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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919403
Clone id YMU001_000124_G01
Library
Length 499
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000124_G01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAGTGCACTTAGCCGCCCCACGTCTCCGCCTTTATCGATCACTCTTTCTGCTAGATGCAT
CGCATGACAGGCACCGAAAAGGCCAACCCTGACAACCACTCGACCCCATCCTCGGCCATG
CAAATTGGGCAACGTTGTCTCATTTTCCAGGTAGCTATTATTTGCAGGCCAACTTTGAAC
AACAGCCGCCCCTCCCACTCAAGACAGTCGCATGCATCACCCACAAACCGCCTGCTCCCG
TTCTCTATCACCCAGACTAGCCGTCATGCCTTTTCGTTACAGCCAGTTGCAGGCAATTTC
AACTCCCAATCCTTGGTGGACTCTTCATCTGTACTTCTTTTGCGTGTGCCGCTCGTGCAC
AGTCCTCACATTCACTTTTGCACGCAGTTGTTGGCAGTTTTTTCTCTCTATCTCACATTA
TCGCTATCTCTCTCTGGCCGCCAGTCACTAGCTTCAGTACAACTGCATACCAACACTCAG
AGAGGTACACCAGTCCTCC
■■Homology search results ■■ -
sp_hit_id Q5LTJ1
Definition sp|Q5LTJ1|COBT_SILPO Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase OS=Silicibacter pomeroyi
Align length 38
Score (bit) 33.1
E-value 0.73
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919403|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_G01.
         (499 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5LTJ1|COBT_SILPO Nicotinate-nucleotide--dimethylbenzimidazol...    33   0.73 
sp|A2ARV4|LRP2_MOUSE Low-density lipoprotein receptor-related pr...    32   1.6  
sp|A1CZE5|INO80_NEOFI Putative DNA helicase ino80 OS=Neosartorya...    32   1.6  
sp|P98158|LRP2_RAT Low-density lipoprotein receptor-related prot...    31   3.6  
sp|P34489|FOZI1_CAEEL Formin-homology and zinc finger domains pr...    30   4.8  
sp|Q2KUK2|PANC_BORA1 Pantothenate synthetase OS=Bordetella avium...    30   8.0  

>sp|Q5LTJ1|COBT_SILPO Nicotinate-nucleotide--dimethylbenzimidazole
           phosphoribosyltransferase OS=Silicibacter pomeroyi
           GN=cobT PE=3 SV=1
          Length = 336

 Score = 33.1 bits (74), Expect = 0.73
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +3

Query: 282 ASCRQFQLPILGGLFICTSFACAARAQSSHSLLHAVVG 395
           A+ RQ ++P++   FICT+ A A  A ++++L H V G
Sbjct: 238 AAARQLRIPVILDGFICTAAAAALAAVAANALDHTVAG 275


>sp|A2ARV4|LRP2_MOUSE Low-density lipoprotein receptor-related protein
            2 OS=Mus musculus GN=Lrp2 PE=1 SV=1
          Length = 4660

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 22/66 (33%), Positives = 31/66 (46%)
 Frame = +3

Query: 285  SCRQFQLPILGGLFICTSFACAARAQSSHSLLHAVVGSFFSLSHIIAISLWPPVTSFSTT 464
            +C+Q  LP+ GG+F C   ACA+  + S         S    +  I +S+ P V  FS  
Sbjct: 2029 ACQQICLPVPGGMFSC---ACASGFKLSPD-----GRSCSPYNSFIVVSMLPAVRGFSLE 2080

Query: 465  AYQHSE 482
               HSE
Sbjct: 2081 LSDHSE 2086


>sp|A1CZE5|INO80_NEOFI Putative DNA helicase ino80 OS=Neosartorya
           fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181)
           GN=ino80 PE=3 SV=1
          Length = 1708

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
 Frame = +1

Query: 88  PDNHSTPSSAMQIGQRCLIFQVAIICRP------TLNNSRP-SHSRQSHASPTNRLLPFS 246
           P +HS PSS  Q        Q ++  RP      + N + P +HS  SHA P+ RL   S
Sbjct: 81  PGHHSEPSSQYQAHSSAGTPQFSLP-RPYSASMMSSNGASPYNHSTSSHAHPSARLESLS 139

Query: 247 ITQTSRHAFSLQPVAGN 297
            +   +    L P+ GN
Sbjct: 140 QSPPKKETEPLYPIGGN 156


>sp|P98158|LRP2_RAT Low-density lipoprotein receptor-related protein 2
            OS=Rattus norvegicus GN=Lrp2 PE=1 SV=1
          Length = 4660

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = +3

Query: 285  SCRQFQLPILGGLFICTSFACAARAQSSHSLLHAVVGSFFSLSHIIAISLWPPVTSFSTT 464
            +C+Q  LP+ GG+F C   ACA+  + S         S    +  + +S+ P V  FS  
Sbjct: 2029 ACQQICLPVPGGMFSC---ACASGFKLSPD-----GRSCSPYNSFMVVSMLPAVRGFSLE 2080

Query: 465  AYQHSE 482
               HSE
Sbjct: 2081 LSDHSE 2086


>sp|P34489|FOZI1_CAEEL Formin-homology and zinc finger domains
           protein 1 OS=Caenorhabditis elegans GN=fozi-1 PE=1 SV=1
          Length = 732

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
 Frame = +1

Query: 76  EKANPDNHSTPSSAMQIGQRCLIFQVAIICRPTLNNSR-PSHSRQSHASPTNRLLP---- 240
           +  NP    + SS  +    C  FQ  +IC+  +++S+ P H RQ H +      P    
Sbjct: 126 QNQNPSQSQSSSSDRKRSYPCT-FQYCVICQKDVHSSKLPCHIRQCHVAKPMFQCPACDF 184

Query: 241 ---FSITQTSRHAFSLQPVAGN 297
              +S      H  SL  +AG+
Sbjct: 185 TSTYSKNNVKSHMVSLHGLAGD 206


>sp|Q2KUK2|PANC_BORA1 Pantothenate synthetase OS=Bordetella avium
           (strain 197N) GN=panC PE=3 SV=1
          Length = 280

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 198 LKTVACITHKPPAPVLYHPD*PSCLFVTASCRQFQLPI 311
           LK ++C+  +P   V    D    + V A CRQFQLP+
Sbjct: 131 LKLLSCV--QPRVAVFGKKDYQQLMIVRAMCRQFQLPV 166
tr_hit_id Q4Q6G5
Definition tr|Q4Q6G5|Q4Q6G5_LEIMA Putative uncharacterized protein OS=Leishmania major
Align length 73
Score (bit) 34.7
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919403|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_G01.
         (499 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4Q6G5|Q4Q6G5_LEIMA Putative uncharacterized protein OS=Leish...    35   2.6  
tr|Q4RLM0|Q4RLM0_TETNG Chromosome 10 SCAF15019, whole genome sho...    34   4.4  
tr|A7E291|A7E291_DANRE LOC569471 protein (Fragment) OS=Danio rer...    33   5.7  
tr|Q2UG92|Q2UG92_ASPOR DNA mismatch repair protein - MLH3 family...    33   5.7  
tr|B4SM45|B4SM45_STRM5 Electron transport protein SCO1/SenC OS=S...    33   7.5  
tr|Q59VK9|Q59VK9_CANAL Putative uncharacterized protein OS=Candi...    33   9.7  
tr|Q59VH2|Q59VH2_CANAL Putative uncharacterized protein OS=Candi...    33   9.7  
tr|B0DWL1|B0DWL1_LACBS Predicted protein OS=Laccaria bicolor (st...    33   9.8  

>tr|Q4Q6G5|Q4Q6G5_LEIMA Putative uncharacterized protein
           OS=Leishmania major GN=LmjF31.0980 PE=4 SV=1
          Length = 769

 Score = 34.7 bits (78), Expect = 2.6
 Identities = 22/73 (30%), Positives = 39/73 (53%)
 Frame = +1

Query: 13  PPHVSAFIDHSFC*MHRMTGTEKANPDNHSTPSSAMQIGQRCLIFQVAIICRPTLNNSRP 192
           PPH ++ +D     + R  GT  A  D  S+P+S + +  R ++ ++  I R  L +S P
Sbjct: 47  PPHGTSPVDDYSVLLARRIGTMVARLDELSSPTSQVILTPRMMLCELMDIVRQALYDSLP 106

Query: 193 SHSRQSHASPTNR 231
           +     +ASPT++
Sbjct: 107 AD--MQNASPTDK 117


>tr|Q4RLM0|Q4RLM0_TETNG Chromosome 10 SCAF15019, whole genome
           shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00032430001 PE=4 SV=1
          Length = 1230

 Score = 33.9 bits (76), Expect = 4.4
 Identities = 19/84 (22%), Positives = 34/84 (40%)
 Frame = -3

Query: 308 WELKLPATGCNEKA*RLVWVIENGSRRFVGDACDCLEWEGRLLFKVGLQIIATWKMRQRC 129
           WE+ + +   +++   L    E G+R  +G  CD L W G    ++ +     W  R  C
Sbjct: 309 WEMSIFSAAGDDQRCGLGRCSEQGARWSLGGGCDKLSWTGEAFNRISM-----WSRRSHC 363

Query: 128 PICMAEDGVEWLSGLAFSVPVMRC 57
            +   + G  W      S  + +C
Sbjct: 364 -VIRHQSGARWTRFNRISEVLQKC 386


>tr|A7E291|A7E291_DANRE LOC569471 protein (Fragment) OS=Danio rerio
           GN=LOC569471 PE=2 SV=1
          Length = 654

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +2

Query: 182 TAAPPTQDSRMHHPQTACSRSLSPRLAVMPFRYSQLQAISTP 307
           T  P  QD R+H  Q  C +   P L   PF+  QLQ + TP
Sbjct: 531 TEPPGPQDQRLHAQQAQCQQLQKPPL---PFQQQQLQQVHTP 569


>tr|Q2UG92|Q2UG92_ASPOR DNA mismatch repair protein - MLH3 family
           OS=Aspergillus oryzae GN=AO090023000933 PE=4 SV=1
          Length = 929

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +3

Query: 360 QSSHSLLHAVVGSFFSLSHIIAISLWPPVTSFSTTAYQHSERYTS 494
           +SS SL +A V   FSLS     S+ P +++  T++ +H +RY S
Sbjct: 292 KSSVSLFYAEVNRLFSLSDFGTTSITPSISARGTSSAEHPDRYGS 336


>tr|B4SM45|B4SM45_STRM5 Electron transport protein SCO1/SenC
           OS=Stenotrophomonas maltophilia (strain R551-3)
           GN=Smal_3791 PE=4 SV=1
          Length = 264

 Score = 33.1 bits (74), Expect = 7.5
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 186 PPLPLKTVACITHKPPAPVLYHP-D*PSCLFVTASCRQFQLPILGGLFICTSFACAARAQ 362
           PP      A +T  PPAP L  P   P+ +  +    +F+LP+L GL I     C+A+++
Sbjct: 9   PPSSFPPRAGLTETPPAPALVVPVKRPAAVVRSLFSPRFRLPLLAGLAIGLLAGCSAQSR 68


>tr|Q59VK9|Q59VK9_CANAL Putative uncharacterized protein OS=Candida
           albicans GN=TCO89 PE=4 SV=1
          Length = 701

 Score = 32.7 bits (73), Expect = 9.7
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +2

Query: 179 TTAAPPTQDSRMHHPQTACSRSLSPRLAVMPFRYSQLQAISTPN 310
           ++AA PTQ +  HHP     RS++PRLA     Y+  +    PN
Sbjct: 645 SSAARPTQPATQHHPTN--QRSINPRLASYNQNYNNSRQNQAPN 686


>tr|Q59VH2|Q59VH2_CANAL Putative uncharacterized protein OS=Candida
           albicans GN=TCO89 PE=4 SV=1
          Length = 708

 Score = 32.7 bits (73), Expect = 9.7
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +2

Query: 179 TTAAPPTQDSRMHHPQTACSRSLSPRLAVMPFRYSQLQAISTPN 310
           ++AA PTQ +  HHP     RS++PRLA     Y+  +    PN
Sbjct: 652 SSAARPTQPATQHHPTN--QRSINPRLASYNQNYNNSRQNQAPN 693


>tr|B0DWL1|B0DWL1_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_333682 PE=4 SV=1
          Length = 171

 Score = 32.7 bits (73), Expect = 9.8
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
 Frame = +3

Query: 141 HFPGSYYLQANFEQQP-----PLPLKTVACITHKPPAPVLYHPD*PSCLFVTAS 287
           H P  + L  +    P     PLPL  +AC+   PP+ + Y+P  P  L  T S
Sbjct: 95  HLPFPHSLPHSLTPSPLPHCTPLPLSLIACLYPFPPSLIAYNPFPPPSLLTTLS 148