BP919371
Clone id YMU001_000124_D03
Library
Length 575
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000124_D03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CCTGAACACAAAAAATGATCCACTCGAAGCGTCTGCACATGTCCTGCCAAACACAATTGC
CACCAGTTGCAAGAATATAATGACAAAAGGGGTAGGTACTTACAGACTTCAGAGACACCC
ACTTCCCCTCTACGCCACAAAATCCAAAATATAGCAGGCAACTCAGCCTGCAAAGCAGAA
TCATGCAGCTGCATGGCAACCGGCGCACATTGGCTTTTCTCATCTGGTCAAGTGCTTCCA
ATCTCGACCACTAGTTTTGCCCCCCAAAAAGTAGCCTCTAAATTCATTGCGGCCAGGGTC
TGTGCACATCTGCACATCATGAGAGTGGCTGCCGCTTTCCAAGTAATGACCTTTCACAGC
AATCACTGAAACTCCACTTCCACAAGATGACTGCCCATTCGTAGCTTGGCCTAGTGATGT
CCCAATTATAGCTTGGCTAATGACAGGCCGAACAAAGCCCAGTGCCTTCGATCTAGATTC
TCTTTCCAACCAATTCCCACTTGACACATTCATGTTATGCTTCCTTGAAGCTGTTAAAAC
CATTCTTGACTCTCTGTCTTGCATTTTGGATCCTG
■■Homology search results ■■ -
sp_hit_id P47460
Definition sp|P47460|HMW2_MYCGE Cytadherence high molecular weight protein 2 OS=Mycoplasma genitalium
Align length 45
Score (bit) 33.5
E-value 0.78
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919371|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_D03.
(575 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P47460|HMW2_MYCGE Cytadherence high molecular weight protein ... 33 0.78
sp|P18564|ITB6_HUMAN Integrin beta-6 OS=Homo sapiens GN=ITGB6 PE... 30 6.6
sp|Q5JUK3|KCNT1_HUMAN Potassium channel subfamily T member 1 OS=... 30 8.6

>sp|P47460|HMW2_MYCGE Cytadherence high molecular weight protein 2
OS=Mycoplasma genitalium GN=hmw2 PE=3 SV=1
Length = 1805

Score = 33.5 bits (75), Expect = 0.78
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +1

Query: 46 AKHNCHQLQEYNDKRGRYLQTSETPTSPLRHKIQNIAGNSACKAE 180
AKH HQ E+ K+ L ET L+HKI SA K+E
Sbjct: 360 AKHLEHQQNEFEQKQSDSLLKLETEYKALQHKINEFKNESATKSE 404


>sp|P18564|ITB6_HUMAN Integrin beta-6 OS=Homo sapiens GN=ITGB6 PE=1
SV=2
Length = 788

Score = 30.4 bits (67), Expect = 6.6
Identities = 22/64 (34%), Positives = 26/64 (40%)
Frame = +1

Query: 1 PEHKK*STRSVCTCPAKHNCHQLQEYNDKRGRYLQTSETPTSPLRHKIQNIAGNSACKAE 180
P+H S R C C + CH L Y + G Y Q S +RHK GN C
Sbjct: 506 PDHPSCSGRGDCYC-GQCICH-LSPYGNIYGPYCQCDNF--SCVRHKGLLCGGNGDCDCG 561

Query: 181 SCSC 192
C C
Sbjct: 562 ECVC 565


>sp|Q5JUK3|KCNT1_HUMAN Potassium channel subfamily T member 1
OS=Homo sapiens GN=KCNT1 PE=2 SV=2
Length = 1230

Score = 30.0 bits (66), Expect = 8.6
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = -2

Query: 184 MILLCRLSCLLYFGFCGV---EGKWVSLKSVSTYPFCHYILATGG 59
+IL C L CL++ G CG+ E +L ++++ FC +T G
Sbjct: 253 LILFCTLLCLVFTGTCGIQHLERAGENLSLLTSFYFCIVTFSTVG 297


tr_hit_id B1JWT8
Definition tr|B1JWT8|B1JWT8_BURCC Cobalamin-5-phosphate synthase CobS OS=Burkholderia cenocepacia (strain MC0-3)
Align length 78
Score (bit) 34.3
E-value 5.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919371|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_D03.
(575 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B1JWT8|B1JWT8_BURCC Cobalamin-5-phosphate synthase CobS OS=Bu... 34 5.0
tr|A7JXL1|A7JXL1_9VIBR 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-... 34 6.5
tr|B4M3B9|B4M3B9_DROVI GJ18987 OS=Drosophila virilis GN=GJ18987 ... 34 6.5
tr|A5Z1X7|A5Z1X7_CAMBA Integrin beta OS=Camelus bactrianus PE=2 ... 33 8.6

>tr|B1JWT8|B1JWT8_BURCC Cobalamin-5-phosphate synthase CobS
OS=Burkholderia cenocepacia (strain MC0-3)
GN=Bcenmc03_2457 PE=4 SV=1
Length = 258

Score = 34.3 bits (77), Expect = 5.0
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = -1

Query: 347 ITWKAAATLMMCRCAQTLAAMNLEATFWGAKLVVEIGST*PDEKSQCAPVAMQLHDSALQ 168
+ W+A A ++ R A T+ A + + L++ + P+ K++ PVA Q+ A
Sbjct: 132 LKWQALAAMLPLRAAWTMIAAHAASRAMAVSLLMSLDYVRPEGKAK--PVAQQMGARAAC 189

Query: 167 AE----LPAIFWILWRRG 126
LP +FW WR G
Sbjct: 190 VAAGFGLPWLFWPDWRMG 207


>tr|A7JXL1|A7JXL1_9VIBR 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,
4-benzoquinol methylase OS=Vibrio sp. Ex25
GN=VEx25_A1386 PE=4 SV=1
Length = 214

Score = 33.9 bits (76), Expect = 6.5
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Frame = +3

Query: 237 SNLDH*FCP------PKSSL*IHCGQGLCTSAHHESGCRFPSNDLSQQSLKLHFHKMTAH 398
SN DH PKS I CG+G+ H+ G R +D SQQ ++L AH
Sbjct: 33 SNFDHHLSQLVDMVTPKSIHEIGCGEGVWALKWHQQGIRVKGSDFSQQVIQLARDNAQAH 92

Query: 399 S 401
+
Sbjct: 93 N 93


>tr|B4M3B9|B4M3B9_DROVI GJ18987 OS=Drosophila virilis GN=GJ18987
PE=4 SV=1
Length = 341

Score = 33.9 bits (76), Expect = 6.5
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Frame = +1

Query: 106 TSETPTSPLRHKIQNIAGNSACKAESCSCMATGAHWLFSSGQVLPISTTSFAPQKVAS-K 282
T E PT+ +A C + CS +++G +W+ G +L I T S P +AS +
Sbjct: 68 TIEAPTTAAT-TTATVACQRLCSLQPCSLISSGNYWVL--GALLIILTASCLPSSIASPR 124

Query: 283 FIAAR--VCAHLHIMRVAAAFQVMTFHSN 363
+A R + H H + + +A Q SN
Sbjct: 125 RVAGRHLILPHRHHVHLRSAGQEHRLPSN 153


>tr|A5Z1X7|A5Z1X7_CAMBA Integrin beta OS=Camelus bactrianus PE=2
SV=1
Length = 788

Score = 33.5 bits (75), Expect = 8.6
Identities = 26/72 (36%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = +1

Query: 1 PEHKK*STRSVCTCPAKHNCHQLQEYNDKRGRYLQTSETPTSPLRHKIQNIAGNSACKAE 180
PEH S R C C + CH L Y + G Y Q S +RHK GN C
Sbjct: 506 PEHPSCSGRGDCYC-GQCICH-LSPYGNIYGPYCQCDNF--SCVRHKGLLCGGNGDCDCG 561

Query: 181 SCSCMA--TGAH 210
C C + TG H
Sbjct: 562 ECVCRSGWTGEH 573