTACCGGAGATGTGTGATCCAATAGCCG
GTATGTATCAGCTTTTCCTTCAACTTGGCCATAAAAAAAGCCTTCAACAACCTTCCCACC
TCTAACAATTTTGTTATGCCACTTATCCTTTTGTGCTTTCACCGTTTGGTACAACACTTT
TGTGCATTTGATAATGTAGAAGTCTTCGTTTGCCTCAGCTGGTTTTACTGCAAAATTATC
CCCTATGGACAGCATGCCACTTAACATTTCAGGGCATCCTTCATATAGTGGCAGAGTTGG
ACACTTGGCTCATCGGAATCGATGTTGAATCTCCACCCTCCTCCTCGTCATCTGATTTGT
CATCCCTAATTGTATCCCCGGACTCTGGC
■■Homology search results ■■ -
sp_hit_id Q5FVH2
Definition sp|Q5FVH2|PLD3_RAT Phospholipase D3 OS=Rattus norvegicus
Align length 73
Score (bit) 33.9
E-value 0.43
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919368|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_C09.
         (495 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5FVH2|PLD3_RAT Phospholipase D3 OS=Rattus norvegicus GN=Pld3...    34   0.43 
sp|O35405|PLD3_MOUSE Phospholipase D3 OS=Mus musculus GN=Pld3 PE...    34   0.43 
sp|Q5R4Y7|PLD3_PONAB Phospholipase D3 OS=Pongo abelii GN=PLD3 PE...    33   0.95 
sp|Q4R583|PLD3_MACFA Phospholipase D3 OS=Macaca fascicularis GN=...    33   0.95 
sp|Q8IV08|PLD3_HUMAN Phospholipase D3 OS=Homo sapiens GN=PLD3 PE...    33   0.95 
sp|Q2KJJ8|PLD3_BOVIN Phospholipase D3 OS=Bos taurus GN=PLD3 PE=2...    33   0.95 
sp|P46214|SYI_PYRFU Isoleucyl-tRNA synthetase OS=Pyrococcus furi...    32   2.1  
sp|Q9FLC0|PER52_ARATH Peroxidase 52 OS=Arabidopsis thaliana GN=P...    32   2.1  
sp|Q9V072|SYI_PYRAB Isoleucyl-tRNA synthetase OS=Pyrococcus abys...    31   2.7  
sp|Q86S05|LIG_DROME Protein lingerer OS=Drosophila melanogaster ...    31   2.7  
sp|O58792|SYI_PYRHO Isoleucyl-tRNA synthetase OS=Pyrococcus hori...    31   3.5  
sp|Q640B3|PLD3_XENTR Phospholipase D3 OS=Xenopus tropicalis GN=p...    30   8.0  

>sp|Q5FVH2|PLD3_RAT Phospholipase D3 OS=Rattus norvegicus GN=Pld3
           PE=2 SV=1
          Length = 488

 Score = 33.9 bits (76), Expect = 0.43
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = -1

Query: 252 ISGITKLLEVGRLLKAFFMAKLKEKLIHTGYWITHLR**STHILLGPYVSRWSLL---QD 82
           ++ +  LL+ G  ++   M KL   ++HT +W+       TH  LG     W  L   ++
Sbjct: 172 LADLQSLLQSGAQVRMVDMQKLTHGVLHTKFWVVD----QTHFYLGSANMDWRSLTQVKE 227

Query: 81  P*VKFYNTSCLLK 43
             V  YN SCL +
Sbjct: 228 LGVVMYNCSCLAR 240


>sp|O35405|PLD3_MOUSE Phospholipase D3 OS=Mus musculus GN=Pld3 PE=2
           SV=1
          Length = 488

 Score = 33.9 bits (76), Expect = 0.43
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = -1

Query: 252 ISGITKLLEVGRLLKAFFMAKLKEKLIHTGYWITHLR**STHILLGPYVSRWSLL---QD 82
           ++ +  LL+ G  ++   M KL   ++HT +W+       TH  LG     W  L   ++
Sbjct: 172 LADLQSLLQSGAQVRMVDMQKLTHGVLHTKFWVVD----QTHFYLGSANMDWRSLTQVKE 227

Query: 81  P*VKFYNTSCLLK 43
             V  YN SCL +
Sbjct: 228 LGVVMYNCSCLAR 240


>sp|Q5R4Y7|PLD3_PONAB Phospholipase D3 OS=Pongo abelii GN=PLD3 PE=2
           SV=1
          Length = 490

 Score = 32.7 bits (73), Expect = 0.95
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = -1

Query: 234 LLEVGRLLKAFFMAKLKEKLIHTGYWITHLR**STHILLGPYVSRWSLL---QDP*VKFY 64
           LL+ G  ++   M KL   ++HT +W+       TH  LG     W  L   ++  V  Y
Sbjct: 180 LLQSGAQVRMVDMQKLTHGVLHTKFWVVD----QTHFYLGSANMDWRSLTQVKELGVVMY 235

Query: 63  NTSCLLK 43
           N SCL +
Sbjct: 236 NCSCLAR 242


>sp|Q4R583|PLD3_MACFA Phospholipase D3 OS=Macaca fascicularis
           GN=PLD3 PE=2 SV=1
          Length = 490

 Score = 32.7 bits (73), Expect = 0.95
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = -1

Query: 234 LLEVGRLLKAFFMAKLKEKLIHTGYWITHLR**STHILLGPYVSRWSLL---QDP*VKFY 64
           LL+ G  ++   M KL   ++HT +W+       TH  LG     W  L   ++  V  Y
Sbjct: 180 LLQSGAQVRMVDMQKLTHGVLHTKFWVVD----QTHFYLGSANMDWRSLTQVKELGVVMY 235

Query: 63  NTSCLLK 43
           N SCL +
Sbjct: 236 NCSCLAR 242


>sp|Q8IV08|PLD3_HUMAN Phospholipase D3 OS=Homo sapiens GN=PLD3 PE=1
           SV=1
          Length = 490

 Score = 32.7 bits (73), Expect = 0.95
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = -1

Query: 234 LLEVGRLLKAFFMAKLKEKLIHTGYWITHLR**STHILLGPYVSRWSLL---QDP*VKFY 64
           LL+ G  ++   M KL   ++HT +W+       TH  LG     W  L   ++  V  Y
Sbjct: 180 LLQSGAQVRMVDMQKLTHGVLHTKFWVVD----QTHFYLGSANMDWRSLTQVKELGVVMY 235

Query: 63  NTSCLLK 43
           N SCL +
Sbjct: 236 NCSCLAR 242


>sp|Q2KJJ8|PLD3_BOVIN Phospholipase D3 OS=Bos taurus GN=PLD3 PE=2
           SV=1
          Length = 490

 Score = 32.7 bits (73), Expect = 0.95
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = -1

Query: 234 LLEVGRLLKAFFMAKLKEKLIHTGYWITHLR**STHILLGPYVSRWSLL---QDP*VKFY 64
           LL+ G  ++   M KL   ++HT +W+       TH  LG     W  L   ++  V  Y
Sbjct: 180 LLQSGAQVRMVDMQKLTHGVLHTKFWVVD----QTHFYLGSANMDWRSLTQVKELGVVMY 235

Query: 63  NTSCLLK 43
           N SCL +
Sbjct: 236 NCSCLAR 242


>sp|P46214|SYI_PYRFU Isoleucyl-tRNA synthetase OS=Pyrococcus
           furiosus GN=ileS PE=3 SV=2
          Length = 1066

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -3

Query: 361 MLSIGDNFAVKPAEANEDFYIIKCTKVLYQTVKAQKDKWHNKIVRGGKVVEG 206
           +LS  +N   +     E FY+ K T+ LY  V     +W+ +++R    VEG
Sbjct: 714 ILSRVNNLIKEVENGIETFYLTKATRALYNFVVEDLSRWYVRLIRKRLWVEG 765


>sp|Q9FLC0|PER52_ARATH Peroxidase 52 OS=Arabidopsis thaliana
           GN=PER52 PE=2 SV=1
          Length = 324

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 21/72 (29%), Positives = 31/72 (43%)
 Frame = -3

Query: 361 MLSIGDNFAVKPAEANEDFYIIKCTKVLYQTVKAQKDKWHNKIVRGGKVVEGFFYGQVEG 182
           +L  GDN  V  A+   +FY   C  +L     A K   +++   G  ++  FF+     
Sbjct: 16  LLLQGDNNYVVEAQLTTNFYSTSCPNLLSTVQTAVKSAVNSEARMGASILRLFFHDCFVN 75

Query: 181 KADTYRLLDHTS 146
             D   LLD TS
Sbjct: 76  GCDGSILLDDTS 87


>sp|Q9V072|SYI_PYRAB Isoleucyl-tRNA synthetase OS=Pyrococcus abyssi
           GN=ileS PE=3 SV=1
          Length = 1067

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 313 EDFYIIKCTKVLYQTVKAQKDKWHNKIVRGGKVVEG 206
           E FY+ K T+ LY  V     +W+ +++R    VEG
Sbjct: 730 ESFYLTKATRALYNFVVEDLSRWYVRLIRKRLWVEG 765


>sp|Q86S05|LIG_DROME Protein lingerer OS=Drosophila melanogaster
            GN=lig PE=1 SV=1
          Length = 1375

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = -3

Query: 235  IVRGGKVVEGFFYGQVEGKADTYRLLDHTSPVMIYSHLVRAICFPMEP 92
            +V GG       +G V G   TY  +  T PV   + LV A C   EP
Sbjct: 1310 VVGGGTESHVLIHGNVNGPQVTYHRIWQTEPVQCQNQLVAAHCNNFEP 1357
tr_hit_id Q6Z5A1
Definition tr|Q6Z5A1|Q6Z5A1_ORYSJ Os07g0542600 protein OS=Oryza sativa subsp. japonica
Align length 78
Score (bit) 38.1
E-value 0.23
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919368|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_C09.
         (495 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6Z5A1|Q6Z5A1_ORYSJ Os07g0542600 protein OS=Oryza sativa subs...    38   0.23 
tr|A7SV05|A7SV05_NEMVE Predicted protein OS=Nematostella vectens...    38   0.23 
tr|A7SPN6|A7SPN6_NEMVE Predicted protein OS=Nematostella vectens...    38   0.23 
tr|A7RMS7|A7RMS7_NEMVE Predicted protein OS=Nematostella vectens...    38   0.23 
tr|B2WGT8|B2WGT8_PYRTR Putative uncharacterized protein OS=Pyren...    33   5.6  
tr|Q8IBT0|Q8IBT0_PLAF7 Putative uncharacterized protein MAL7P1.8...    33   9.5  
tr|B4DEL6|B4DEL6_HUMAN cDNA FLJ59669, highly similar to Homo sap...    33   9.8  

>tr|Q6Z5A1|Q6Z5A1_ORYSJ Os07g0542600 protein OS=Oryza sativa subsp.
           japonica GN=OJ1729_E01.9 PE=4 SV=1
          Length = 609

 Score = 38.1 bits (87), Expect = 0.23
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
 Frame = -3

Query: 397 PLYEGCPEM-----LSGMLSIGDNFAVKPAEANEDFYIIKCTKVLYQTVKAQKDKWH--N 239
           P Y G P +        +     N+A  PA+ NEDF  +K T +   +++   D +H  N
Sbjct: 247 PFYTGNPMVRLPVKADELTQFSQNYANLPADTNEDFESVKSTLLSLASLQVATDNFHESN 306

Query: 238 KIVRG--GKVVEGFFYGQ 191
           KI  G  G V +G  +GQ
Sbjct: 307 KIGEGGFGAVYKGILHGQ 324


>tr|A7SV05|A7SV05_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g247570 PE=4 SV=1
          Length = 293

 Score = 38.1 bits (87), Expect = 0.23
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
 Frame = -3

Query: 370 LSGMLSIGDNFAVKPAEANE--DFYIIKCTKVLYQTVKAQ-KDKWHNKIVRGGKVVEGFF 200
           ++ + + G   A++ AE +   DFY++K T    + ++    D +HN  +RG  V++G F
Sbjct: 177 MADLAACGSTVAIE-AEGDRMYDFYLLKVTSAGVEELEHDYTDDYHNTALRGESVLKGHF 235

Query: 199 YGQVEGKADTYRLLDHTSPVMIYSHLVRAICFPMEPIAGSLGQILQYKLSTKVYERI 29
           Y + +   D    L+     ++Y+  VR IC  +       G+ L YKL  K  E I
Sbjct: 236 YLR-DNIHDMTFTLNEKRIAVVYAATVRHICGDLP--TKKRGKKLIYKLPLKENEAI 289


>tr|A7SPN6|A7SPN6_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g215499 PE=4 SV=1
          Length = 644

 Score = 38.1 bits (87), Expect = 0.23
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
 Frame = -3

Query: 370 LSGMLSIGDNFAVKPAEANE--DFYIIKCTKVLYQTVKAQ-KDKWHNKIVRGGKVVEGFF 200
           ++ + + G   A++ AE +   DFY++K T    + ++    D +HN  +RG  V++G F
Sbjct: 528 MADLAACGSTVAIE-AEGDRMYDFYLLKVTSAGVEELEHDYTDDYHNTALRGESVLKGHF 586

Query: 199 YGQVEGKADTYRLLDHTSPVMIYSHLVRAICFPMEPIAGSLGQILQYKLSTKVYERI 29
           Y + +   D    L+     ++Y+  VR IC  +       G+ L YKL  K  E I
Sbjct: 587 YLR-DNIHDMTFTLNEKRIAVVYAATVRHICGDLP--TKKRGKKLIYKLPLKENEAI 640


>tr|A7RMS7|A7RMS7_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g239440 PE=4 SV=1
          Length = 665

 Score = 38.1 bits (87), Expect = 0.23
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
 Frame = -3

Query: 370 LSGMLSIGDNFAVKPAEANE--DFYIIKCTKVLYQTVKAQ-KDKWHNKIVRGGKVVEGFF 200
           ++ + + G   A++ AE +   DFY++K T    + ++    D +HN  +RG  V++G F
Sbjct: 549 MADLAACGSTVAIE-AEGDRMYDFYLLKVTSAGVEELEHDYTDDYHNTALRGESVLKGHF 607

Query: 199 YGQVEGKADTYRLLDHTSPVMIYSHLVRAICFPMEPIAGSLGQILQYKLSTKVYERI 29
           Y + +   D    L+     ++Y+  VR IC  +       G+ L YKL  K  E I
Sbjct: 608 YLR-DNIHDMTFTLNEKRIAVVYAATVRHICGDLP--TKKRGKKLIYKLPLKENEAI 661


>tr|B2WGT8|B2WGT8_PYRTR Putative uncharacterized protein
           OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP)
           GN=PTRG_09144 PE=4 SV=1
          Length = 540

 Score = 33.5 bits (75), Expect = 5.6
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 147 DV*SNSRYVSAFPSTWP*KKPSTTFPPLTILLCHLSFCAFTVWYNTFVH 293
           +V +  R VS F   W   + +   PP+T  +C +  CAFT W++   +
Sbjct: 274 EVDARHRAVSLFARLW---RTAGNLPPVTRQVCKVQSCAFTAWFSVLYY 319


>tr|Q8IBT0|Q8IBT0_PLAF7 Putative uncharacterized protein MAL7P1.82
           OS=Plasmodium falciparum (isolate 3D7) GN=MAL7P1.82 PE=4
           SV=1
          Length = 317

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 209 FNNLPTSNNFVMPLILLCFHRLVQHFCAFDNVEVFVCLSWFYC 337
           F N+ +S NF   +I L F      FC F  +  F C+SW+ C
Sbjct: 39  FFNIKSSFNFSSNIIFLIF------FCGFAFILFFFCMSWYSC 75


>tr|B4DEL6|B4DEL6_HUMAN cDNA FLJ59669, highly similar to Homo
           sapiens phospholipase D family, member 3 (PLD3),
           transcript variant 1, mRNA OS=Homo sapiens PE=2 SV=1
          Length = 402

 Score = 32.7 bits (73), Expect = 9.8
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = -1

Query: 234 LLEVGRLLKAFFMAKLKEKLIHTGYWITHLR**STHILLGPYVSRWSLL---QDP*VKFY 64
           LL+ G  ++   M KL   ++HT +W+       TH  LG     W  L   ++  V  Y
Sbjct: 161 LLQSGAQVRMVDMQKLTHGVLHTKFWVVD----QTHFYLGSANMDWRSLTQVKELGVVMY 216

Query: 63  NTSCLLK 43
           N SCL +
Sbjct: 217 NCSCLAR 223