BP919409 |
Clone id |
YMU001_000124_G07 |
Library |
YMU01 |
Length |
360 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000124_G07. |
Accession |
BP919409 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
GTGGGCAGGGTTCCTTCCATCAGCTTCTTTTTCATCGGGCAAGGGTTGTTTTGGTACCTC CAGGCTTACAATTGAATACGTTGTCAATACAACATCATGCTTGGCAAGCTCGTGAGGGTC CCGTGTCCTTCCACTCCCATGATATAAATGCACAGATAATGCCGCTTCCGCTGATATCTA TACCTTCAACTCATGTGCCCACTGTCTAAGGACACTTGTTGGACAAACAACTAAAGTGCC AGTAGAAGGTCTGCCTTTTGAACCTGTAATAACATTGCTCAAGAGTCCTTGTTCTGACTG GCAGCCCACCTTCAGATGCCCAGTGGCAATAGGATGACAATCATCATCTTCCAGATCTAC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5NC05 |
Definition |
sp|Q5NC05|TTF2_MOUSE Transcription termination factor 2 OS=Mus musculus |
Align length |
79 |
Score (bit) |
63.5 |
E-value |
3.0e-10 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SXB1 |
Definition |
tr|A9SXB1|A9SXB1_PHYPA SNF2 family DNA-dependent ATPase OS=Physcomitrella patens subsp. patens |
Align length |
108 |
Score (bit) |
125.0 |
E-value |
1.0e-27 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919409|Adiantum capillus-veneris mRNA, clone: YMU001_000124_G07. (360 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SXB1|A9SXB1_PHYPA SNF2 family DNA-dependent ATPase OS=Physc... 125 1e-27 tr|A5AIW5|A5AIW5_VITVI Putative uncharacterized protein OS=Vitis... 118 2e-25 tr|Q5ZCG5|Q5ZCG5_ORYSJ cDNA clone:J013116F16, full insert sequen... 117 4e-25 tr|Q5ZCG4|Q5ZCG4_ORYSJ Putative ATPase OS=Oryza sativa subsp. ja... 117 4e-25 tr|O22731|O22731_ARATH F11P17.13 protein OS=Arabidopsis thaliana... 117 4e-25 tr|B8AAE9|B8AAE9_ORYSI Putative uncharacterized protein OS=Oryza... 117 4e-25 tr|B3H7J3|B3H7J3_ARATH Uncharacterized protein At1g61140.3 OS=Ar... 117 4e-25 tr|B3H7C1|B3H7C1_ARATH Uncharacterized protein At1g61140.2 OS=Ar... 117 4e-25 tr|A2ZYF1|A2ZYF1_ORYSJ Putative uncharacterized protein OS=Oryza... 117 4e-25 tr|A9RE31|A9RE31_PHYPA Predicted protein (Fragment) OS=Physcomit... 115 8e-25 tr|Q9SX56|Q9SX56_ARATH F14I3.1 protein (Fragment) OS=Arabidopsis... 109 8e-23 tr|Q9LPR7|Q9LPR7_ARATH F11F12.23 protein OS=Arabidopsis thaliana... 109 8e-23 tr|Q94BR5|Q94BR5_ARATH Putative DNA-binding protein OS=Arabidops... 109 8e-23 tr|A7QNM4|A7QNM4_VITVI Chromosome undetermined scaffold_133, who... 108 1e-22 tr|Q9LHE4|Q9LHE4_ARATH Transcription factor-like protein OS=Arab... 100 3e-20 tr|O04082|O04082_ARATH Transcription factor RUSH-1alpha isolog; ... 98 2e-19 tr|Q6Z9U5|Q6Z9U5_ORYSJ Os08g0180300 protein OS=Oryza sativa subs... 98 2e-19 tr|B8BBD4|B8BBD4_ORYSI Putative uncharacterized protein OS=Oryza... 98 2e-19 tr|A7R7L6|A7R7L6_VITVI Chromosome undetermined scaffold_1859, wh... 98 2e-19 tr|A7R4B9|A7R4B9_VITVI Chromosome undetermined scaffold_645, who... 98 2e-19 tr|A7R3I3|A7R3I3_VITVI Chromosome undetermined scaffold_525, who... 98 2e-19 tr|A3BQ85|A3BQ85_ORYSJ Putative uncharacterized protein OS=Oryza... 98 2e-19 tr|Q7XN68|Q7XN68_ORYSA OSJNBa0089N06.14 protein OS=Oryza sativa ... 93 6e-18 tr|Q0J9V7|Q0J9V7_ORYSJ Os04g0629300 protein OS=Oryza sativa subs... 93 6e-18 tr|A2XXW3|A2XXW3_ORYSI Putative uncharacterized protein OS=Oryza... 93 6e-18 tr|Q25A47|Q25A47_ORYSA H0323C08.5 protein (H0303G06.18 protein) ... 92 1e-17 tr|Q9LUS4|Q9LUS4_ARATH Similarity to transcription factors OS=Ar... 89 8e-17 tr|A8PSM5|A8PSM5_MALGO Putative uncharacterized protein OS=Malas... 69 9e-11 tr|Q4RTN8|Q4RTN8_TETNG Chromosome 2 SCAF14997, whole genome shot... 67 3e-10 tr|Q176J2|Q176J2_AEDAE Helicase OS=Aedes aegypti GN=AAEL006331 P... 66 8e-10
>tr|A9SXB1|A9SXB1_PHYPA SNF2 family DNA-dependent ATPase OS=Physcomitrella patens subsp. patens GN=CHR1528 PE=4 SV=1 Length = 1385
Score = 125 bits (313), Expect = 1e-27 Identities = 63/108 (58%), Positives = 80/108 (74%) Frame = -1
Query: 327 ATGHLKVGCQSEQGLLSNVITGSKGRPSTGTLVVCPTSVLRQWAHELKV*ISAEAALSVH 148 A+ ++ G Q +Q + SKGRP+ GTLVVCPTSVLRQWA E++ +S +A +SV Sbjct: 709 ASALIENGNQLQQDEPKSSQPSSKGRPAAGTLVVCPTSVLRQWAQEIRDKVSIKADVSVL 768
Query: 147 LYHGSGRTRDPHELAKHDVVLTTYSIVSLEVPKQPLPDEKEADGRNPA 4 +YHGS R +DPHE+AK DVVL+TYSIVS+EVPKQ LP+EKE D R A Sbjct: 769 VYHGSNRIKDPHEIAKFDVVLSTYSIVSMEVPKQALPEEKEVDNRRSA 816
>tr|A5AIW5|A5AIW5_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020421 PE=4 SV=1 Length = 1435
Score = 118 bits (295), Expect = 2e-25 Identities = 57/90 (63%), Positives = 71/90 (78%) Frame = -1
Query: 276 NVITGSKGRPSTGTLVVCPTSVLRQWAHELKV*ISAEAALSVHLYHGSGRTRDPHELAKH 97 N KGRP+ GTLVVCPTSVLRQWA EL+ ++++A LSV +YHGS RT+DP ELA++ Sbjct: 747 NAFVQGKGRPAAGTLVVCPTSVLRQWAEELRSKVTSKANLSVLVYHGSNRTKDPCELARY 806
Query: 96 DVVLTTYSIVSLEVPKQPLPDEKEADGRNP 7 DVVLTTYSIVS+EVPKQPL D+ + + P Sbjct: 807 DVVLTTYSIVSMEVPKQPLVDKDDEEKVKP 836
>tr|Q5ZCG5|Q5ZCG5_ORYSJ cDNA clone:J013116F16, full insert sequence OS=Oryza sativa subsp. japonica GN=P0010B10.13-1 PE=2 SV=1 Length = 1213
Score = 117 bits (292), Expect = 4e-25 Identities = 64/125 (51%), Positives = 81/125 (64%), Gaps = 8/125 (6%) Frame = -1
Query: 357 DLEDDDCHPI----ATGHLKVGCQSEQGLLS----NVITGSKGRPSTGTLVVCPTSVLRQ 202 D EDDD P A HL C+ E + N I K RP+ GTLVVCPTSVLRQ Sbjct: 544 DDEDDDAEPHLKKPALAHLADTCKPEATSSTIKTENPIANVKARPAAGTLVVCPTSVLRQ 603
Query: 201 WAHELKV*ISAEAALSVHLYHGSGRTRDPHELAKHDVVLTTYSIVSLEVPKQPLPDEKEA 22 WA EL+ ++++A L+ +YHGS RT+DP++L K+DVVLTTYSIVS+EVPKQ PD + Sbjct: 604 WADELRNKVTSKANLTFLVYHGSNRTKDPNDLTKYDVVLTTYSIVSMEVPKQSSPDSDDE 663
Query: 21 DGRNP 7 + P Sbjct: 664 EKGKP 668
>tr|Q5ZCG4|Q5ZCG4_ORYSJ Putative ATPase OS=Oryza sativa subsp. japonica GN=P0010B10.13-2 PE=4 SV=1 Length = 1228
Score = 117 bits (292), Expect = 4e-25 Identities = 64/125 (51%), Positives = 81/125 (64%), Gaps = 8/125 (6%) Frame = -1
Query: 357 DLEDDDCHPI----ATGHLKVGCQSEQGLLS----NVITGSKGRPSTGTLVVCPTSVLRQ 202 D EDDD P A HL C+ E + N I K RP+ GTLVVCPTSVLRQ Sbjct: 559 DDEDDDAEPHLKKPALAHLADTCKPEATSSTIKTENPIANVKARPAAGTLVVCPTSVLRQ 618
Query: 201 WAHELKV*ISAEAALSVHLYHGSGRTRDPHELAKHDVVLTTYSIVSLEVPKQPLPDEKEA 22 WA EL+ ++++A L+ +YHGS RT+DP++L K+DVVLTTYSIVS+EVPKQ PD + Sbjct: 619 WADELRNKVTSKANLTFLVYHGSNRTKDPNDLTKYDVVLTTYSIVSMEVPKQSSPDSDDE 678
Query: 21 DGRNP 7 + P Sbjct: 679 EKGKP 683
>tr|O22731|O22731_ARATH F11P17.13 protein OS=Arabidopsis thaliana GN=F11P17.13 PE=4 SV=1 Length = 1272
Score = 117 bits (292), Expect = 4e-25 Identities = 54/79 (68%), Positives = 69/79 (87%) Frame = -1
Query: 255 GRPSTGTLVVCPTSVLRQWAHELKV*ISAEAALSVHLYHGSGRTRDPHELAKHDVVLTTY 76 GRP+ GTLVVCPTSV+RQWA EL +++EA LSV +YHGS RT+DPHELAK+DVV+TT+ Sbjct: 668 GRPAAGTLVVCPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTKDPHELAKYDVVVTTF 727
Query: 75 SIVSLEVPKQPLPDEKEAD 19 SIVS+EVPKQPL D+++ + Sbjct: 728 SIVSMEVPKQPLVDDEDEE 746
>tr|B8AAE9|B8AAE9_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_03975 PE=4 SV=1 Length = 1270
Score = 117 bits (292), Expect = 4e-25 Identities = 64/125 (51%), Positives = 81/125 (64%), Gaps = 8/125 (6%) Frame = -1
Query: 357 DLEDDDCHPI----ATGHLKVGCQSEQGLLS----NVITGSKGRPSTGTLVVCPTSVLRQ 202 D EDDD P A HL C+ E + N I K RP+ GTLVVCPTSVLRQ Sbjct: 601 DDEDDDAEPHLKKPALAHLADTCKPEATSSTIKTENPIANVKARPAAGTLVVCPTSVLRQ 660
Query: 201 WAHELKV*ISAEAALSVHLYHGSGRTRDPHELAKHDVVLTTYSIVSLEVPKQPLPDEKEA 22 WA EL+ ++++A L+ +YHGS RT+DP++L K+DVVLTTYSIVS+EVPKQ PD + Sbjct: 661 WADELRNKVTSKANLTFLVYHGSNRTKDPNDLTKYDVVLTTYSIVSMEVPKQSSPDSDDE 720
Query: 21 DGRNP 7 + P Sbjct: 721 EKGKP 725
>tr|B3H7J3|B3H7J3_ARATH Uncharacterized protein At1g61140.3 OS=Arabidopsis thaliana GN=At1g61140 PE=4 SV=1 Length = 1122
Score = 117 bits (292), Expect = 4e-25 Identities = 54/79 (68%), Positives = 69/79 (87%) Frame = -1
Query: 255 GRPSTGTLVVCPTSVLRQWAHELKV*ISAEAALSVHLYHGSGRTRDPHELAKHDVVLTTY 76 GRP+ GTLVVCPTSV+RQWA EL +++EA LSV +YHGS RT+DPHELAK+DVV+TT+ Sbjct: 503 GRPAAGTLVVCPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTKDPHELAKYDVVVTTF 562
Query: 75 SIVSLEVPKQPLPDEKEAD 19 SIVS+EVPKQPL D+++ + Sbjct: 563 SIVSMEVPKQPLVDDEDEE 581
>tr|B3H7C1|B3H7C1_ARATH Uncharacterized protein At1g61140.2 OS=Arabidopsis thaliana GN=At1g61140 PE=4 SV=1 Length = 1022
Score = 117 bits (292), Expect = 4e-25 Identities = 54/79 (68%), Positives = 69/79 (87%) Frame = -1
Query: 255 GRPSTGTLVVCPTSVLRQWAHELKV*ISAEAALSVHLYHGSGRTRDPHELAKHDVVLTTY 76 GRP+ GTLVVCPTSV+RQWA EL +++EA LSV +YHGS RT+DPHELAK+DVV+TT+ Sbjct: 668 GRPAAGTLVVCPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTKDPHELAKYDVVVTTF 727
Query: 75 SIVSLEVPKQPLPDEKEAD 19 SIVS+EVPKQPL D+++ + Sbjct: 728 SIVSMEVPKQPLVDDEDEE 746
>tr|A2ZYF1|A2ZYF1_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_003573 PE=4 SV=1 Length = 1282
Score = 117 bits (292), Expect = 4e-25 Identities = 64/125 (51%), Positives = 81/125 (64%), Gaps = 8/125 (6%) Frame = -1
Query: 357 DLEDDDCHPI----ATGHLKVGCQSEQGLLS----NVITGSKGRPSTGTLVVCPTSVLRQ 202 D EDDD P A HL C+ E + N I K RP+ GTLVVCPTSVLRQ Sbjct: 613 DDEDDDAEPHLKKPALAHLADTCKPEATSSTIKTENPIANVKARPAAGTLVVCPTSVLRQ 672
Query: 201 WAHELKV*ISAEAALSVHLYHGSGRTRDPHELAKHDVVLTTYSIVSLEVPKQPLPDEKEA 22 WA EL+ ++++A L+ +YHGS RT+DP++L K+DVVLTTYSIVS+EVPKQ PD + Sbjct: 673 WADELRNKVTSKANLTFLVYHGSNRTKDPNDLTKYDVVLTTYSIVSMEVPKQSSPDSDDE 732
Query: 21 DGRNP 7 + P Sbjct: 733 EKGKP 737
>tr|A9RE31|A9RE31_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_112295 PE=4 SV=1 Length = 729
Score = 115 bits (289), Expect = 8e-25 Identities = 53/85 (62%), Positives = 70/85 (82%) Frame = -1
Query: 267 TGSKGRPSTGTLVVCPTSVLRQWAHELKV*ISAEAALSVHLYHGSGRTRDPHELAKHDVV 88 + +KGRP+ GTLVVCPTSVLRQWA E++ ++ +A LSV +YHGS R +DP E+AK DVV Sbjct: 81 SSNKGRPAAGTLVVCPTSVLRQWAQEIRDKVATKAGLSVLVYHGSNRIKDPQEIAKFDVV 140
Query: 87 LTTYSIVSLEVPKQPLPDEKEADGR 13 L+TYSIVS+EVPKQ LP+E++ + R Sbjct: 141 LSTYSIVSMEVPKQALPEERDEENR 165
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