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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919402
Clone id YMU001_000124_F12
Library
Length 463
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000124_F12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAATCAAGGCCAGGCACACACTTGACTTTGATCTATAGCATACAATGCCCATTTTGCCAT
TCCAAAGGCCTCTTGACTGCTCAAAGAGCAGGGCGACTTTTGAAGCCAGTAGTTGCAAGA
AAAGAAAATTTCAACAAGCTCAAGTATTCTGAACTACAGGCATGCATGCTGCAATTACAT
AGCTGATGTATGTTTCCGGCAGTTTGACTGCTTGCCCTCACATTAACAAATCTCGCAATA
AAACTGACAATGATGAAAAACAAAACAAATTTGCATCCAACGGGAGTTCACAACTTAGTG
TCAGCTCTGCCCCTTCTTCGTAACTTTCTCATTGAATTATCATAAATGAACAGCCTCCAG
GAGTAAAACAGACTTCTCAGCACCAAATTGGACACATAATGTCACCATTGTTAGCATGCA
CTATTCACCCAAAACAACGATCAGCCTTCCTCATGTAGAAACA
■■Homology search results ■■ -
sp_hit_id Q7YKM5
Definition sp|Q7YKM5|MATK_PROLU Maturase K OS=Proboscidea lousianica
Align length 118
Score (bit) 33.1
E-value 0.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919402|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_F12.
         (463 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7YKM5|MATK_PROLU Maturase K OS=Proboscidea lousianica GN=mat...    33   0.60 
sp|Q9TIR9|MATK_KIGAF Maturase K OS=Kigelia africana GN=matK PE=3...    32   1.8  
sp|Q7YJZ1|MATK_HARGR Maturase K OS=Harpagophyton granidieri GN=m...    31   2.3  
sp|Q7YKQ5|MATK_CAMRA Maturase K OS=Campsis radicans GN=matK PE=3...    31   3.0  
sp|Q9TIQ5|MATK_VERTH Maturase K OS=Verbascum thapsus GN=matK PE=...    30   3.9  
sp|Q8M930|MATK_PAUTO Maturase K OS=Paulownia tomentosa GN=matK P...    30   3.9  
sp|Q6EIJ9|MATK_FRECA Maturase K OS=Fremontodendron californicum ...    30   3.9  
sp|Q7YKQ3|MATK_GRAOF Maturase K OS=Gratiola officinalis GN=matK ...    30   5.1  
sp|Q6EIK1|MATK_PENDO Maturase K OS=Pentaplaris doroteae GN=matK ...    30   6.7  
sp|Q54G02|SPXS5_DICDI SPX and EXS domain-containing protein 5 OS...    29   8.5  
sp|Q6EIH3|MATK_TILAM Maturase K OS=Tilia americana GN=matK PE=3 ...    29   8.7  
sp|Q6EIG9|MATK_THECC Maturase K OS=Theobroma cacao GN=matK PE=3 ...    29   8.7  
sp|Q5GAB0|MATK_OTACA Maturase K OS=Otacanthus caeruleus GN=matK ...    29   8.7  

>sp|Q7YKM5|MATK_PROLU Maturase K OS=Proboscidea lousianica GN=matK
           PE=3 SV=1
          Length = 500

 Score = 33.1 bits (74), Expect = 0.60
 Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 17/118 (14%)
 Frame = -2

Query: 336 FNEKVT-KKGQS*H*VVNSRWMQICFVFHHCQFYCEIC*CEGKQSNCRKHTSAM*LQHAC 160
           +N  +T KK  S    +N R     +  H C++         + S+ R  +S + L+   
Sbjct: 177 WNSLITPKKASSSFSKINQRLFLFLYNSHVCEYESIFVFLRNQSSHLRSTSSGVLLERIY 236

Query: 159 L*FRILELVEIF-----FSCNYWLQKSPCS-----------LSSQEAFGMAKWALYAI 34
              +I  LV +F     F  N WL K PC             S   +  M KW  Y +
Sbjct: 237 FYGKIEHLVNVFVTVKDFQANLWLVKEPCMHYIRYQRKSILASKGTSLFMNKWKCYLV 294


>sp|Q9TIR9|MATK_KIGAF Maturase K OS=Kigelia africana GN=matK PE=3
           SV=1
          Length = 509

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 17/118 (14%)
 Frame = -2

Query: 336 FNEKVT-KKGQS*H*VVNSRWMQICFVFHHCQFYCEIC*CEGKQSNCRKHTSAM*LQHAC 160
           +N  +T KKG S     N R     +  H C++         + S+ R  +S + L+   
Sbjct: 186 WNSLITPKKGSSSFSKRNQRLFLFLYNSHVCEYESIFVFLRNQSSHLRSTSSGVLLERIY 245

Query: 159 L*FRILELVEIF-----FSCNYWLQKSPCS-----------LSSQEAFGMAKWALYAI 34
              +I  LV +F     F  N W  K PC             S   +  M KW  Y +
Sbjct: 246 FYEKIERLVNVFVKVKDFQANLWFVKEPCMHYIRYQRKSILASKGTSLFMNKWKCYLV 303


>sp|Q7YJZ1|MATK_HARGR Maturase K OS=Harpagophyton granidieri GN=matK
           PE=3 SV=1
          Length = 506

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 17/118 (14%)
 Frame = -2

Query: 336 FNEKVT-KKGQS*H*VVNSRWMQICFVFHHCQFYCEIC*CEGKQSNCRKHTSAM*LQHAC 160
           +N  +T KK  S     N R     +  H C++         + S+ R  +S + L+   
Sbjct: 186 WNSLITPKKASSSFSKRNQRLFLFLYNSHVCEYEAIFVFLRNQSSHLRSTSSGVLLERIY 245

Query: 159 L*FRILELVEIF-----FSCNYWLQKSPCS-----------LSSQEAFGMAKWALYAI 34
              +I  LV +F     F  N WL K PC             S   +  M KW  Y +
Sbjct: 246 FYGKIERLVNVFVKVKDFQANLWLVKEPCMHYIRYQRKSILASKGTSLFMNKWKCYLV 303


>sp|Q7YKQ5|MATK_CAMRA Maturase K OS=Campsis radicans GN=matK PE=3
           SV=1
          Length = 511

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 16/101 (15%)
 Frame = -2

Query: 288 NSRWMQICFVFHHCQFYCEIC*CEGKQSNCRKHTSAM*LQHACL*FRILELVEIF----- 124
           N R     +  H C++         + S+ R  +S + L+      +I  LV +F     
Sbjct: 205 NQRLFLFLYNSHVCEYESVFVFLRNQSSHLRSTSSGVLLERIYFYGKIESLVNVFGKVKD 264

Query: 123 FSCNYWLQKSPCS-----------LSSQEAFGMAKWALYAI 34
           F  N WL K PC             S   +  M KW  Y +
Sbjct: 265 FQANLWLVKEPCMHYIRYQRKSLLASKGTSLFMNKWKCYLV 305


>sp|Q9TIQ5|MATK_VERTH Maturase K OS=Verbascum thapsus GN=matK PE=3
           SV=1
          Length = 509

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
 Frame = -2

Query: 336 FNEKVT-KKGQS*H*VVNSRWMQICFVFHHCQFYCEIC*CEGKQSNCRKHTSAM*LQHAC 160
           +N  +T KK  S     N R     + +H C++         + S+ R  +S + L+   
Sbjct: 189 WNRLITPKKASSSFSKRNQRLFLFLYNYHVCEYESIFVFLRNQSSHLRSTSSGVFLERIY 248

Query: 159 L*FRILELVEIF-----FSCNYWLQKSPC 88
              ++  LV +F     F  N WL K PC
Sbjct: 249 FYGKVERLVNVFGKVKDFQENLWLVKEPC 277


>sp|Q8M930|MATK_PAUTO Maturase K OS=Paulownia tomentosa GN=matK PE=3
           SV=1
          Length = 511

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 29/118 (24%), Positives = 42/118 (35%), Gaps = 17/118 (14%)
 Frame = -2

Query: 336 FNEKVT-KKGQS*H*VVNSRWMQICFVFHHCQFYCEIC*CEGKQSNCRKHTSAM*LQHAC 160
           +N  +T KK  S     N R     +  H C++         + S+ R   S +  +   
Sbjct: 188 WNSLITPKKASSSFSKRNQRLFLFLYNSHVCEYESIFVFLRNQSSHLRSTFSGILFERIY 247

Query: 159 L*FRILELVEIF-----FSCNYWLQKSPCS-----------LSSQEAFGMAKWALYAI 34
              +I  LV +F     F  N WL K PC             S   +F M KW  Y +
Sbjct: 248 FYGKIERLVNVFVKVKDFQANLWLVKEPCMHYIRYQRKSILASKGTSFFMNKWKCYLV 305


>sp|Q6EIJ9|MATK_FRECA Maturase K OS=Fremontodendron californicum
           GN=matK PE=3 SV=1
          Length = 502

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 14/102 (13%)
 Frame = -2

Query: 294 VVNSRWMQICFVFHHCQFYCEIC*CEGKQSNCRKHTSAM*LQHACL*FRILELVEIF--- 124
           ++N R     +  H C++         + S+ R  +S + L+      +I  LVE+F   
Sbjct: 199 ILNPRLFLFLYNSHACEYESIFLFLRNQSSHLRSTSSGVFLERIFFYGKIEYLVEVFYND 258

Query: 123 FSCNYWLQKSP-----------CSLSSQEAFGMAKWALYAID 31
           F  N WL K P              S   +  M KW  Y +D
Sbjct: 259 FQNNLWLFKDPFIHFIRYQGKAILASKDTSLLMNKWKYYFVD 300


>sp|Q7YKQ3|MATK_GRAOF Maturase K OS=Gratiola officinalis GN=matK
           PE=3 SV=1
          Length = 510

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
 Frame = -2

Query: 288 NSRWMQICFVFHHCQFYCEIC*CEGKQSNCRKHTSAM*LQHACL*FRILELVEIF----- 124
           N R     +  H C++   +     + S+ R  +S + L+      +I  LV +F     
Sbjct: 204 NKRLFLFLYNSHVCEYESILVFLRKQSSHLRSTSSGLLLERIYFYAKIERLVNLFVKVKG 263

Query: 123 FSCNYWLQKSPC 88
           F  N WL K PC
Sbjct: 264 FQVNLWLVKEPC 275


>sp|Q6EIK1|MATK_PENDO Maturase K OS=Pentaplaris doroteae GN=matK
           PE=3 SV=1
          Length = 504

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 14/102 (13%)
 Frame = -2

Query: 294 VVNSRWMQICFVFHHCQFYCEIC*CEGKQSNCRKHTSAM*LQHACL*FRILELVEIF--- 124
           + N R     +  H C++         + S+ R  +S + L+      +I  LVE+F   
Sbjct: 199 IFNPRLFLFLYNSHACEYESIFLFLRNQSSHLRSTSSGVFLERIYFYGKIEYLVEVFYND 258

Query: 123 FSCNYWLQKSP-----------CSLSSQEAFGMAKWALYAID 31
           F  N WL K P              S   +  M KW  Y +D
Sbjct: 259 FQNNLWLFKDPFIHFIRYQGKAILASKDTSLLMNKWKYYFVD 300


>sp|Q54G02|SPXS5_DICDI SPX and EXS domain-containing protein 5
           OS=Dictyostelium discoideum GN=DDB_G0290647 PE=4 SV=2
          Length = 927

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 17/74 (22%), Positives = 31/74 (41%)
 Frame = +3

Query: 219 HINKSRNKTDNDEKQNKFASNGXXXXXXXXXXXXXXXH*IIINEQPPGVKQTSQHQIGHI 398
           H +K +NK +N+   N   +N                H      Q P +K+ +QH     
Sbjct: 200 HYSKKKNKLNNNNNNNNNNNNNNNNTTSPPPLSHDQQH-----LQQPEIKRINQHHAVLN 254

Query: 399 MSPLLACTIHPKQR 440
           ++P+ +  + PKQ+
Sbjct: 255 LTPIKSTPLSPKQQ 268
tr_hit_id Q9TIS7
Definition tr|Q9TIS7|Q9TIS7_9LAMI Maturase K (Fragment) OS=Boschniakia strobilacea
Align length 101
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919402|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_F12.
         (463 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9TIS7|Q9TIS7_9LAMI Maturase K (Fragment) OS=Boschniakia stro...    33   5.4  
tr|Q5GAB1|Q5GAB1_9LAMI Maturase K OS=Bacopa monnieri GN=matK PE=...    33   5.4  
tr|B0I1Q3|B0I1Q3_9LAMI Maturase K OS=Vitex canescens GN=matK PE=...    33   5.4  
tr|Q8M968|Q8M968_9LAMI Maturase K OS=Proboscidea fragrans GN=mat...    33   7.0  
tr|Q8SM18|Q8SM18_9LAMI Maturase K OS=Russelia equisetiformis GN=...    33   9.1  

>tr|Q9TIS7|Q9TIS7_9LAMI Maturase K (Fragment) OS=Boschniakia
           strobilacea GN=matK PE=3 SV=1
          Length = 402

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 16/101 (15%)
 Frame = -2

Query: 288 NSRWMQICFVFHHCQFYCEIC*CEGKQSNCRKHTSAM*LQHACL*FRILELVEIF----- 124
           N R +   + +H C++   +     + S+ R   S + L+      +I  LV +F     
Sbjct: 113 NQRLLLFLYNYHVCEYESILVFLRNQSSHLRSTPSGVLLERIYFCGKIERLVNVFVKVKD 172

Query: 123 FSCNYWLQKSPC-----------SLSSQEAFGMAKWALYAI 34
           F  N WL K PC             S   +  M KW  Y I
Sbjct: 173 FQANLWLVKEPCIHYIRYRRKSILASKXTSLFMNKWKCYLI 213


>tr|Q5GAB1|Q5GAB1_9LAMI Maturase K OS=Bacopa monnieri GN=matK PE=3
           SV=1
          Length = 511

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 18/111 (16%)
 Frame = -2

Query: 288 NSRWMQICFVFHHCQFYCEIC*CEGKQSNCRKHTSAM*LQHACL*FRILELVEIF----- 124
           N R+    + +H C++         +  + R  +S + L+      +I  LV +F     
Sbjct: 205 NPRFFLFLYNYHVCEYESIFVFLRAQSYHLRSISSRLLLERIYFYAKIERLVNLFIKVKH 264

Query: 123 FSCNYWLQKSPCSL-----------SSQEAFGMAKWALY--AIDQSQVCAW 10
           F  N WL K PC L           S   +F + KW  Y  A  QS    W
Sbjct: 265 FQVNLWLVKEPCMLYVRYQKKLILASKGTSFLLKKWKSYLVAFWQSHFLMW 315


>tr|B0I1Q3|B0I1Q3_9LAMI Maturase K OS=Vitex canescens GN=matK PE=3
           SV=1
          Length = 503

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = -2

Query: 288 NSRWMQICFVFHHCQFYCEIC*CEGKQSNCRKHTSAM*LQHACL*FRILELVEIFFSCNY 109
           N R +   +  H C++         +  + R  +S + L+      +I  LV +FF  N 
Sbjct: 202 NQRLVLFLYNSHVCEYESIFVFLRNQSFHLRSTSSGVLLERIYFYVKIERLVNVFFWSNL 261

Query: 108 WLQKSPC 88
           WL K PC
Sbjct: 262 WLVKEPC 268


>tr|Q8M968|Q8M968_9LAMI Maturase K OS=Proboscidea fragrans GN=matK
           PE=3 SV=1
          Length = 428

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 17/118 (14%)
 Frame = -2

Query: 336 FNEKVT-KKGQS*H*VVNSRWMQICFVFHHCQFYCEIC*CEGKQSNCRKHTSAM*LQHAC 160
           +N  +T KK  S    +N R     +  H C++         + S+ R  +S + L+   
Sbjct: 186 WNSLITPKKASSSFSKINQRLFLFLYNSHVCEYESIFVFLRNQSSHLRSTSSGVLLERIY 245

Query: 159 L*FRILELVEIF-----FSCNYWLQKSPCS-----------LSSQEAFGMAKWALYAI 34
              +I  LV +F     F  N WL K PC             S   +  M KW  Y +
Sbjct: 246 FYGKIEHLVNVFVTVKDFQANLWLVKEPCMHYIRYQRKSILASKGTSLFMNKWKCYLV 303


>tr|Q8SM18|Q8SM18_9LAMI Maturase K OS=Russelia equisetiformis
           GN=matK PE=3 SV=1
          Length = 509

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
 Frame = -2

Query: 336 FNEKVT-KKGQS*H*VVNSRWMQICFVFHHCQFYCEIC*CEGKQSNCRKHTSAM*LQHAC 160
           +N  +T KK  S    +N R     +  H C++         + S+ R  +S + L+   
Sbjct: 189 WNSLITPKKASSSFSKINQRLFLFLYNSHVCEYESIFVFLRNQSSHLRSTSSGVLLERIY 248

Query: 159 L*FRILELVEIF-----FSCNYWLQKSPC 88
              +I  LV +F     F  N WL K PC
Sbjct: 249 FYGKIERLVNVFVKVKDFQANLWLVKEPC 277