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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919393
Clone id YMU001_000124_F03
Library
Length 435
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000124_F03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TCCATCTAGGTTGTGAATCTACTATCTTCTTTGATTGTTCCTCCTTTGTGATGTCGCCTT
CGTAAAGAGCGACATACTGCTCCTCCTCTATTCTCTTTTTCGTCTATTAGACACTTCAAA
CTTTCAGTCAAGAGGGAAAGGCAGGCTGGGTTGCATCCACTGCTCATGGAGCACTTTTGT
GTCTAGTCCCTGAAGTCTAATGGAGATTAGGAGTCTCCTCTCCCATTCCATTTCTGCCTT
GGCACTCTCCTCTGCTGACTTTTCTATTTGGTCATGGAGCCTTTGTTCTTCTTCTTCAGA
GATTCTTGAAGTCGAGGCCACCTCTTGAGCTGGGGCTGGATCTTCAATTGTGGTTGCCTC
TCCAGTTTCTGGTAGCTCTATGGCTGCTCCACCTGATTCCATCTTGGGTCTCTCTCTTGT
AGGCCTGCAGCTCCT
■■Homology search results ■■ -
sp_hit_id Q4V8F9
Definition sp|Q4V8F9|HSDL2_RAT Hydroxysteroid dehydrogenase-like protein 2 OS=Rattus norvegicus
Align length 29
Score (bit) 32.7
E-value 0.66
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919393|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_F03.
         (435 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4V8F9|HSDL2_RAT Hydroxysteroid dehydrogenase-like protein 2 ...    33   0.66 
sp|Q2TPA8|HSDL2_MOUSE Hydroxysteroid dehydrogenase-like protein ...    31   1.9  
sp|Q03073|FIXN_BRAJA Cytochrome c oxidase subunit 1 homolog, bac...    31   2.5  
sp|P53682|CDPK1_ORYSJ Calcium-dependent protein kinase isoform 1...    30   4.3  
sp|A4VTF1|RPOZ_STRSY DNA-directed RNA polymerase subunit omega O...    30   4.4  
sp|A4VZM9|RPOZ_STRS2 DNA-directed RNA polymerase subunit omega O...    30   4.4  
sp|P98056|FIXN_AZOC5 Cytochrome c oxidase subunit 1 homolog OS=A...    30   5.6  
sp|Q9BZV2|S19A3_HUMAN Thiamine transporter 2 OS=Homo sapiens GN=...    30   5.7  
sp|Q62377|U2AFM_MOUSE U2 small nuclear ribonucleoprotein auxilia...    29   7.5  
sp|A6UUK5|RRMJ_META3 Ribosomal RNA large subunit methyltransfera...    29   9.6  
sp|Q4R877|S19A3_MACFA Thiamine transporter 2 OS=Macaca fascicula...    29   9.8  
sp|Q18FQ4|G6PI_HALWD Probable glucose-6-phosphate isomerase OS=H...    29   9.8  

>sp|Q4V8F9|HSDL2_RAT Hydroxysteroid dehydrogenase-like protein 2
           OS=Rattus norvegicus GN=Hsdl2 PE=2 SV=1
          Length = 524

 Score = 32.7 bits (73), Expect = 0.66
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = -2

Query: 389 EQP*SYQKLERQPQLKIQPQLKRWPRLQE 303
           EQP   ++ ++QPQL+ QPQL+  P+LQE
Sbjct: 339 EQPQLQEQPQQQPQLQEQPQLQEKPQLQE 367



 Score = 31.2 bits (69), Expect = 1.9
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -2

Query: 389 EQP*SYQKLERQPQLKIQPQLKRWPRLQE 303
           EQP    +L+ QPQL+ +PQL+  P+ QE
Sbjct: 345 EQPQQQPQLQEQPQLQEKPQLQEQPQQQE 373



 Score = 30.8 bits (68), Expect = 2.5
 Identities = 17/40 (42%), Positives = 26/40 (65%)
 Frame = -2

Query: 422 LQERDPRWNQVEQP*SYQKLERQPQLKIQPQLKRWPRLQE 303
           LQE+ P+  +  Q     +L+ +PQL+ QPQL+  P+LQE
Sbjct: 307 LQEQ-PQLQEKPQLQEQPQLQEKPQLQEQPQLQEQPQLQE 345



 Score = 30.4 bits (67), Expect = 3.3
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = -2

Query: 368 KLERQPQLKIQPQLKRWPRLQE 303
           +L+ QPQL+ QPQL+  P+LQE
Sbjct: 300 QLQEQPQLQEQPQLQEKPQLQE 321



 Score = 30.0 bits (66), Expect = 4.3
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = -2

Query: 389 EQP*SYQKLERQPQLKIQPQLKRWPRLQE 303
           EQP    +L+ QPQL+ +PQL+  P+LQE
Sbjct: 303 EQP----QLQEQPQLQEKPQLQEQPQLQE 327


>sp|Q2TPA8|HSDL2_MOUSE Hydroxysteroid dehydrogenase-like protein 2
           OS=Mus musculus GN=Hsdl2 PE=2 SV=1
          Length = 490

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 13/22 (59%), Positives = 19/22 (86%)
 Frame = -2

Query: 368 KLERQPQLKIQPQLKRWPRLQE 303
           +L++QPQL+ QPQL+  P+LQE
Sbjct: 306 QLQKQPQLQEQPQLQEKPQLQE 327



 Score = 30.4 bits (67), Expect = 3.3
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -2

Query: 416 ERDPRWNQVEQP*SYQKLERQPQLKIQPQLKRWPRLQE 303
           ++ P+  +  Q     +L+ +PQL+ QPQL+  P+LQE
Sbjct: 308 QKQPQLQEQPQLQEKPQLQEKPQLQEQPQLQEKPQLQE 345


>sp|Q03073|FIXN_BRAJA Cytochrome c oxidase subunit 1 homolog,
           bacteroid OS=Bradyrhizobium japonicum GN=fixN PE=2 SV=1
          Length = 549

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 135 GKAGWVASTAHGALLCLVPEV*WRLGVSSPIPFLPWH 245
           G  GWV   + GAL CLVP    R G+ S +  + WH
Sbjct: 422 GALGWVGFVSFGALYCLVPWAWNRKGLYS-LKLVNWH 457


>sp|P53682|CDPK1_ORYSJ Calcium-dependent protein kinase isoform 1
           OS=Oryza sativa subsp. japonica GN=SPK PE=2 SV=2
          Length = 534

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -2

Query: 167 MSSGCNPACLSLLTESLKCLIDEKENRGGAVCRSLRRRHHKGG 39
           +S+GC  AC ++L  +L+C+ D ++ R     R ++  HH  G
Sbjct: 93  ISTGCQYACKTILKSNLRCVSDIEDVR-----REIQIMHHLSG 130


>sp|A4VTF1|RPOZ_STRSY DNA-directed RNA polymerase subunit omega
           OS=Streptococcus suis (strain 05ZYH33) GN=rpoZ PE=3 SV=1
          Length = 104

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = -1

Query: 426 RPTRERPKMESGGAAIELPETGEATTIEDPAPAQEVA-----STSRISEEEEQRLHDQI 265
           +PT+E   ++S   A+E  E+G      DP   +E          R++EEEE+++  QI
Sbjct: 36  KPTQEFTSVKSTLRALEEIESGNVVIHPDPEAKREAVRRRAEEAKRLAEEEERKIKAQI 94


>sp|A4VZM9|RPOZ_STRS2 DNA-directed RNA polymerase subunit omega
           OS=Streptococcus suis (strain 98HAH33) GN=rpoZ PE=3 SV=1
          Length = 104

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = -1

Query: 426 RPTRERPKMESGGAAIELPETGEATTIEDPAPAQEVA-----STSRISEEEEQRLHDQI 265
           +PT+E   ++S   A+E  E+G      DP   +E          R++EEEE+++  QI
Sbjct: 36  KPTQEFTSVKSTLRALEEIESGNVVIHPDPEAKREAVRRRAEEAKRLAEEEERKIKAQI 94


>sp|P98056|FIXN_AZOC5 Cytochrome c oxidase subunit 1 homolog
           OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM
           5975 / ORS 571) GN=fixN PE=3 SV=1
          Length = 551

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 135 GKAGWVASTAHGALLCLVPEV*WRLGVSSPIPFLPWH 245
           G  GWVA  + GA+ CL+P + W       +  + WH
Sbjct: 423 GALGWVAYISFGAIYCLIPWL-WNKREMYSMKAIEWH 458


>sp|Q9BZV2|S19A3_HUMAN Thiamine transporter 2 OS=Homo sapiens
           GN=SLC19A3 PE=1 SV=1
          Length = 496

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 426 RPTRERPKMESGGAAIELPETGEATTIEDPAPAQEVASTS 307
           +P+RE  K  S    +E    GEA   E+  P  E+ STS
Sbjct: 202 KPSREIKKSSSVNPVLEETHEGEAPGCEEQKPTSEILSTS 241


>sp|Q62377|U2AFM_MOUSE U2 small nuclear ribonucleoprotein auxiliary
           factor 35 kDa subunit-related protein 2 OS=Mus musculus
           GN=Zrsr2 PE=2 SV=1
          Length = 462

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -1

Query: 426 RPTRERPKMESGGAAIELPETGEATTIEDPAPAQEVASTSRISEEEEQRLHDQ 268
           R    R +     A +   E  +    EDP   ++     R+ EEE QRLH++
Sbjct: 26  RKKERRKRRRQALARLREAELAQKEEEEDPLAEEKRLEEERLLEEERQRLHEE 78


>sp|A6UUK5|RRMJ_META3 Ribosomal RNA large subunit methyltransferase
           J OS=Methanococcus aeolicus (strain Nankai-3 / ATCC
           BAA-1280) GN=rrmJ PE=3 SV=1
          Length = 269

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -3

Query: 97  KRIEEEQYVALYEGDITKEEQSKKIVDSQP 8
           K + EE  VA+ +GD+TK+E   KI+D  P
Sbjct: 83  KPLREENIVAI-QGDMTKKETINKIIDLMP 111
tr_hit_id A3XAE2
Definition tr|A3XAE2|A3XAE2_9RHOB LysM domain protein OS=Roseobacter sp. MED193
Align length 40
Score (bit) 33.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919393|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_F03.
         (435 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3XAE2|A3XAE2_9RHOB LysM domain protein OS=Roseobacter sp. ME...    34   4.1  
tr|Q0I6T8|Q0I6T8_SYNS3 Unnamed protein product OS=Synechococcus ...    33   5.4  
tr|A8JCN9|A8JCN9_CHLRE Predicted protein OS=Chlamydomonas reinha...    33   5.4  
tr|Q4JXV1|Q4JXV1_CORJK Sodium/glutamate symporter OS=Corynebacte...    33   9.2  
tr|A4HUB9|A4HUB9_LEIIN Putative uncharacterized protein OS=Leish...    33   9.3  

>tr|A3XAE2|A3XAE2_9RHOB LysM domain protein OS=Roseobacter sp.
           MED193 GN=MED193_05256 PE=4 SV=1
          Length = 689

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -1

Query: 396 SGGAAIELPETGEATTIEDPA---PAQEVASTSRISEEEE 286
           +GG+A+ +PETGEAT +   A   PA+E A T     E E
Sbjct: 140 AGGSAVAVPETGEATDLASSAGETPAKETALTETAQAEGE 179


>tr|Q0I6T8|Q0I6T8_SYNS3 Unnamed protein product OS=Synechococcus sp.
           (strain CC9311) GN=sync_2646 PE=4 SV=1
          Length = 182

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +3

Query: 207 LGVSSPIPFLPWHSPLLTFLFGHGAFVLLLQRFLKSRPP 323
           LGV   +P LP+  PLL  LFG     L+++ ++K +PP
Sbjct: 97  LGVFGLLPALPFGGPLLGALFGPWLGALVVETWVKKKPP 135


>tr|A8JCN9|A8JCN9_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_178555 PE=4 SV=1
          Length = 397

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +2

Query: 329 AGAGSSIVVASPVSGSSMAAPPDSILGLSLVG 424
           AGAG  +V A+P  GSS  A PD +LG    G
Sbjct: 206 AGAGGPVVSAAPARGSSAEADPDLVLGAGAGG 237


>tr|Q4JXV1|Q4JXV1_CORJK Sodium/glutamate symporter
           OS=Corynebacterium jeikeium (strain K411) GN=gltT PE=4
           SV=1
          Length = 457

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 217 PLPFHFCLGTLLC*LFYLVMEPLFFFFRDS*SRGHLLSWGW 339
           PL   F LG   C LF+ V+ P+  FF D      +  WGW
Sbjct: 320 PLAILFVLGIAYCCLFFFVIAPM--FFGDQWLERGIFGWGW 358


>tr|A4HUB9|A4HUB9_LEIIN Putative uncharacterized protein
           OS=Leishmania infantum GN=LinJ10.0410 PE=4 SV=1
          Length = 362

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +2

Query: 314 EATS*AGAGSSIVVASPVSGSSMAAPPDSILGLSLVG 424
           +A++  GAG + VV +PV  SS+ APP   LG   VG
Sbjct: 106 DASTDLGAGRAPVVVAPVMRSSVTAPPKKALGKVYVG 142