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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919376
Clone id YMU001_000124_D09
Library
Length 416
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000124_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTTTTTTTTTTTTTTTTGCCTACAAACCCATGCTTCCTTCTTAATTCAAATA
GACTTTCAATGAGACTCTTAAAGTGGCACATTAACGGACTTTCAACGGTTGTCCTTGAGA
GTCACCATGGACTTCAAGATACTCGGCCCAATCTTGTCGGCCAGTGCACCCTTTTCTGAC
AGAGACAATGTCTTCTCCTTCACTTTACTTTGGAGCTTGTTCACAGTTATGTCCAGTTGT
TTTTGCTCTGCTTCAAGCTTCAAGTGAGCCCCATGAAATGGCAGGCTCACAAAAAAATCG
CCACCAGCACCTAAAAACTATAAAGGCTCTGATCCATCATAATCACCACAAGTTATACAT
TCTGCTGCAGGATCTTCTTTTACAGACTCAGTTGTCCCATTGTCGAGCATTGGAAC
■■Homology search results ■■ -
sp_hit_id Q2JH03
Definition sp|Q2JH03|G6PI_FRASC Glucose-6-phosphate isomerase OS=Frankia sp. (strain CcI3)
Align length 65
Score (bit) 33.9
E-value 0.26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919376|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_D09.
         (391 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2JH03|G6PI_FRASC Glucose-6-phosphate isomerase OS=Frankia sp...    34   0.26 
sp|Q8D4Q1|SSTT_VIBVU Serine/threonine transporter sstT OS=Vibrio...    31   1.7  
sp|Q65CZ5|HTPG_BACLD Chaperone protein htpG OS=Bacillus lichenif...    30   4.9  
sp|Q6NG98|COX2_CORDI Cytochrome c oxidase subunit 2 OS=Corynebac...    30   4.9  
sp|Q1GDP8|ILVD_SILST Dihydroxy-acid dehydratase OS=Silicibacter ...    29   6.4  
sp|Q7BLV3|HAS_PASMU Hyaluronan synthase OS=Pasteurella multocida...    29   6.4  
sp|Q87QP1|SYS_VIBPA Seryl-tRNA synthetase OS=Vibrio parahaemolyt...    29   8.4  
sp|A7MSW8|SYS_VIBHB Seryl-tRNA synthetase OS=Vibrio harveyi (str...    29   8.4  
sp|Q8KRG6|METE_VIBHA 5-methyltetrahydropteroyltriglutamate--homo...    29   8.4  
sp|P75471|HMW2_MYCPN Cytadherence high molecular weight protein ...    29   8.4  
sp|P29878|COX2_SCHGR Cytochrome c oxidase subunit 2 OS=Schistoce...    29   8.4  
sp|Q9UPS8|ANR26_HUMAN Ankyrin repeat domain-containing protein 2...    29   8.4  
sp|Q867T7|NCFA_DICDI NADPH oxidase activator OS=Dictyostelium di...    29   8.4  

>sp|Q2JH03|G6PI_FRASC Glucose-6-phosphate isomerase OS=Frankia sp.
           (strain CcI3) GN=pgi PE=3 SV=1
          Length = 556

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = -1

Query: 274 DFFVSLPFHGAHLKLEAEQKQLDITVNKLQSKVKEKTLSLSEKGALADKIGPSILKSMVT 95
           D F + P  G     EA+   LD + N+L ++  E   +L+ +  LAD+I        + 
Sbjct: 38  DLFAADPRRGETFAAEADGLYLDYSKNRLTARTVELLTALARRAGLADRIEAMFRGERIN 97

Query: 94  LKDNR 80
           + +NR
Sbjct: 98  VTENR 102


>sp|Q8D4Q1|SSTT_VIBVU Serine/threonine transporter sstT OS=Vibrio
           vulnificus GN=sstT PE=3 SV=1
          Length = 406

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +1

Query: 175 SLYFGACSQLCPVVFALLQASSEPHEMAGSQKNRHQHLKTIKAL 306
           SL+ GA   + P++  +L A+S    +A  +KN+H H++ I A+
Sbjct: 45  SLFVGALKAIAPILVFILVAAS----IANQKKNQHTHMRPIIAM 84


>sp|Q65CZ5|HTPG_BACLD Chaperone protein htpG OS=Bacillus
           licheniformis (strain DSM 13 / ATCC 14580) GN=htpG PE=3
           SV=1
          Length = 626

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 221 AKTTGHNCEQAPK*SEGEDIVSVRKGCTGRQDWAEYLEVH 102
           A   G+  E A K S G D++   K  T  +++ EYL+VH
Sbjct: 150 AGADGYTIEPAAKESAGTDVILKLKENTDDENYDEYLDVH 189


>sp|Q6NG98|COX2_CORDI Cytochrome c oxidase subunit 2
           OS=Corynebacterium diphtheriae GN=ctaC PE=3 SV=1
          Length = 362

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -3

Query: 335 MYNLW*L*WIRAFIVFRCWWRFFCEPAISWGSLEA*SRAKTTG 207
           MYN W   W+ A+I+    W  F     SW +     RAK  G
Sbjct: 57  MYNFWVWVWVTAWIIGFIMWGLFIYGMFSWSA----KRAKKAG 95


>sp|Q1GDP8|ILVD_SILST Dihydroxy-acid dehydratase OS=Silicibacter sp.
           (strain TM1040) GN=ilvD PE=3 SV=1
          Length = 614

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = -1

Query: 379 DNGTTESVKEDPAAECITCGDYDGSEPL*FLGAGGDFF-VSLPFHGAHLKLEAEQKQLDI 203
           D  T E V+      C TCG   G      +    +   ++LP +G+ L   +++KQL +
Sbjct: 175 DKLTDEEVQHIEENACPTCGSCSGMFTANSMNCLAEALGLALPGNGSTLATHSDRKQLFL 234

Query: 202 TVNKLQSKVKEKTLSLSEKGALADKI 125
              +   ++ ++    +EKG L  +I
Sbjct: 235 EAGRKIVEITKRHYEQNEKGLLPREI 260


>sp|Q7BLV3|HAS_PASMU Hyaluronan synthase OS=Pasteurella multocida
           GN=hyaD PE=1 SV=2
          Length = 972

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
 Frame = -1

Query: 250 HGAHLKLEAEQK------QLDITVNKLQSKVKEKTLSLSEKGALADK 128
           + AHL +  E+K       LDI    L S VK+  LS SEK  L +K
Sbjct: 53  NSAHLSVNKEEKVNVCDSPLDIATQLLLSNVKKLVLSDSEKNTLKNK 99


>sp|Q87QP1|SYS_VIBPA Seryl-tRNA synthetase OS=Vibrio
           parahaemolyticus GN=serS PE=3 SV=1
          Length = 435

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 235 KLEAEQKQLDITVNKLQSKVKEKTLSLSEKGALADKIGPSILKSMV 98
           KLE ++K + + V  LQS     +  + +K A  DK G   +K  +
Sbjct: 32  KLEEQRKSIQVEVENLQSTRNSISKQIGQKMAAGDKEGAEEIKKQI 77


>sp|A7MSW8|SYS_VIBHB Seryl-tRNA synthetase OS=Vibrio harveyi (strain
           ATCC BAA-1116 / BB120) GN=serS PE=3 SV=1
          Length = 435

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 235 KLEAEQKQLDITVNKLQSKVKEKTLSLSEKGALADKIGPSILKSMV 98
           KLE ++K + + V  LQS     +  + +K A  DK G   +K  +
Sbjct: 32  KLEEQRKSIQVEVENLQSTRNSISKQIGQKMAAGDKEGAEEIKKQI 77


>sp|Q8KRG6|METE_VIBHA
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase OS=Vibrio harveyi GN=metE PE=3 SV=1
          Length = 760

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 274 DFFVSLPFHGAHLKLEAEQKQLDITVNKL 188
           D  V LP  G H+ L A  +QLD  V KL
Sbjct: 253 DKIVELPVDGLHIDLSASPEQLDEVVEKL 281


>sp|P75471|HMW2_MYCPN Cytadherence high molecular weight protein 2
           OS=Mycoplasma pneumoniae GN=hmw2 PE=3 SV=1
          Length = 1818

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = -1

Query: 238 LKLEAEQKQLDITVN--KLQSKVKEKTLSLSEKGALADKIGPSILKSMVTLKDNR*KSVN 65
           LKLE E KQL   +   K++S+ K + L + E+  L  +     L +  +L+  + +  N
Sbjct: 384 LKLETEHKQLQKRIGEFKIESEAKSEALLIQERELLEKRREIDDLLTQASLEYEQQRRTN 443

Query: 64  VPL*ESH 44
             L E H
Sbjct: 444 QVLKEKH 450
tr_hit_id A9RW45
Definition tr|A9RW45|A9RW45_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 92
Score (bit) 97.4
E-value 3.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919376|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_D09.
         (391 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RW45|A9RW45_PHYPA Predicted protein OS=Physcomitrella paten...    97   3e-19
tr|Q7XAL9|Q7XAL9_ORYSJ Os07g0485600 protein OS=Oryza sativa subs...    89   1e-16
tr|B8B665|B8B665_ORYSI Putative uncharacterized protein OS=Oryza...    89   1e-16
tr|A3BJU5|A3BJU5_ORYSJ Putative uncharacterized protein OS=Oryza...    89   1e-16
tr|Q9LJR1|Q9LJR1_ARATH Genomic DNA, chromosome 3, TAC clone: K7L...    87   5e-16
tr|Q84WR6|Q84WR6_ARATH Putative uncharacterized protein At3g1535...    87   5e-16
tr|A5B5P8|A5B5P8_VITVI Putative uncharacterized protein OS=Vitis...    81   3e-14
tr|B4MA08|B4MA08_DROVI GJ15764 OS=Drosophila virilis GN=GJ15764 ...    46   0.001
tr|Q2V3V7|Q2V3V7_ARATH Uncharacterized protein At3g15351.2 OS=Ar...    43   0.007
tr|B5DKH0|B5DKH0_DROPS GA22871 OS=Drosophila pseudoobscura pseud...    37   0.64 
tr|B4H310|B4H310_DROPE GL13360 OS=Drosophila persimilis GN=GL133...    37   0.64 
tr|A4HAW2|A4HAW2_LEIBR Putative uncharacterized protein OS=Leish...    35   1.4  
tr|A1ZPF5|A1ZPF5_9SPHI Sensor protein OS=Microscilla marina ATCC...    34   3.2  
tr|B6LQY7|B6LQY7_BRAFL Putative uncharacterized protein OS=Branc...    33   5.4  
tr|B6LB80|B6LB80_BRAFL Putative uncharacterized protein OS=Branc...    33   5.4  
tr|B3JYS3|B3JYS3_9DELT Pyruvate flavodoxin/ferredoxin oxidoreduc...    33   7.1  
tr|Q1E2J2|Q1E2J2_COCIM Putative uncharacterized protein OS=Cocci...    33   7.1  
tr|B7FVM8|B7FVM8_PHATR Predicted protein OS=Phaeodactylum tricor...    33   9.3  
tr|Q26607|Q26607_SCHMA Surface protein (Fragment) OS=Schistosoma...    33   9.3  
tr|Q23DH8|Q23DH8_TETTH DNA-directed RNA polymerase, omega subuni...    33   9.3  

>tr|A9RW45|A9RW45_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_120338 PE=4 SV=1
          Length = 153

 Score = 97.4 bits (241), Expect = 3e-19
 Identities = 48/92 (52%), Positives = 59/92 (64%)
 Frame = -1

Query: 358 VKEDPAAECITCGDYDGSEPL*FLGAGGDFFVSLPFHGAHLKLEAEQKQLDITVNKLQSK 179
           V    A +C TCGDYDG+  + ++  G D F+  PFH  H +LE EQ  LD     LQ  
Sbjct: 62  VSRGDADKCRTCGDYDGTTHVWYMAPGSDVFLRRPFHSVHTQLEQEQVSLDQRAKTLQGV 121

Query: 178 VKEKTLSLSEKGALADKIGPSILKSMVTLKDN 83
           VKEKTL LS  GALAD+I P ++KS+VTLKDN
Sbjct: 122 VKEKTLQLSNVGALADRIAPGLVKSIVTLKDN 153


>tr|Q7XAL9|Q7XAL9_ORYSJ Os07g0485600 protein OS=Oryza sativa subsp.
           japonica GN=OJ1753_E03.119 PE=4 SV=1
          Length = 102

 Score = 88.6 bits (218), Expect = 1e-16
 Identities = 43/83 (51%), Positives = 56/83 (67%)
 Frame = -1

Query: 334 CITCGDYDGSEPL*FLGAGGDFFVSLPFHGAHLKLEAEQKQLDITVNKLQSKVKEKTLSL 155
           C TCGD+D  E    +  G D F  +PFH AH  L+ +Q++LD    KLQS VKEK+  +
Sbjct: 17  CPTCGDHDPKEDTWLMFPGSDIFARVPFHVAHTVLDKDQERLDYDTKKLQSFVKEKSFVI 76

Query: 154 SEKGALADKIGPSILKSMVTLKD 86
           SEKGALAD+I P I+KS+V+L D
Sbjct: 77  SEKGALADRISPGIVKSLVSLTD 99


>tr|B8B665|B8B665_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_26025 PE=4 SV=1
          Length = 166

 Score = 88.6 bits (218), Expect = 1e-16
 Identities = 43/83 (51%), Positives = 56/83 (67%)
 Frame = -1

Query: 334 CITCGDYDGSEPL*FLGAGGDFFVSLPFHGAHLKLEAEQKQLDITVNKLQSKVKEKTLSL 155
           C TCGD+D  E    +  G D F  +PFH AH  L+ +Q++LD    KLQS VKEK+  +
Sbjct: 81  CPTCGDHDPKEDTWLMFPGSDIFARVPFHVAHTVLDKDQERLDYDTKKLQSFVKEKSFVI 140

Query: 154 SEKGALADKIGPSILKSMVTLKD 86
           SEKGALAD+I P I+KS+V+L D
Sbjct: 141 SEKGALADRISPGIVKSLVSLTD 163


>tr|A3BJU5|A3BJU5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_023317 PE=4 SV=1
          Length = 162

 Score = 88.6 bits (218), Expect = 1e-16
 Identities = 43/83 (51%), Positives = 56/83 (67%)
 Frame = -1

Query: 334 CITCGDYDGSEPL*FLGAGGDFFVSLPFHGAHLKLEAEQKQLDITVNKLQSKVKEKTLSL 155
           C TCGD+D  E    +  G D F  +PFH AH  L+ +Q++LD    KLQS VKEK+  +
Sbjct: 77  CPTCGDHDPKEDTWLMFPGSDIFARVPFHVAHTVLDKDQERLDYDTKKLQSFVKEKSFVI 136

Query: 154 SEKGALADKIGPSILKSMVTLKD 86
           SEKGALAD+I P I+KS+V+L D
Sbjct: 137 SEKGALADRISPGIVKSLVSLTD 159


>tr|Q9LJR1|Q9LJR1_ARATH Genomic DNA, chromosome 3, TAC clone: K7L4
           (At3g15351) (Putative uncharacterized protein)
           OS=Arabidopsis thaliana GN=At3g15351 PE=2 SV=1
          Length = 165

 Score = 86.7 bits (213), Expect = 5e-16
 Identities = 39/83 (46%), Positives = 55/83 (66%)
 Frame = -1

Query: 334 CITCGDYDGSEPL*FLGAGGDFFVSLPFHGAHLKLEAEQKQLDITVNKLQSKVKEKTLSL 155
           C TCG +D SEP   +  G D F ++PFH  H  LE ++++++    KLQS VKEK L +
Sbjct: 81  CSTCGSHDSSEPTWMMLPGADLFAAIPFHAVHTMLEKDEEKMEFESKKLQSLVKEKALFI 140

Query: 154 SEKGALADKIGPSILKSMVTLKD 86
           SE GALAD I P +++S+V L+D
Sbjct: 141 SELGALADGISPGVIRSLVALED 163


>tr|Q84WR6|Q84WR6_ARATH Putative uncharacterized protein At3g15351
           OS=Arabidopsis thaliana GN=At3g15351 PE=2 SV=1
          Length = 165

 Score = 86.7 bits (213), Expect = 5e-16
 Identities = 39/83 (46%), Positives = 55/83 (66%)
 Frame = -1

Query: 334 CITCGDYDGSEPL*FLGAGGDFFVSLPFHGAHLKLEAEQKQLDITVNKLQSKVKEKTLSL 155
           C TCG +D SEP   +  G D F ++PFH  H  LE ++++++    KLQS VKEK L +
Sbjct: 81  CSTCGSHDSSEPTWMMLPGADLFAAIPFHAVHTMLEKDEEKMEFESKKLQSLVKEKALFI 140

Query: 154 SEKGALADKIGPSILKSMVTLKD 86
           SE GALAD I P +++S+V L+D
Sbjct: 141 SELGALADGISPGVIRSLVALED 163


>tr|A5B5P8|A5B5P8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_040543 PE=4 SV=1
          Length = 169

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 41/86 (47%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
 Frame = -1

Query: 334 CITCGDYDGSEPL*FLGAGGDFFVSLPFHGAHLKLE---AEQKQLDITVNKLQSKVKEKT 164
           C TCG++D  E    +  G D F  +PFH AH  LE    +Q++LD    KLQS +KEK+
Sbjct: 81  CATCGNHDSRENTWTMFPGTDVFARIPFHAAHSILEKGNVDQERLDYDAKKLQSYLKEKS 140

Query: 163 LSLSEKGALADKIGPSILKSMVTLKD 86
             +SEKG LADKI P +++S+VTL D
Sbjct: 141 FLISEKGVLADKISPGMIRSLVTLTD 166


>tr|B4MA08|B4MA08_DROVI GJ15764 OS=Drosophila virilis GN=GJ15764 PE=4
            SV=1
          Length = 1589

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = +1

Query: 118  SAQSCRPVHPFLTETMSSPSLYFGACSQLCPVVFALLQASSEPHEMAGSQKNRHQHLKTI 297
            +A S    H FL + ++ P   FG C+ L P  FA LQ   +  + +     + Q L T 
Sbjct: 1505 AASSVSSSHTFLPQALTMPKHTFGTCALLAPTSFANLQQQQQQQQTSKLAAEQQQQLPTS 1564

Query: 298  KALIHHNHH 324
             +  HH+HH
Sbjct: 1565 SSPQHHHHH 1573


>tr|Q2V3V7|Q2V3V7_ARATH Uncharacterized protein At3g15351.2
           OS=Arabidopsis thaliana GN=At3g15351 PE=4 SV=1
          Length = 132

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = -1

Query: 334 CITCGDYDGSEPL*FLGAGGDFFVSLPFHGAHLKLE 227
           C TCG +D SEP   +  G D F ++PFH  H  LE
Sbjct: 81  CSTCGSHDSSEPTWMMLPGADLFAAIPFHAVHTMLE 116


>tr|B5DKH0|B5DKH0_DROPS GA22871 OS=Drosophila pseudoobscura
            pseudoobscura GN=GA22871 PE=4 SV=1
          Length = 1488

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 16/77 (20%)
 Frame = +1

Query: 142  HPFLTETMSSPSLYFGACSQLCPVVFALLQASSEP----HEMAGSQ------------KN 273
            H FL ++++ P   FG C+ L P  FA LQ    P    H+ A +              +
Sbjct: 1409 HGFLPQSLTIPKHTFGTCALLAPTSFASLQQPPPPSVQHHQQAKTSVATSTSASCSPPVH 1468

Query: 274  RHQHLKTIKALIHHNHH 324
             H H        HHNHH
Sbjct: 1469 NHHHHSQQHQNPHHNHH 1485