NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919398
Clone id YMU001_000124_F08
Library
Length 161
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000124_F08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATATTACCTGCAGGTACTCGGTAGCGAAATCCTTGTCGGGTAAGTTCCGACCCGCACGAA
AGGCGTAACGATCTGGGCGCTGTCTCGGAGAAAGACTCGGTGAAATAGACCATGTCTGTG
AAGATGCGGACTACCCGCACCTGGACAGAAAGACCCTATGA
■■Homology search results ■■ -
sp_hit_id Q3BAI2
Definition sp|Q3BAI2|YCX91_PHAAO Uncharacterized protein ORF91 OS=Phalaenopsis aphrodite subsp. formosana
Align length 36
Score (bit) 57.8
E-value 2.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919398|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_F08.
         (161 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3BAI2|YCX91_PHAAO Uncharacterized protein ORF91 OS=Phalaenop...    58   2e-08

>sp|Q3BAI2|YCX91_PHAAO Uncharacterized protein ORF91 OS=Phalaenopsis
           aphrodite subsp. formosana PE=4 SV=1
          Length = 91

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 28/36 (77%), Positives = 31/36 (86%)
 Frame = -2

Query: 109 SISPSLSPRQRPDRYAFRAGRNLPDKDFATEYLQVI 2
           SISPSLSPRQ PDRYAFRAGRNLPDK+F   YL+ +
Sbjct: 11  SISPSLSPRQCPDRYAFRAGRNLPDKEF--RYLRTV 44
tr_hit_id A4QMC2
Definition tr|A4QMC2|A4QMC2_PINKO ORF82c OS=Pinus koraiensis
Align length 36
Score (bit) 57.8
E-value 3.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919398|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_F08.
         (161 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4QMC2|A4QMC2_PINKO ORF82c OS=Pinus koraiensis PE=4 SV=1            58   3e-07
tr|B0N9Y8|B0N9Y8_EUBSP Putative uncharacterized protein OS=Clost...    54   3e-06
tr|B0TIE7|B0TIE7_HELMI Putative uncharacterized protein OS=Helio...    51   3e-05
tr|Q6YQ83|Q6YQ83_ONYPE Putative uncharacterized protein OS=Onion...    49   1e-04
tr|Q2NJ05|Q2NJ05_AYWBP Putative uncharacterized protein OS=Aster...    49   1e-04
tr|Q1MP75|Q1MP75_LAWIP Putative uncharacterized protein LI1148 O...    49   1e-04
tr|B6G1S7|B6G1S7_9CLOT Putative uncharacterized protein OS=Clost...    49   2e-04
tr|B1A1D9|B1A1D9_9SPHI Putative uncharacterized protein (Fragmen...    49   2e-04
tr|B7R8W3|B7R8W3_9THEO Putative uncharacterized protein OS=Carbo...    48   2e-04
tr|A7VEM4|A7VEM4_9CLOT Putative uncharacterized protein OS=Clost...    46   0.001
tr|A7VD50|A7VD50_9CLOT Putative uncharacterized protein OS=Clost...    46   0.001
tr|B0NER3|B0NER3_EUBSP Putative uncharacterized protein OS=Clost...    45   0.002
tr|B0MI53|B0MI53_9FIRM Putative uncharacterized protein OS=Anaer...    45   0.002
tr|B0MGJ9|B0MGJ9_9FIRM Putative uncharacterized protein OS=Anaer...    45   0.002
tr|A8SSN6|A8SSN6_9FIRM Putative uncharacterized protein OS=Copro...    45   0.002
tr|A5Z326|A5Z326_9FIRM Putative uncharacterized protein OS=Eubac...    45   0.002
tr|A4EB58|A4EB58_9ACTN Putative uncharacterized protein OS=Colli...    45   0.002
tr|B5CLP6|B5CLP6_9FIRM Putative uncharacterized protein OS=Rumin...    44   0.003
tr|A8RZB8|A8RZB8_9CLOT Putative uncharacterized protein OS=Clost...    44   0.003
tr|A7B6K2|A7B6K2_RUMGN Putative uncharacterized protein OS=Rumin...    44   0.003
tr|A7B5W5|A7B5W5_RUMGN Putative uncharacterized protein OS=Rumin...    44   0.003
tr|A6BL00|A6BL00_9FIRM Putative uncharacterized protein OS=Dorea...    44   0.003
tr|A6BKZ1|A6BKZ1_9FIRM Putative uncharacterized protein OS=Dorea...    44   0.003
tr|A5KR88|A5KR88_9FIRM Putative uncharacterized protein OS=Rumin...    44   0.003
tr|B1QFU1|B1QFU1_CLOBO Putative uncharacterized protein (Fragmen...    44   0.004
tr|A0Q208|A0Q208_CLONN Putative uncharacterized protein OS=Clost...    44   0.005
tr|A0PXN7|A0PXN7_CLONN Putative uncharacterized protein OS=Clost...    44   0.005
tr|B1BEE0|B1BEE0_CLOBO Putative uncharacterized protein OS=Clost...    44   0.005
tr|B1BED5|B1BED5_CLOBO Putative uncharacterized protein OS=Clost...    44   0.005
tr|B1BEC2|B1BEC2_CLOBO Putative uncharacterized protein OS=Clost...    44   0.005

>tr|A4QMC2|A4QMC2_PINKO ORF82c OS=Pinus koraiensis PE=4 SV=1
          Length = 82

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 28/36 (77%), Positives = 31/36 (86%)
 Frame = -2

Query: 109 SISPSLSPRQRPDRYAFRAGRNLPDKDFATEYLQVI 2
           SISPSLSPRQ PDRYAFRAGRNLPDK+F   YL+ +
Sbjct: 2   SISPSLSPRQCPDRYAFRAGRNLPDKEF--RYLRTV 35


>tr|B0N9Y8|B0N9Y8_EUBSP Putative uncharacterized protein
           OS=Clostridium scindens ATCC 35704 GN=CLOSCI_00250 PE=4
           SV=1
          Length = 61

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 28/42 (66%), Positives = 29/42 (69%)
 Frame = -1

Query: 155 GLSVQVRVVRIFTDMVYFTESFSETAPRSLRLSCGSELTRQG 30
           GLSV  RV  IFT    FT    ET P+SLRLSCGSELTRQG
Sbjct: 16  GLSVLARVTSIFTGTFNFTGCIVETVPKSLRLSCGSELTRQG 57


>tr|B0TIE7|B0TIE7_HELMI Putative uncharacterized protein
           OS=Heliobacterium modesticaldum (strain ATCC 51547 /
           Ice1) GN=Helmi_22630 PE=4 SV=1
          Length = 147

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 26/36 (72%), Positives = 29/36 (80%)
 Frame = -2

Query: 109 SISPSLSPRQRPDRYAFRAGRNLPDKDFATEYLQVI 2
           SISPS S RQ PDRYAFRAGRNLPDK+F   YL+ +
Sbjct: 100 SISPSPSLRQCPDRYAFRAGRNLPDKEF--RYLRTV 133


>tr|Q6YQ83|Q6YQ83_ONYPE Putative uncharacterized protein OS=Onion
           yellows phytoplasma GN=PAM250 PE=4 SV=1
          Length = 213

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 24/35 (68%), Positives = 28/35 (80%)
 Frame = -2

Query: 106 ISPSLSPRQRPDRYAFRAGRNLPDKDFATEYLQVI 2
           ISP L  RQRP+RYAFRAGRNLPDK+F   YL+ +
Sbjct: 137 ISPRLLLRQRPNRYAFRAGRNLPDKEF--RYLRTV 169


>tr|Q2NJ05|Q2NJ05_AYWBP Putative uncharacterized protein OS=Aster
           yellows witches'-broom phytoplasma (strain AYWB)
           GN=AYWB_261 PE=4 SV=1
          Length = 213

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 24/35 (68%), Positives = 28/35 (80%)
 Frame = -2

Query: 106 ISPSLSPRQRPDRYAFRAGRNLPDKDFATEYLQVI 2
           ISP L  RQRP+RYAFRAGRNLPDK+F   YL+ +
Sbjct: 137 ISPRLLLRQRPNRYAFRAGRNLPDKEF--RYLRTV 169


>tr|Q1MP75|Q1MP75_LAWIP Putative uncharacterized protein LI1148
           OS=Lawsonia intracellularis (strain PHE/MN1-00)
           GN=LI1148 PE=4 SV=1
          Length = 99

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 25/36 (69%), Positives = 28/36 (77%)
 Frame = -2

Query: 109 SISPSLSPRQRPDRYAFRAGRNLPDKDFATEYLQVI 2
           SISPSL PRQ  DRYA RAGRNLPDK+F   YL+ +
Sbjct: 49  SISPSLWPRQCGDRYAIRAGRNLPDKEF--RYLRTV 82


>tr|B6G1S7|B6G1S7_9CLOT Putative uncharacterized protein
           OS=Clostridium hiranonis DSM 13275 GN=CLOHIR_02085 PE=4
           SV=1
          Length = 75

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 24/36 (66%), Positives = 29/36 (80%)
 Frame = -2

Query: 109 SISPSLSPRQRPDRYAFRAGRNLPDKDFATEYLQVI 2
           +ISPSL  RQ P+RYAFRAGRNLPDK+F   YL+ +
Sbjct: 25  TISPSLLLRQCPNRYAFRAGRNLPDKEF--RYLRTV 58


>tr|B1A1D9|B1A1D9_9SPHI Putative uncharacterized protein (Fragment)
           OS=Flammeovirga yaeyamensis PE=4 SV=1
          Length = 83

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 24/36 (66%), Positives = 27/36 (75%)
 Frame = -2

Query: 109 SISPSLSPRQRPDRYAFRAGRNLPDKDFATEYLQVI 2
           SISPS  PRQRPDR   RAGRNLPDK+F   YL+ +
Sbjct: 49  SISPSSWPRQRPDRCTIRAGRNLPDKEF--RYLRTV 82


>tr|B7R8W3|B7R8W3_9THEO Putative uncharacterized protein
           OS=Carboxydibrachium pacificum DSM 12653 GN=CDSM653_949
           PE=4 SV=1
          Length = 155

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 23/34 (67%), Positives = 26/34 (76%)
 Frame = -2

Query: 103 SPSLSPRQRPDRYAFRAGRNLPDKDFATEYLQVI 2
           SP  S RQRP RYAFRAGRNLPDK+F   YL+ +
Sbjct: 27  SPGPSSRQRPSRYAFRAGRNLPDKEF--RYLRTV 58


>tr|A7VEM4|A7VEM4_9CLOT Putative uncharacterized protein
           OS=Clostridium sp. L2-50 GN=CLOL250_01366 PE=4 SV=1
          Length = 123

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 22/36 (61%), Positives = 27/36 (75%)
 Frame = -2

Query: 109 SISPSLSPRQRPDRYAFRAGRNLPDKDFATEYLQVI 2
           SISP +  RQ P+ YAFRAGRNLPDK+F   YL+ +
Sbjct: 44  SISPGVLSRQCPNHYAFRAGRNLPDKEF--RYLRTV 77