NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919401
Clone id YMU001_000124_F11
Library
Length 135
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000124_F11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTATCACATCCCCGGGTTTTAATGCATTATCAGCTCCACAGTCTCCACACAAGTATGAGA
CTGGTTCAGGATGAGGTTGAGCCATTCCTCCATCCATAGATTCGTACTTGGATTAAACAA
CGGTACAAAAACCTT
■■Homology search results ■■ -
sp_hit_id P48011
Definition sp|P48011|RPAB4_SCHPO DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Schizosaccharomyces pombe
Align length 32
Score (bit) 32.0
E-value 0.98
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919401|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_F11.
         (135 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P48011|RPAB4_SCHPO DNA-directed RNA polymerases I, II, and II...    32   0.98 
sp|Q54R66|RPAB4_DICDI DNA-directed RNA polymerases I, II, and II...    30   3.7  
sp|Q63871|RPAB4_MOUSE DNA-directed RNA polymerases I, II, and II...    30   4.9  
sp|P53803|RPAB4_HUMAN DNA-directed RNA polymerases I, II, and II...    30   4.9  
sp|Q3ZBC0|RPAB4_BOVIN DNA-directed RNA polymerases I, II, and II...    30   4.9  
sp|Q06RD2|PSAB_JASNU Photosystem I P700 chlorophyll a apoprotein...    29   6.3  
sp|A1E9S3|PSAB_SORBI Photosystem I P700 chlorophyll a apoprotein...    29   8.3  
sp|Q6ENW4|PSAB_SACOF Photosystem I P700 chlorophyll a apoprotein...    29   8.3  
sp|Q6L399|PSAB_SACHY Photosystem I P700 chlorophyll a apoprotein...    29   8.3  
sp|P04967|PSAB_MAIZE Photosystem I P700 chlorophyll a apoprotein...    29   8.3  

>sp|P48011|RPAB4_SCHPO DNA-directed RNA polymerases I, II, and III
           subunit RPABC4 OS=Schizosaccharomyces pombe GN=rpc10
           PE=2 SV=2
          Length = 63

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -3

Query: 91  GGMA--QPHPEPVSYLCGDCGADNALKPGDVI 2
           GG A   P P  + YLC DCGA N ++  +VI
Sbjct: 8   GGTAFNPPRPATMIYLCADCGARNTIQAKEVI 39


>sp|Q54R66|RPAB4_DICDI DNA-directed RNA polymerases I, II, and III
          subunit rpabc4 OS=Dictyostelium discoideum GN=polr2k
          PE=3 SV=1
          Length = 46

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 64 PVSYLCGDCGADNALKPGDVI 2
          P  Y+CG+CGA++ +KP + +
Sbjct: 2  PCLYICGECGAEHEIKPKEPV 22


>sp|Q63871|RPAB4_MOUSE DNA-directed RNA polymerases I, II, and III
          subunit RPABC4 OS=Mus musculus GN=Polr2k PE=2 SV=2
          Length = 58

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 76 PHPEPVSYLCGDCGADNALKPGDVI 2
          P  +P+ Y+CG+C  +N +K  D I
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPI 34


>sp|P53803|RPAB4_HUMAN DNA-directed RNA polymerases I, II, and III
          subunit RPABC4 OS=Homo sapiens GN=POLR2K PE=2 SV=1
          Length = 58

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 76 PHPEPVSYLCGDCGADNALKPGDVI 2
          P  +P+ Y+CG+C  +N +K  D I
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPI 34


>sp|Q3ZBC0|RPAB4_BOVIN DNA-directed RNA polymerases I, II, and III
          subunit RPABC4 OS=Bos taurus GN=POLR2K PE=3 SV=1
          Length = 58

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 76 PHPEPVSYLCGDCGADNALKPGDVI 2
          P  +P+ Y+CG+C  +N +K  D I
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPI 34


>sp|Q06RD2|PSAB_JASNU Photosystem I P700 chlorophyll a apoprotein A2
           OS=Jasminum nudiflorum GN=psaB PE=3 SV=1
          Length = 734

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 123 PLFNPSTNLWMEEWLNLILNQSHTCVETV 37
           P FN   N+W+  WLN I   S++   T+
Sbjct: 484 PAFNAGRNIWLPGWLNAINENSNSLFLTI 512


>sp|A1E9S3|PSAB_SORBI Photosystem I P700 chlorophyll a apoprotein A2
           OS=Sorghum bicolor GN=psaB PE=3 SV=1
          Length = 734

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 123 PLFNPSTNLWMEEWLNLILNQSHTCVETV 37
           P FN   N+W+  WLN +   S++   T+
Sbjct: 484 PAFNAGRNIWLPGWLNAVNENSNSLFLTI 512


>sp|Q6ENW4|PSAB_SACOF Photosystem I P700 chlorophyll a apoprotein A2
           OS=Saccharum officinarum GN=psaB PE=3 SV=1
          Length = 734

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 123 PLFNPSTNLWMEEWLNLILNQSHTCVETV 37
           P FN   N+W+  WLN +   S++   T+
Sbjct: 484 PAFNAGRNIWLPGWLNAVNENSNSLFLTI 512


>sp|Q6L399|PSAB_SACHY Photosystem I P700 chlorophyll a apoprotein A2
           OS=Saccharum hybrid GN=psaB PE=3 SV=1
          Length = 734

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 123 PLFNPSTNLWMEEWLNLILNQSHTCVETV 37
           P FN   N+W+  WLN +   S++   T+
Sbjct: 484 PAFNAGRNIWLPGWLNAVNENSNSLFLTI 512


>sp|P04967|PSAB_MAIZE Photosystem I P700 chlorophyll a apoprotein A2
           OS=Zea mays GN=psaB PE=3 SV=2
          Length = 735

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 123 PLFNPSTNLWMEEWLNLILNQSHTCVETV 37
           P FN   N+W+  WLN +   S++   T+
Sbjct: 485 PTFNAGRNIWLPGWLNAVNENSNSLFLTI 513
tr_hit_id A9U0K9
Definition tr|A9U0K9|A9U0K9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 32
Score (bit) 62.4
E-value 1.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919401|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_F11.
         (135 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9U0K9|A9U0K9_PHYPA Predicted protein OS=Physcomitrella paten...    62   1e-08
tr|A9NP23|A9NP23_PICSI Putative uncharacterized protein OS=Picea...    53   9e-06
tr|B8AY54|B8AY54_ORYSI Putative uncharacterized protein OS=Oryza...    52   1e-05
tr|B8A9M5|B8A9M5_ORYSI Putative uncharacterized protein OS=Oryza...    52   1e-05
tr|B6T0X3|B6T0X3_MAIZE DNA-directed RNA polymerases I, II, and I...    52   1e-05
tr|B6SPH6|B6SPH6_MAIZE DNA-directed RNA polymerases I, II, and I...    52   1e-05
tr|A7R4J8|A7R4J8_VITVI Chromosome undetermined scaffold_712, who...    52   2e-05
tr|A9NKF0|A9NKF0_PICSI Putative uncharacterized protein OS=Picea...    51   2e-05
tr|Q9FLM8|Q9FLM8_ARATH Similarity to metallothionein-I gene tran...    46   8e-04
tr|B6TU31|B6TU31_MAIZE DNA-directed RNA polymerases I, II, and I...    40   0.044
tr|Q8L449|Q8L449_ORYSJ Putative uncharacterized protein P0617C02...    40   0.075
tr|B8B6J2|B8B6J2_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.075
tr|A8ITN4|A8ITN4_CHLRE Subunit f DNA-directed RNA polymerase OS=...    35   2.4  
tr|Q4N0U1|Q4N0U1_THEPA Transcription activator, putative OS=Thei...    35   2.4  
tr|B6K0B9|B6K0B9_SCHJP DNA-directed RNA polymerase I OS=Schizosa...    35   2.4  
tr|Q01EI8|Q01EI8_OSTTA Rpc10 RPC10 subunit of RNA polymerases I,...    34   3.2  
tr|A4RSR4|A4RSR4_OSTLU RPC10 subunit of RNA polymerases I, II, a...    34   3.2  
tr|Q9C8M4|Q9C8M4_ARATH RNA polymerase II, putative; 28841-29486 ...    33   5.4  
tr|Q4UD38|Q4UD38_THEAN Putative uncharacterized protein OS=Theil...    33   5.4  
tr|B6KNP5|B6KNP5_TOXGO Transcription activator, putative OS=Toxo...    33   5.4  

>tr|A9U0K9|A9U0K9_PHYPA Predicted protein OS=Physcomitrella patens
          subsp. patens GN=PHYPADRAFT_63544 PE=4 SV=1
          Length = 56

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 26/32 (81%), Positives = 28/32 (87%)
 Frame = -3

Query: 97 MDGGMAQPHPEPVSYLCGDCGADNALKPGDVI 2
          MDG M+ P PEPV+YLCGDCGADN LKPGDVI
Sbjct: 1  MDGSMSAPPPEPVTYLCGDCGADNTLKPGDVI 32


>tr|A9NP23|A9NP23_PICSI Putative uncharacterized protein OS=Picea
          sitchensis PE=4 SV=1
          Length = 53

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 24/32 (75%), Positives = 27/32 (84%)
 Frame = -3

Query: 97 MDGGMAQPHPEPVSYLCGDCGADNALKPGDVI 2
          MDG  A   PEPVSY+CGDCGA+N+LKPGDVI
Sbjct: 1  MDGHAA---PEPVSYICGDCGAENSLKPGDVI 29


>tr|B8AY54|B8AY54_ORYSI Putative uncharacterized protein OS=Oryza
          sativa subsp. indica GN=OsI_18488 PE=4 SV=1
          Length = 87

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 22/28 (78%), Positives = 23/28 (82%)
 Frame = -3

Query: 85 MAQPHPEPVSYLCGDCGADNALKPGDVI 2
          M    PEPVSYLCGDCGA+N LKPGDVI
Sbjct: 1  MDPQQPEPVSYLCGDCGAENTLKPGDVI 28


>tr|B8A9M5|B8A9M5_ORYSI Putative uncharacterized protein OS=Oryza
          sativa subsp. indica GN=OsI_02267 PE=4 SV=1
          Length = 52

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 22/28 (78%), Positives = 23/28 (82%)
 Frame = -3

Query: 85 MAQPHPEPVSYLCGDCGADNALKPGDVI 2
          M    PEPVSYLCGDCGA+N LKPGDVI
Sbjct: 1  MDPQQPEPVSYLCGDCGAENTLKPGDVI 28


>tr|B6T0X3|B6T0X3_MAIZE DNA-directed RNA polymerases I, II, and
          III 7.3 kDa polypeptide OS=Zea mays PE=4 SV=1
          Length = 52

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 22/28 (78%), Positives = 23/28 (82%)
 Frame = -3

Query: 85 MAQPHPEPVSYLCGDCGADNALKPGDVI 2
          M    PEPVSYLCGDCGA+N LKPGDVI
Sbjct: 1  MDPQQPEPVSYLCGDCGAENTLKPGDVI 28


>tr|B6SPH6|B6SPH6_MAIZE DNA-directed RNA polymerases I, II, and
          III 7.3 kDa polypeptide OS=Zea mays PE=4 SV=1
          Length = 52

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 22/28 (78%), Positives = 23/28 (82%)
 Frame = -3

Query: 85 MAQPHPEPVSYLCGDCGADNALKPGDVI 2
          M    PEPVSYLCGDCGA+N LKPGDVI
Sbjct: 1  MDPQQPEPVSYLCGDCGAENTLKPGDVI 28


>tr|A7R4J8|A7R4J8_VITVI Chromosome undetermined scaffold_712,
          whole genome shotgun sequence OS=Vitis vinifera
          GN=GSVIVT00004487001 PE=4 SV=1
          Length = 74

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 20/25 (80%), Positives = 22/25 (88%)
 Frame = -3

Query: 76 PHPEPVSYLCGDCGADNALKPGDVI 2
          P PEPVSY+CGDCG +N LKPGDVI
Sbjct: 3  PQPEPVSYICGDCGQENTLKPGDVI 27


>tr|A9NKF0|A9NKF0_PICSI Putative uncharacterized protein OS=Picea
          sitchensis PE=4 SV=1
          Length = 53

 Score = 51.2 bits (121), Expect = 2e-05
 Identities = 20/23 (86%), Positives = 23/23 (100%)
 Frame = -3

Query: 70 PEPVSYLCGDCGADNALKPGDVI 2
          PEPVSY+CGDCGA+N+LKPGDVI
Sbjct: 7  PEPVSYICGDCGAENSLKPGDVI 29


>tr|Q9FLM8|Q9FLM8_ARATH Similarity to metallothionein-I gene
          transcription activator (DNA directed RNA polymerase II
          polypeptide K) (Putative uncharacterized protein
          At5g41010) OS=Arabidopsis thaliana GN=At5g41010 PE=2
          SV=1
          Length = 51

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = -3

Query: 76 PHPEPVSYLCGDCGADNALKPGDVI 2
          P PEPV+Y+CGDCG +N LK GDVI
Sbjct: 3  PAPEPVTYVCGDCGQENTLKSGDVI 27


>tr|B6TU31|B6TU31_MAIZE DNA-directed RNA polymerases I, II, and
          III 7.3 kDa polypeptide OS=Zea mays PE=4 SV=1
          Length = 53

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 15/23 (65%), Positives = 20/23 (86%)
 Frame = -3

Query: 70 PEPVSYLCGDCGADNALKPGDVI 2
          PEPV+Y+CGDCGA+N +K  DV+
Sbjct: 7  PEPVTYVCGDCGAENTVKLVDVV 29