BP919401 |
Clone id |
YMU001_000124_F11 |
Library |
YMU01 |
Length |
135 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000124_F11. |
Accession |
BP919401 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL772Contig1 |
Sequence |
GTATCACATCCCCGGGTTTTAATGCATTATCAGCTCCACAGTCTCCACACAAGTATGAGA CTGGTTCAGGATGAGGTTGAGCCATTCCTCCATCCATAGATTCGTACTTGGATTAAACAA CGGTACAAAAACCTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P48011 |
Definition |
sp|P48011|RPAB4_SCHPO DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Schizosaccharomyces pombe |
Align length |
32 |
Score (bit) |
32.0 |
E-value |
0.98 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919401|Adiantum capillus-veneris mRNA, clone: YMU001_000124_F11. (135 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P48011|RPAB4_SCHPO DNA-directed RNA polymerases I, II, and II... 32 0.98 sp|Q54R66|RPAB4_DICDI DNA-directed RNA polymerases I, II, and II... 30 3.7 sp|Q63871|RPAB4_MOUSE DNA-directed RNA polymerases I, II, and II... 30 4.9 sp|P53803|RPAB4_HUMAN DNA-directed RNA polymerases I, II, and II... 30 4.9 sp|Q3ZBC0|RPAB4_BOVIN DNA-directed RNA polymerases I, II, and II... 30 4.9 sp|Q06RD2|PSAB_JASNU Photosystem I P700 chlorophyll a apoprotein... 29 6.3 sp|A1E9S3|PSAB_SORBI Photosystem I P700 chlorophyll a apoprotein... 29 8.3 sp|Q6ENW4|PSAB_SACOF Photosystem I P700 chlorophyll a apoprotein... 29 8.3 sp|Q6L399|PSAB_SACHY Photosystem I P700 chlorophyll a apoprotein... 29 8.3 sp|P04967|PSAB_MAIZE Photosystem I P700 chlorophyll a apoprotein... 29 8.3
>sp|P48011|RPAB4_SCHPO DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Schizosaccharomyces pombe GN=rpc10 PE=2 SV=2 Length = 63
Score = 32.0 bits (71), Expect = 0.98 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%) Frame = -3
Query: 91 GGMA--QPHPEPVSYLCGDCGADNALKPGDVI 2 GG A P P + YLC DCGA N ++ +VI Sbjct: 8 GGTAFNPPRPATMIYLCADCGARNTIQAKEVI 39
>sp|Q54R66|RPAB4_DICDI DNA-directed RNA polymerases I, II, and III subunit rpabc4 OS=Dictyostelium discoideum GN=polr2k PE=3 SV=1 Length = 46
Score = 30.0 bits (66), Expect = 3.7 Identities = 9/21 (42%), Positives = 16/21 (76%) Frame = -3
Query: 64 PVSYLCGDCGADNALKPGDVI 2 P Y+CG+CGA++ +KP + + Sbjct: 2 PCLYICGECGAEHEIKPKEPV 22
>sp|Q63871|RPAB4_MOUSE DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Mus musculus GN=Polr2k PE=2 SV=2 Length = 58
Score = 29.6 bits (65), Expect = 4.9 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = -3
Query: 76 PHPEPVSYLCGDCGADNALKPGDVI 2 P +P+ Y+CG+C +N +K D I Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPI 34
>sp|P53803|RPAB4_HUMAN DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Homo sapiens GN=POLR2K PE=2 SV=1 Length = 58
Score = 29.6 bits (65), Expect = 4.9 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = -3
Query: 76 PHPEPVSYLCGDCGADNALKPGDVI 2 P +P+ Y+CG+C +N +K D I Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPI 34
>sp|Q3ZBC0|RPAB4_BOVIN DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Bos taurus GN=POLR2K PE=3 SV=1 Length = 58
Score = 29.6 bits (65), Expect = 4.9 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = -3
Query: 76 PHPEPVSYLCGDCGADNALKPGDVI 2 P +P+ Y+CG+C +N +K D I Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPI 34
>sp|Q06RD2|PSAB_JASNU Photosystem I P700 chlorophyll a apoprotein A2 OS=Jasminum nudiflorum GN=psaB PE=3 SV=1 Length = 734
Score = 29.3 bits (64), Expect = 6.3 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = -1
Query: 123 PLFNPSTNLWMEEWLNLILNQSHTCVETV 37 P FN N+W+ WLN I S++ T+ Sbjct: 484 PAFNAGRNIWLPGWLNAINENSNSLFLTI 512
>sp|A1E9S3|PSAB_SORBI Photosystem I P700 chlorophyll a apoprotein A2 OS=Sorghum bicolor GN=psaB PE=3 SV=1 Length = 734
Score = 28.9 bits (63), Expect = 8.3 Identities = 10/29 (34%), Positives = 16/29 (55%) Frame = -1
Query: 123 PLFNPSTNLWMEEWLNLILNQSHTCVETV 37 P FN N+W+ WLN + S++ T+ Sbjct: 484 PAFNAGRNIWLPGWLNAVNENSNSLFLTI 512
>sp|Q6ENW4|PSAB_SACOF Photosystem I P700 chlorophyll a apoprotein A2 OS=Saccharum officinarum GN=psaB PE=3 SV=1 Length = 734
Score = 28.9 bits (63), Expect = 8.3 Identities = 10/29 (34%), Positives = 16/29 (55%) Frame = -1
Query: 123 PLFNPSTNLWMEEWLNLILNQSHTCVETV 37 P FN N+W+ WLN + S++ T+ Sbjct: 484 PAFNAGRNIWLPGWLNAVNENSNSLFLTI 512
>sp|Q6L399|PSAB_SACHY Photosystem I P700 chlorophyll a apoprotein A2 OS=Saccharum hybrid GN=psaB PE=3 SV=1 Length = 734
Score = 28.9 bits (63), Expect = 8.3 Identities = 10/29 (34%), Positives = 16/29 (55%) Frame = -1
Query: 123 PLFNPSTNLWMEEWLNLILNQSHTCVETV 37 P FN N+W+ WLN + S++ T+ Sbjct: 484 PAFNAGRNIWLPGWLNAVNENSNSLFLTI 512
>sp|P04967|PSAB_MAIZE Photosystem I P700 chlorophyll a apoprotein A2 OS=Zea mays GN=psaB PE=3 SV=2 Length = 735
Score = 28.9 bits (63), Expect = 8.3 Identities = 10/29 (34%), Positives = 16/29 (55%) Frame = -1
Query: 123 PLFNPSTNLWMEEWLNLILNQSHTCVETV 37 P FN N+W+ WLN + S++ T+ Sbjct: 485 PTFNAGRNIWLPGWLNAVNENSNSLFLTI 513
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9U0K9 |
Definition |
tr|A9U0K9|A9U0K9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
32 |
Score (bit) |
62.4 |
E-value |
1.0e-08 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919401|Adiantum capillus-veneris mRNA, clone: YMU001_000124_F11. (135 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9U0K9|A9U0K9_PHYPA Predicted protein OS=Physcomitrella paten... 62 1e-08 tr|A9NP23|A9NP23_PICSI Putative uncharacterized protein OS=Picea... 53 9e-06 tr|B8AY54|B8AY54_ORYSI Putative uncharacterized protein OS=Oryza... 52 1e-05 tr|B8A9M5|B8A9M5_ORYSI Putative uncharacterized protein OS=Oryza... 52 1e-05 tr|B6T0X3|B6T0X3_MAIZE DNA-directed RNA polymerases I, II, and I... 52 1e-05 tr|B6SPH6|B6SPH6_MAIZE DNA-directed RNA polymerases I, II, and I... 52 1e-05 tr|A7R4J8|A7R4J8_VITVI Chromosome undetermined scaffold_712, who... 52 2e-05 tr|A9NKF0|A9NKF0_PICSI Putative uncharacterized protein OS=Picea... 51 2e-05 tr|Q9FLM8|Q9FLM8_ARATH Similarity to metallothionein-I gene tran... 46 8e-04 tr|B6TU31|B6TU31_MAIZE DNA-directed RNA polymerases I, II, and I... 40 0.044 tr|Q8L449|Q8L449_ORYSJ Putative uncharacterized protein P0617C02... 40 0.075 tr|B8B6J2|B8B6J2_ORYSI Putative uncharacterized protein OS=Oryza... 40 0.075 tr|A8ITN4|A8ITN4_CHLRE Subunit f DNA-directed RNA polymerase OS=... 35 2.4 tr|Q4N0U1|Q4N0U1_THEPA Transcription activator, putative OS=Thei... 35 2.4 tr|B6K0B9|B6K0B9_SCHJP DNA-directed RNA polymerase I OS=Schizosa... 35 2.4 tr|Q01EI8|Q01EI8_OSTTA Rpc10 RPC10 subunit of RNA polymerases I,... 34 3.2 tr|A4RSR4|A4RSR4_OSTLU RPC10 subunit of RNA polymerases I, II, a... 34 3.2 tr|Q9C8M4|Q9C8M4_ARATH RNA polymerase II, putative; 28841-29486 ... 33 5.4 tr|Q4UD38|Q4UD38_THEAN Putative uncharacterized protein OS=Theil... 33 5.4 tr|B6KNP5|B6KNP5_TOXGO Transcription activator, putative OS=Toxo... 33 5.4
>tr|A9U0K9|A9U0K9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_63544 PE=4 SV=1 Length = 56
Score = 62.4 bits (150), Expect = 1e-08 Identities = 26/32 (81%), Positives = 28/32 (87%) Frame = -3
Query: 97 MDGGMAQPHPEPVSYLCGDCGADNALKPGDVI 2 MDG M+ P PEPV+YLCGDCGADN LKPGDVI Sbjct: 1 MDGSMSAPPPEPVTYLCGDCGADNTLKPGDVI 32
>tr|A9NP23|A9NP23_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 53
Score = 52.8 bits (125), Expect = 9e-06 Identities = 24/32 (75%), Positives = 27/32 (84%) Frame = -3
Query: 97 MDGGMAQPHPEPVSYLCGDCGADNALKPGDVI 2 MDG A PEPVSY+CGDCGA+N+LKPGDVI Sbjct: 1 MDGHAA---PEPVSYICGDCGAENSLKPGDVI 29
>tr|B8AY54|B8AY54_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_18488 PE=4 SV=1 Length = 87
Score = 52.0 bits (123), Expect = 1e-05 Identities = 22/28 (78%), Positives = 23/28 (82%) Frame = -3
Query: 85 MAQPHPEPVSYLCGDCGADNALKPGDVI 2 M PEPVSYLCGDCGA+N LKPGDVI Sbjct: 1 MDPQQPEPVSYLCGDCGAENTLKPGDVI 28
>tr|B8A9M5|B8A9M5_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_02267 PE=4 SV=1 Length = 52
Score = 52.0 bits (123), Expect = 1e-05 Identities = 22/28 (78%), Positives = 23/28 (82%) Frame = -3
Query: 85 MAQPHPEPVSYLCGDCGADNALKPGDVI 2 M PEPVSYLCGDCGA+N LKPGDVI Sbjct: 1 MDPQQPEPVSYLCGDCGAENTLKPGDVI 28
>tr|B6T0X3|B6T0X3_MAIZE DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide OS=Zea mays PE=4 SV=1 Length = 52
Score = 52.0 bits (123), Expect = 1e-05 Identities = 22/28 (78%), Positives = 23/28 (82%) Frame = -3
Query: 85 MAQPHPEPVSYLCGDCGADNALKPGDVI 2 M PEPVSYLCGDCGA+N LKPGDVI Sbjct: 1 MDPQQPEPVSYLCGDCGAENTLKPGDVI 28
>tr|B6SPH6|B6SPH6_MAIZE DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide OS=Zea mays PE=4 SV=1 Length = 52
Score = 52.0 bits (123), Expect = 1e-05 Identities = 22/28 (78%), Positives = 23/28 (82%) Frame = -3
Query: 85 MAQPHPEPVSYLCGDCGADNALKPGDVI 2 M PEPVSYLCGDCGA+N LKPGDVI Sbjct: 1 MDPQQPEPVSYLCGDCGAENTLKPGDVI 28
>tr|A7R4J8|A7R4J8_VITVI Chromosome undetermined scaffold_712, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00004487001 PE=4 SV=1 Length = 74
Score = 51.6 bits (122), Expect = 2e-05 Identities = 20/25 (80%), Positives = 22/25 (88%) Frame = -3
Query: 76 PHPEPVSYLCGDCGADNALKPGDVI 2 P PEPVSY+CGDCG +N LKPGDVI Sbjct: 3 PQPEPVSYICGDCGQENTLKPGDVI 27
>tr|A9NKF0|A9NKF0_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 53
Score = 51.2 bits (121), Expect = 2e-05 Identities = 20/23 (86%), Positives = 23/23 (100%) Frame = -3
Query: 70 PEPVSYLCGDCGADNALKPGDVI 2 PEPVSY+CGDCGA+N+LKPGDVI Sbjct: 7 PEPVSYICGDCGAENSLKPGDVI 29
>tr|Q9FLM8|Q9FLM8_ARATH Similarity to metallothionein-I gene transcription activator (DNA directed RNA polymerase II polypeptide K) (Putative uncharacterized protein At5g41010) OS=Arabidopsis thaliana GN=At5g41010 PE=2 SV=1 Length = 51
Score = 46.2 bits (108), Expect = 8e-04 Identities = 18/25 (72%), Positives = 21/25 (84%) Frame = -3
Query: 76 PHPEPVSYLCGDCGADNALKPGDVI 2 P PEPV+Y+CGDCG +N LK GDVI Sbjct: 3 PAPEPVTYVCGDCGQENTLKSGDVI 27
>tr|B6TU31|B6TU31_MAIZE DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide OS=Zea mays PE=4 SV=1 Length = 53
Score = 40.4 bits (93), Expect = 0.044 Identities = 15/23 (65%), Positives = 20/23 (86%) Frame = -3
Query: 70 PEPVSYLCGDCGADNALKPGDVI 2 PEPV+Y+CGDCGA+N +K DV+ Sbjct: 7 PEPVTYVCGDCGAENTVKLVDVV 29
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