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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919415
Clone id YMU001_000124_H01
Library
Length 568
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000124_H01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGGTACTCCAACCAGATAATCCACATTCCTTTCGGGTTGCGTACAATGTGCGTACATGTA
ATTGACTGTTGTATGAGATACACAATATAACCAATTACGTGCATGCCCATGCATTGCACT
AACTTTAGGGGAATTTTGCCGCTATTTGTTTACGTGTCTTTCTAATTGTAAGAGGCACAA
ACAGTAAGATGAGGGATGTAGAGATAAACAAATGAGATGATCGATTAGGAGTGTTAGAAC
TTCCATGTTGTTGTTCTAAATTTTAATTTCCCTCAATCAACAAGGATCGTGTTCTTTCAT
CGTCGACCGTTGTTCTTGTGGTTTGCTTTCGAATAATTCGAGGTTGAGAACCTTGTCTTC
TATATGGGATAGCCTCTCCTCAAACAAGCTTATCGTCTTTGTTAATGTAGCTATTTGACT
TATCAAGTGCTCTAATGTCATTGTCAGAGCTTGTGTCTCTTGCAAATCCAGATTGCAGCT
TCCATCTTGATCGCTATTTGAAAGCCTTGTCGGAGATGAGCTTGGTTCGGGAACTGAACC
GATGTTCTCATGAGCCTCCGTGCAAGTT
■■Homology search results ■■ -
sp_hit_id Q2TBP4
Definition sp|Q2TBP4|WD51A_BOVIN WD repeat-containing protein 51A OS=Bos taurus
Align length 67
Score (bit) 43.5
E-value 0.0007
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919415|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_H01.
         (568 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2TBP4|WD51A_BOVIN WD repeat-containing protein 51A OS=Bos ta...    44   7e-04
sp|Q8NBT0|WD51A_HUMAN WD repeat-containing protein 51A OS=Homo s...    43   0.001
sp|Q5RD06|WD51B_PONAB WD repeat-containing protein 51B OS=Pongo ...    42   0.003
sp|Q8TC44|WD51B_HUMAN WD repeat-containing protein 51B OS=Homo s...    42   0.003
sp|Q8JZX3|WD51A_MOUSE WD repeat-containing protein 51A OS=Mus mu...    41   0.004
sp|Q8BHD1|WD51B_MOUSE WD repeat-containing protein 51B OS=Mus mu...    38   0.040
sp|Q8SQK7|NUF2_ENCCU Probable kinetochore protein NUF2 OS=Enceph...    33   1.3  
sp|P30622|CLIP1_HUMAN CAP-Gly domain-containing linker protein 1...    32   1.7  
sp|Q06SJ3|RR4_STIHE 30S ribosomal protein S4, chloroplastic OS=S...    31   3.8  
sp|Q9XTN2|IRS1_DROME Insulin receptor substrate 1 OS=Drosophila ...    31   3.8  
sp|P87231|MUS81_SCHPO Crossover junction endonuclease mus81 OS=S...    30   6.4  
sp|Q9WUW3|CFAI_RAT Complement factor I OS=Rattus norvegicus GN=C...    30   6.4  
sp|Q6RT24|CENPE_MOUSE Centromere-associated protein E OS=Mus mus...    30   6.4  
sp|Q61543|GSLG1_MOUSE Golgi apparatus protein 1 OS=Mus musculus ...    30   8.4  
sp|Q9VZF4|FBXW7_DROME F-box/WD repeat-containing protein 7 OS=Dr...    30   8.4  

>sp|Q2TBP4|WD51A_BOVIN WD repeat-containing protein 51A OS=Bos
           taurus GN=WDR51A PE=2 SV=1
          Length = 407

 Score = 43.5 bits (101), Expect = 7e-04
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
 Frame = -2

Query: 540 GSVPE--PSSSPTR-LSNSDQDGSCNLDLQETQALTMTLEHLISQIATLTKTISLFEERL 370
           G++PE  P   P R  S           +   Q+LT TLEH++ Q+  LT+T+S+ E+RL
Sbjct: 325 GTLPEVDPLVPPGRGRSQESMQSHSQEPVSVPQSLTSTLEHIVGQLDVLTQTVSILEQRL 384

Query: 369 SHIEDKV 349
           +  EDK+
Sbjct: 385 TLTEDKL 391


>sp|Q8NBT0|WD51A_HUMAN WD repeat-containing protein 51A OS=Homo
           sapiens GN=WDR51A PE=2 SV=2
          Length = 407

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 18/35 (51%), Positives = 27/35 (77%)
 Frame = -2

Query: 453 QALTMTLEHLISQIATLTKTISLFEERLSHIEDKV 349
           Q LT TLEH++ Q+  LT+T+S+ E+RL+  EDK+
Sbjct: 357 QTLTSTLEHIVGQLDVLTQTVSILEQRLTLTEDKL 391


>sp|Q5RD06|WD51B_PONAB WD repeat-containing protein 51B OS=Pongo
           abelii GN=WDR51B PE=2 SV=1
          Length = 451

 Score = 41.6 bits (96), Expect = 0.003
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
 Frame = -2

Query: 537 SVPEPSSSPTRLSNSDQDGSCNLDL-QETQ-----ALTMTLEHLISQIATLTKTISLFEE 376
           S+  P  SPT      +D S   DL  E+Q     A+T  LEH++ Q+  LT+T+S+ E+
Sbjct: 368 SLMSPECSPTTTKKKTEDMS---DLPSESQRSIPLAVTDALEHIMEQLNVLTQTVSILEQ 424

Query: 375 RLSHIEDKV 349
           RL+  EDK+
Sbjct: 425 RLTLTEDKL 433


>sp|Q8TC44|WD51B_HUMAN WD repeat-containing protein 51B OS=Homo
           sapiens GN=WDR51B PE=1 SV=1
          Length = 478

 Score = 41.6 bits (96), Expect = 0.003
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = -2

Query: 537 SVPEPSSSPTRLSNSDQDGS---CNLDLQETQALTMTLEHLISQIATLTKTISLFEERLS 367
           S+  P   PT      +D S   C        A+T  LEH++ Q+  LT+T+S+ E+RL+
Sbjct: 395 SLMSPECLPTTTKKKTEDMSDLPCESQRSIPLAVTDALEHIMEQLNVLTQTVSILEQRLT 454

Query: 366 HIEDKV 349
             EDK+
Sbjct: 455 LTEDKL 460


>sp|Q8JZX3|WD51A_MOUSE WD repeat-containing protein 51A OS=Mus
           musculus GN=Wdr51a PE=2 SV=2
          Length = 405

 Score = 41.2 bits (95), Expect = 0.004
 Identities = 17/35 (48%), Positives = 27/35 (77%)
 Frame = -2

Query: 453 QALTMTLEHLISQIATLTKTISLFEERLSHIEDKV 349
           Q LT TLEH++ Q+  LT+T+S+ E+RL+  ED++
Sbjct: 355 QTLTSTLEHIVGQLDILTQTVSILEQRLTLTEDRL 389


>sp|Q8BHD1|WD51B_MOUSE WD repeat-containing protein 51B OS=Mus
           musculus GN=Wdr51b PE=2 SV=1
          Length = 476

 Score = 37.7 bits (86), Expect = 0.040
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = -2

Query: 534 VPEPSSSPTRLSNSDQDGSCNLDLQETQ-ALTMTLEHLISQIATLTKTISLFEERLSHIE 358
           +PE SS+  +    D     +  L+    A+   LEH++ Q+  LT+T+S+ E+RLS  E
Sbjct: 396 MPECSSTTVKKRPEDVSDVPSESLRSVPLAVADALEHIMEQLNILTQTVSILEQRLSLTE 455

Query: 357 DKV 349
           DK+
Sbjct: 456 DKL 458


>sp|Q8SQK7|NUF2_ENCCU Probable kinetochore protein NUF2
           OS=Encephalitozoon cuniculi GN=NUF2 PE=3 SV=1
          Length = 439

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 19/71 (26%), Positives = 37/71 (52%)
 Frame = -2

Query: 504 LSNSDQDGSCNLDLQETQALTMTLEHLISQIATLTKTISLFEERLSHIEDKVLNLELFES 325
           +SN + D + +   +E   L + +++L S I  L   ++    ++SHIE K+ NL+  + 
Sbjct: 293 ISNREADKTIDKTNREISELEVQMKNLDSGINALKIRLNHVSRQISHIESKIFNLQDNDK 352

Query: 324 KPQEQRSTMKE 292
           +  E+ S   E
Sbjct: 353 RCSEEISAKLE 363


>sp|P30622|CLIP1_HUMAN CAP-Gly domain-containing linker protein 1
           OS=Homo sapiens GN=CLIP1 PE=1 SV=1
          Length = 1427

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = -2

Query: 465 LQETQALTMTLEHLISQIATLTKTISLFEERLSHIEDKVLNLELFESKPQEQRSTMKE 292
           LQE +     LE L ++    TK I  F  +L   E+K+L+L+       E +S MK+
Sbjct: 724 LQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKK 781


>sp|Q06SJ3|RR4_STIHE 30S ribosomal protein S4, chloroplastic
           OS=Stigeoclonium helveticum GN=rps4 PE=3 SV=1
          Length = 2922

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = -2

Query: 513 PTRLSNSDQDGSCNLDLQETQALTMTLEHLISQIATLTKTISLFEERLSHIEDKVLNLEL 334
           P   SN   D S N  L    AL    +++ S++++L    +  + + +++  K+L   L
Sbjct: 567 PKLNSNKLADQSVNAQLMNVPALFKQYKNIFSKLSSLKNQKNFKKPKYTNLRSKILTNFL 626

Query: 333 FESK 322
           FESK
Sbjct: 627 FESK 630


>sp|Q9XTN2|IRS1_DROME Insulin receptor substrate 1 OS=Drosophila
           melanogaster GN=chico PE=1 SV=1
          Length = 968

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
 Frame = -2

Query: 468 DLQETQALTMTLE--HLISQIATLTKTISLFEERLSHIEDKVLNLEL----FESKPQEQR 307
           D Q    LT T    H +++I+T   +   + E+ S  E+K  N  L    F SKP    
Sbjct: 669 DYQTAPPLTATAAPVHDLNKISTYNISAEKWREQPSRSEEKKSNSPLNDNTFSSKPTNVE 728

Query: 306 STMKEHD 286
           ST K HD
Sbjct: 729 STSKSHD 735
tr_hit_id A9URA9
Definition tr|A9URA9|A9URA9_MONBE Predicted protein OS=Monosiga brevicollis
Align length 34
Score (bit) 43.9
E-value 0.006
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919415|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_H01.
         (568 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9URA9|A9URA9_MONBE Predicted protein OS=Monosiga brevicollis...    44   0.006
tr|Q7ZVF0|Q7ZVF0_DANRE WD repeat domain 51A OS=Danio rerio GN=wd...    43   0.011
tr|B2RDV4|B2RDV4_HUMAN cDNA, FLJ96786 OS=Homo sapiens PE=2 SV=1        43   0.014
tr|A4FUW4|A4FUW4_HUMAN WDR51A protein (Fragment) OS=Homo sapiens...    43   0.014
tr|Q7T0P4|Q7T0P4_XENLA MGC69111 protein OS=Xenopus laevis GN=wdr...    42   0.031
tr|Q8IU52|Q8IU52_HUMAN TUWD12 OS=Homo sapiens GN=TUWD12 PE=2 SV=1      42   0.031
tr|A0MNP0|A0MNP0_HUMAN CDW9/WDR51B OS=Homo sapiens GN=WDR51B PE=...    42   0.031
tr|Q8BJN7|Q8BJN7_MOUSE Putative uncharacterized protein OS=Mus m...    41   0.041
tr|B3SC86|B3SC86_TRIAD Putative uncharacterized protein OS=Trich...    41   0.041
tr|B6LG87|B6LG87_BRAFL Putative uncharacterized protein (Fragmen...    40   0.090
tr|A5PKH9|A5PKH9_BOVIN WDR51B protein OS=Bos taurus GN=WDR51B PE...    39   0.15 
tr|Q4RX11|Q4RX11_TETNG Chromosome 11 SCAF14979, whole genome sho...    39   0.20 
tr|A7RTA6|A7RTA6_NEMVE Predicted protein OS=Nematostella vectens...    39   0.20 
tr|Q7SXR5|Q7SXR5_DANRE WD repeat domain 51B OS=Danio rerio GN=wd...    38   0.45 
tr|Q6TEQ1|Q6TEQ1_DANRE TUWD12 OS=Danio rerio GN=wdr51b PE=2 SV=1       38   0.45 
tr|Q28I85|Q28I85_XENTR WD repeat domain 51A (WD repeat domain 51...    38   0.45 
tr|A2CEH0|A2CEH0_DANRE WD repeat domain 51B OS=Danio rerio GN=wd...    38   0.45 
tr|Q9D3W6|Q9D3W6_MOUSE Putative uncharacterized protein OS=Mus m...    38   0.45 
tr|A6H699|A6H699_MOUSE Wdr51b protein OS=Mus musculus GN=Wdr51b ...    38   0.45 
tr|Q8UW47|Q8UW47_FUGRU Putative uncharacterized protein unknown ...    37   0.59 
tr|A8I2S8|A8I2S8_CHLRE Centriole proteome protein (Fragment) OS=...    37   0.77 
tr|Q5ZM40|Q5ZM40_CHICK Putative uncharacterized protein OS=Gallu...    36   1.7  
tr|Q4V7Z1|Q4V7Z1_XENLA MGC114911 protein (WD40 repeat protein Pi...    35   2.2  
tr|Q9NDI5|Q9NDI5_TETPY Epiplasmin C OS=Tetrahymena pyriformis GN...    35   2.2  
tr|Q23KF8|Q23KF8_TETTH Putative uncharacterized protein OS=Tetra...    35   2.9  
tr|Q66I42|Q66I42_DANRE Radixin OS=Danio rerio GN=rdx PE=2 SV=1         35   3.8  
tr|Q23FB7|Q23FB7_TETTH Viral A-type inclusion protein repeat con...    35   3.8  
tr|Q0FCD2|Q0FCD2_9RHOB ATP phosphoribosyltransferase regulatory ...    34   6.5  
tr|A8EWW2|A8EWW2_ARCB4 Outer membrane efflux lipoprotein OS=Arco...    33   8.5  

>tr|A9URA9|A9URA9_MONBE Predicted protein OS=Monosiga brevicollis
           GN=14637 PE=4 SV=1
          Length = 402

 Score = 43.9 bits (102), Expect = 0.006
 Identities = 17/34 (50%), Positives = 29/34 (85%)
 Frame = -2

Query: 450 ALTMTLEHLISQIATLTKTISLFEERLSHIEDKV 349
           +LT TLEH++SQ+  LT+T+S+ EERL+++E+ +
Sbjct: 353 SLTSTLEHIVSQLDVLTQTVSILEERLTYVEESM 386


>tr|Q7ZVF0|Q7ZVF0_DANRE WD repeat domain 51A OS=Danio rerio
           GN=wdr51a PE=2 SV=1
          Length = 416

 Score = 43.1 bits (100), Expect = 0.011
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
 Frame = -2

Query: 561 TEAHENIGSVPEPS-SSPTRLSNSDQDGSCNLDLQETQALTMTLEHLISQIATLTKTISL 385
           TE    +G   E S   PT    +D DG          ALT TL+H+I Q+  LT+T+++
Sbjct: 338 TEVSPLLGVSAERSVREPTPQQQTDADGV-------PAALTSTLQHIIGQLDVLTQTVAI 390

Query: 384 FEERLSHIEDKVLNLELFESKPQEQRSTMKEH 289
            E+RL+  EDK+      +   ++Q   + EH
Sbjct: 391 LEQRLTLTEDKL------KECLEQQHQALTEH 416


>tr|B2RDV4|B2RDV4_HUMAN cDNA, FLJ96786 OS=Homo sapiens PE=2 SV=1
          Length = 364

 Score = 42.7 bits (99), Expect = 0.014
 Identities = 18/35 (51%), Positives = 27/35 (77%)
 Frame = -2

Query: 453 QALTMTLEHLISQIATLTKTISLFEERLSHIEDKV 349
           Q LT TLEH++ Q+  LT+T+S+ E+RL+  EDK+
Sbjct: 314 QTLTSTLEHIVGQLDVLTQTVSILEQRLTLTEDKL 348


>tr|A4FUW4|A4FUW4_HUMAN WDR51A protein (Fragment) OS=Homo sapiens
           GN=WDR51A PE=2 SV=1
          Length = 441

 Score = 42.7 bits (99), Expect = 0.014
 Identities = 18/35 (51%), Positives = 27/35 (77%)
 Frame = -2

Query: 453 QALTMTLEHLISQIATLTKTISLFEERLSHIEDKV 349
           Q LT TLEH++ Q+  LT+T+S+ E+RL+  EDK+
Sbjct: 391 QTLTSTLEHIVGQLDVLTQTVSILEQRLTLTEDKL 425


>tr|Q7T0P4|Q7T0P4_XENLA MGC69111 protein OS=Xenopus laevis GN=wdr51a
           PE=2 SV=1
          Length = 399

 Score = 41.6 bits (96), Expect = 0.031
 Identities = 29/90 (32%), Positives = 42/90 (46%)
 Frame = -2

Query: 558 EAHENIGSVPEPSSSPTRLSNSDQDGSCNLDLQETQALTMTLEHLISQIATLTKTISLFE 379
           E H    SV + SS  +  S S        +    Q +  TLEH++ Q+  LT+T+ + E
Sbjct: 307 EPHITEMSVKDRSSPLSYTSRSVDQHHPQAEDGNLQTVASTLEHIVGQLDILTRTVGILE 366

Query: 378 ERLSHIEDKVLNLELFESKPQEQRSTMKEH 289
           +RLS  EDK     L E   Q+Q +    H
Sbjct: 367 QRLSLTEDK-----LKECIEQQQATVPPSH 391


>tr|Q8IU52|Q8IU52_HUMAN TUWD12 OS=Homo sapiens GN=TUWD12 PE=2 SV=1
          Length = 348

 Score = 41.6 bits (96), Expect = 0.031
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = -2

Query: 537 SVPEPSSSPTRLSNSDQDGS---CNLDLQETQALTMTLEHLISQIATLTKTISLFEERLS 367
           S+  P   PT      +D S   C        A+T  LEH++ Q+  LT+T+S+ E+RL+
Sbjct: 265 SLMSPECLPTTTKKKTEDMSDLPCESQRSIPLAVTDALEHIMEQLNVLTQTVSILEQRLT 324

Query: 366 HIEDKV 349
             EDK+
Sbjct: 325 LTEDKL 330


>tr|A0MNP0|A0MNP0_HUMAN CDW9/WDR51B OS=Homo sapiens GN=WDR51B PE=2
           SV=1
          Length = 478

 Score = 41.6 bits (96), Expect = 0.031
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = -2

Query: 537 SVPEPSSSPTRLSNSDQDGS---CNLDLQETQALTMTLEHLISQIATLTKTISLFEERLS 367
           S+  P   PT      +D S   C        A+T  LEH++ Q+  LT+T+S+ E+RL+
Sbjct: 395 SLMSPECLPTTTKKKTEDMSDLPCESQRSIPLAVTDALEHIMEQLNVLTQTVSILEQRLT 454

Query: 366 HIEDKV 349
             EDK+
Sbjct: 455 LTEDKL 460


>tr|Q8BJN7|Q8BJN7_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=Wdr51a PE=2 SV=1
          Length = 203

 Score = 41.2 bits (95), Expect = 0.041
 Identities = 17/35 (48%), Positives = 27/35 (77%)
 Frame = -2

Query: 453 QALTMTLEHLISQIATLTKTISLFEERLSHIEDKV 349
           Q LT TLEH++ Q+  LT+T+S+ E+RL+  ED++
Sbjct: 153 QTLTSTLEHIVGQLDILTQTVSILEQRLTLTEDRL 187


>tr|B3SC86|B3SC86_TRIAD Putative uncharacterized protein
           OS=Trichoplax adhaerens GN=TRIADDRAFT_51125 PE=4 SV=1
          Length = 381

 Score = 41.2 bits (95), Expect = 0.041
 Identities = 17/33 (51%), Positives = 27/33 (81%)
 Frame = -2

Query: 447 LTMTLEHLISQIATLTKTISLFEERLSHIEDKV 349
           L+ TLEH++SQ+  LT+T+S+ E+RL+  EDK+
Sbjct: 331 LSRTLEHIVSQLDVLTQTVSILEQRLTMTEDKL 363


>tr|B6LG87|B6LG87_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_205723 PE=4 SV=1
          Length = 398

 Score = 40.0 bits (92), Expect = 0.090
 Identities = 24/83 (28%), Positives = 43/83 (51%)
 Frame = -2

Query: 543 IGSVPEPSSSPTRLSNSDQDGSCNLDLQETQALTMTLEHLISQIATLTKTISLFEERLSH 364
           +  VP P++ P +L+N                   TLEH++ Q+  +T+T+S+ E+RLS 
Sbjct: 335 VRQVPRPATIPPQLAN-------------------TLEHIVGQLDVITQTVSILEQRLSM 375

Query: 363 IEDKVLNLELFESKPQEQRSTMK 295
            E+K     L E+   +Q+ T++
Sbjct: 376 TENK-----LREALDNQQKITLQ 393