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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919395
Clone id YMU001_000124_F05
Library
Length 506
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000124_F05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AACTGGGCTTAGTGGATAGACCTTCCATGGACTCCCTTGCTGGGGATTTTAACACCACTG
CCTCTTCAAGGCCATTAACATTTGCACTACACTGTTGAGCTTCTGCAATAAAGCATCCAC
CTGATGGTACTCTTGATGAAGTTCTAGCTTGATTAAAGACACTTACAAAATCAGAATGAG
AACCCTCATTATCTTGGTCTGATTCTACAATTGCATTTGCTCTGTTTCTCTTATCTCTAG
CCCACATGGATGTCTCAAAGCTGAAAGCATCCCTTCCAGAACATTCTGGCACACTGAAAG
AAATCATAGCCCCTTCACTATGATGGGGTGTCAACGAAGATCTGTTTGAATACAATCGCA
ATTGGGCAGCTTTGACGCTAGCACAAAGCATCTCTCTTTTCTGAAAAAGCATCTCACATC
GTACATTGGCTGCATGCAGTGCTTCCTGTGCATCACGATACTGCTTCCTTGCAAAATGTT
CTCGAACTTCACATCTACGCCGATTT
■■Homology search results ■■ -
sp_hit_id Q9BL02
Definition sp|Q9BL02|CUT_CAEEL Homeobox protein cut-like ceh-44 OS=Caenorhabditis elegans
Align length 119
Score (bit) 38.5
E-value 0.018
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919395|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_F05.
         (506 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9BL02|CUT_CAEEL Homeobox protein cut-like ceh-44 OS=Caenorha...    39   0.018
sp|Q7VK57|PANC_HELHP Pantothenate synthetase OS=Helicobacter hep...    32   1.3  
sp|Q04964|SML1_YEAST Ribonucleotide reductase inhibitor protein ...    32   2.2  
sp|P07252|CBP1_YEAST Cytochrome B pre-mRNA-processing protein 1 ...    30   4.9  
sp|Q08888|SYR_BUCAP Arginyl-tRNA synthetase OS=Buchnera aphidico...    30   8.4  
sp|Q8C0N1|KIF2B_MOUSE Kinesin-like protein KIF2B OS=Mus musculus...    30   8.4  

>sp|Q9BL02|CUT_CAEEL Homeobox protein cut-like ceh-44
            OS=Caenorhabditis elegans GN=ceh-44 PE=2 SV=1
          Length = 1273

 Score = 38.5 bits (88), Expect = 0.018
 Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 16/119 (13%)
 Frame = -2

Query: 436  HAANVRCEMLFQKREMLCASVKAAQLRLYSNRSSLTPHHSEGAMISFSVPECSGRDAFSF 257
            H +N  CE +  K +M   S++  Q   +++R+       EG + S ++P  +   + ++
Sbjct: 1127 HPSNELCEQISLKLDM---SLRTVQNWFHNHRTRSKAREKEGKVYSDALPNGTAVKSLTW 1183

Query: 256  E-------------TSMWARDKRNRANAIVES---DQDNEGSHSDFVSVFNQARTSSRV 128
            +             TS WA D +NRA ++  S   D     ++S  +  F++A T+S V
Sbjct: 1184 KDDLQKMLDEAPAITSQWAPDYQNRAGSVKSSTSADSPTNNNYSSPIFSFDKASTTSTV 1242


>sp|Q7VK57|PANC_HELHP Pantothenate synthetase OS=Helicobacter
           hepaticus GN=panC PE=3 SV=1
          Length = 277

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = +3

Query: 198 SDSTIAFALFLLSLAHMDVSKLKASLPEHSGTLKEIIAPSL*WGVNEDLFEYNRNWAA 371
           +D TI F   + +L    +S +KASL E+  T+  I      +G NED   Y R   A
Sbjct: 19  NDKTIGFVATMGALHQGHLSLMKASLAENDYTIVSIFVNPTQFGANEDFGAYPRTLEA 76


>sp|Q04964|SML1_YEAST Ribonucleotide reductase inhibitor protein
           SML1 OS=Saccharomyces cerevisiae GN=SML1 PE=1 SV=1
          Length = 104

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 28/105 (26%), Positives = 47/105 (44%)
 Frame = -2

Query: 457 RDAQEALHAANVRCEMLFQKREMLCASVKAAQLRLYSNRSSLTPHHSEGAMISFSVPECS 278
           +++Q+  +A N RC+   Q+      +V  A+ R    R  L P  +E  M+S      S
Sbjct: 2   QNSQDYFYAQN-RCQQ--QQAPSTLRTVTMAEFR----RVPLPPM-AEVPMLSTQNSMGS 53

Query: 277 GRDAFSFETSMWARDKRNRANAIVESDQDNEGSHSDFVSVFNQAR 143
              A +    MW +D   R N+I     +N+    +  S+FNQ +
Sbjct: 54  SASASASSLEMWEKDLEERLNSIDHDMNNNKFGSGELKSMFNQGK 98


>sp|P07252|CBP1_YEAST Cytochrome B pre-mRNA-processing protein 1
           OS=Saccharomyces cerevisiae GN=CBP1 PE=1 SV=1
          Length = 654

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = -2

Query: 229 RNRANAIVESDQDNEGSHSDFVSVFNQARTSSRVPSGGCFIAEAQQCSANVNGLEEAVVL 50
           R + N+++ES   +E    DF+S  N+ +TSS    G        QC  N++ + + V  
Sbjct: 70  RKQENSLLESSILHEVKIEDFISFINRTKTSSMTTRGIYRRECLYQCKKNLDLVNQVVSQ 129

Query: 49  KSPAR 35
            S  R
Sbjct: 130 VSSVR 134


>sp|Q08888|SYR_BUCAP Arginyl-tRNA synthetase OS=Buchnera aphidicola
           subsp. Schizaphis graminum GN=argS PE=3 SV=2
          Length = 580

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 21/84 (25%), Positives = 37/84 (44%)
 Frame = -2

Query: 439 LHAANVRCEMLFQKREMLCASVKAAQLRLYSNRSSLTPHHSEGAMISFSVPECSGRDAFS 260
           LHA  +      ++ + L  S   A+   Y +++ L  HH  G M+S +      RD  +
Sbjct: 332 LHADRIIYYTDSRQYQHLLQSWTIAEKANYISKNLLLEHHMFGMMLSKNRRPFKTRDGNT 391

Query: 259 FETSMWARDKRNRANAIVESDQDN 188
            + S    +  NRA  +++  Q N
Sbjct: 392 IKLSNLLNESINRATNLIQKKQPN 415


>sp|Q8C0N1|KIF2B_MOUSE Kinesin-like protein KIF2B OS=Mus musculus
           GN=Kif2b PE=2 SV=1
          Length = 668

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -2

Query: 157 FNQARTSSRVPSGGCFIAEAQQCSANVNGL---EEAVVLKSPARESME 23
           + Q  +      GG F+ +AQ CS  +  L   +  ++LK+PA E +E
Sbjct: 302 YGQTGSGKTHTMGGAFLGKAQDCSKGIYALVAQDVFLLLKTPAYEKLE 349
tr_hit_id A9T781
Definition tr|A9T781|A9T781_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 126
Score (bit) 54.7
E-value 3.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919395|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_F05.
         (506 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T781|A9T781_PHYPA Predicted protein OS=Physcomitrella paten...    55   3e-06
tr|A7PIY9|A7PIY9_VITVI Chromosome chr13 scaffold_17, whole genom...    49   1e-04
tr|A9T5Q4|A9T5Q4_PHYPA Predicted protein (Fragment) OS=Physcomit...    49   2e-04
tr|Q2QNG5|Q2QNG5_ORYSJ Expressed protein (Putative uncharacteriz...    45   0.002
tr|B8BMJ8|B8BMJ8_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.002
tr|O80645|O80645_ARATH Putative uncharacterized protein At2g3958...    39   0.11 
tr|A2ECG2|A2ECG2_TRIVA Putative uncharacterized protein OS=Trich...    39   0.19 
tr|Q5BLE4|Q5BLE4_DANRE KIAA0261 protein (Fragment) OS=Danio reri...    38   0.32 
tr|Q58EF5|Q58EF5_DANRE KIAA0261 protein (Fragment) OS=Danio reri...    37   0.54 
tr|B4LQP0|B4LQP0_DROVI GJ22226 OS=Drosophila virilis GN=GJ22226 ...    33   6.0  
tr|B4JQY9|B4JQY9_DROGR GH13785 OS=Drosophila grimshawi GN=GH1378...    33   6.0  

>tr|A9T781|A9T781_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_89003 PE=4 SV=1
          Length = 2543

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 2/126 (1%)
 Frame = -2

Query: 502  RRRCEVREHFARKQYRDAQEALHAANVRCEMLFQKREMLCASVKAAQLRLYSNRSSLTPH 323
            RR+CE+RE   RK YRDAQ AL AA+ RCE L ++++ L   V+ A+L +    SS    
Sbjct: 1078 RRQCEIRERELRKAYRDAQIALSAADTRCEALRRRQKFLSVQVQNAELHIPQQPSSSI-- 1135

Query: 322  HSEGAMISFSVPECSGRDAFS--FETSMWARDKRNRANAIVESDQDNEGSHSDFVSVFNQ 149
            HS G+++ +        D  S  + +  W   K +     +E + D+  +    V+   Q
Sbjct: 1136 HS-GSLVPYDNSVAPRTDGLSPAYPSIAWGSAKPS-----IEQETDHHMNTLGNVASVQQ 1189

Query: 148  ARTSSR 131
            A T ++
Sbjct: 1190 AGTRNQ 1195


>tr|A7PIY9|A7PIY9_VITVI Chromosome chr13 scaffold_17, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00018526001
           PE=4 SV=1
          Length = 1159

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 23/45 (51%), Positives = 29/45 (64%)
 Frame = -2

Query: 502 RRRCEVREHFARKQYRDAQEALHAANVRCEMLFQKREMLCASVKA 368
           RR+CE+ E  A K YR AQ AL  AN RC  L++KREM  A  ++
Sbjct: 24  RRKCEIEERNALKAYRKAQRALIEANARCTYLYRKREMFSAQFRS 68


>tr|A9T5Q4|A9T5Q4_PHYPA Predicted protein (Fragment) OS=Physcomitrella
            patens subsp. patens GN=PHYPADRAFT_88430 PE=4 SV=1
          Length = 1646

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 29/67 (43%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
 Frame = -2

Query: 505  NRRRCEVREHFARKQYRDAQEALHAANVRCEMLFQKREMLCASVKAAQLRLYSNRS---- 338
            NR  C  +E    K Y DAQ AL AA  RCE LFQ R+ L   V+ A+L L+   S    
Sbjct: 1075 NRGDCVTQERELCKAYHDAQTALRAATARCETLFQSRKFLRVLVQIAELILFQQASYSMY 1134

Query: 337  --SLTPH 323
               L PH
Sbjct: 1135 DNRLVPH 1141


>tr|Q2QNG5|Q2QNG5_ORYSJ Expressed protein (Putative uncharacterized
           protein) OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g37890 PE=4 SV=1
          Length = 1696

 Score = 45.4 bits (106), Expect = 0.002
 Identities = 23/44 (52%), Positives = 29/44 (65%)
 Frame = -2

Query: 505 NRRRCEVREHFARKQYRDAQEALHAANVRCEMLFQKREMLCASV 374
           +RR+CEV E  A + YR AQ AL  AN RC +L +KRE+  A V
Sbjct: 542 HRRKCEVEEREALRAYRRAQRALIEANERCAILRRKRELCSAQV 585


>tr|B8BMJ8|B8BMJ8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_38762 PE=4 SV=1
          Length = 1612

 Score = 45.4 bits (106), Expect = 0.002
 Identities = 23/44 (52%), Positives = 29/44 (65%)
 Frame = -2

Query: 505 NRRRCEVREHFARKQYRDAQEALHAANVRCEMLFQKREMLCASV 374
           +RR+CEV E  A + YR AQ AL  AN RC +L +KRE+  A V
Sbjct: 496 HRRKCEVEEREALRAYRRAQRALIEANERCAILRRKRELCSAQV 539


>tr|O80645|O80645_ARATH Putative uncharacterized protein At2g39580
           OS=Arabidopsis thaliana GN=At2g39580 PE=2 SV=1
          Length = 1567

 Score = 39.3 bits (90), Expect = 0.11
 Identities = 20/41 (48%), Positives = 25/41 (60%)
 Frame = -2

Query: 502 RRRCEVREHFARKQYRDAQEALHAANVRCEMLFQKREMLCA 380
           +R  E+ E  A K YR AQ +L  AN RC  L+ KRE+L A
Sbjct: 441 KRLFEIEERNALKVYRKAQRSLIEANARCAELYSKREILSA 481


>tr|A2ECG2|A2ECG2_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_060330 PE=4 SV=1
          Length = 202

 Score = 38.5 bits (88), Expect = 0.19
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 262 SFETSMWARDKRNRANAIVESDQDNEGSHSDFVSVFNQARTSS-RVPSGGCFIAEA 98
           SF TS WA+DK     A +   +D      D V+ F    TS  R P+GG FI E+
Sbjct: 122 SFSTSNWAKDKEYGLFAYIAGKKDKSNIKIDQVTTFADGNTSHIRSPNGGIFIKES 177


>tr|Q5BLE4|Q5BLE4_DANRE KIAA0261 protein (Fragment) OS=Danio rerio
           GN=KIAA0261 PE=2 SV=1
          Length = 424

 Score = 37.7 bits (86), Expect = 0.32
 Identities = 24/88 (27%), Positives = 38/88 (43%)
 Frame = -2

Query: 280 SGRDAFSFETSMWARDKRNRANAIVESDQDNEGSHSDFVSVFNQARTSSRVPSGGCFIAE 101
           S  D F F++   ++   +R  A  E D D  G  ++      Q +T +  PSGG  +  
Sbjct: 69  SSEDPFGFDSDDESKTVTSRDTAQSEMDSDTAGPKNE------QLKTQTEKPSGGTLVTS 122

Query: 100 AQQCSANVNGLEEAVVLKSPARESMEGL 17
                ++ N    AV + SPA+ S   L
Sbjct: 123 TSSLGSSTNISRGAVGVNSPAKTSPASL 150


>tr|Q58EF5|Q58EF5_DANRE KIAA0261 protein (Fragment) OS=Danio rerio
           GN=KIAA0261 PE=2 SV=1
          Length = 1062

 Score = 37.0 bits (84), Expect = 0.54
 Identities = 24/88 (27%), Positives = 37/88 (42%)
 Frame = -2

Query: 280 SGRDAFSFETSMWARDKRNRANAIVESDQDNEGSHSDFVSVFNQARTSSRVPSGGCFIAE 101
           S  D F F++   ++   +R  A  E D D  G  ++      Q +T    PSGG  +  
Sbjct: 69  SSEDPFGFDSDDESKTVTSRDTAQSEMDSDTAGPKNE------QLKTQMEKPSGGTLVTS 122

Query: 100 AQQCSANVNGLEEAVVLKSPARESMEGL 17
                ++ N    AV + SPA+ S   L
Sbjct: 123 TSSLGSSTNISRGAVGVNSPAKTSPASL 150


>tr|B4LQP0|B4LQP0_DROVI GJ22226 OS=Drosophila virilis GN=GJ22226
           PE=4 SV=1
          Length = 216

 Score = 33.5 bits (75), Expect = 6.0
 Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
 Frame = -2

Query: 337 SLTPHHSEGAMISFSVPECSGRDAFSFETSMWARDKRNRANA-IVESDQDNEGSHSDF-V 164
           SL P +  GA  +  V +   +D+F      W ++   +A+  IV +   N+   S+  V
Sbjct: 92  SLAPMYYRGAQAAIVVYDIQNQDSFQ-RAKTWVKELHKQASPNIVIALAGNKADLSNIRV 150

Query: 163 SVFNQARTSSRVPSGGCFIAEAQQCSANVNGLEEAVVLKSPARESMEGLSTKPS 2
             F++A+  +   +G  F+  + +   NVN +  A+  K P  ++ +G   KP+
Sbjct: 151 VEFDEAKQYAE-ENGLLFMETSAKTGMNVNDIFLAIAKKLPKNDNNQGSVIKPN 203