BP919420
Clone id YMU001_000124_H08
Library
Length 471
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000124_H08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
ACAATCCTTGACCTTTCATGAATGCTTCCTCTCTCTGGGACCTTGTTAACTTGGCGCTAG
GAACAACTCCCATAAATTGCCCTTCCTTCCCTAACCCAGAATCTTTGCACTTGCGCACAA
CCTTCTCTTCAGTCCTTGGAGGGTGGTTTAACACATCACGATCTTCTTGAGCACCATCAA
GGACAAAATTTTCCTTACTTGATTTGGCTCTCTTTGACCTGTGCTCTTTATGGTCTTCTT
TATGTGGAACAGTACTAGGGCTTCGGGCATGCTTTTGGAGCACATCAGCACCATAGCAAT
GGCTGCTGCCACGTTGACCATTCAAAAAGCTACCACTACTGTCACTCTGAGAGCCCTCTC
CATCCTTTGACCTATGAACCGCCTCTCTTGACTTCCCCTTGCTTGACGATTTAGAGCTCG
AATGACTTCCTCTATGTCTTTCTTTGTGCCTCCTTGTGGAGGCATCATCTC
■■Homology search results ■■ -
sp_hit_id Q8BI67
Definition sp|Q8BI67|ZN473_MOUSE Zinc finger protein 473 homolog OS=Mus musculus
Align length 92
Score (bit) 33.9
E-value 0.37
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919420|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_H08.
(471 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8BI67|ZN473_MOUSE Zinc finger protein 473 homolog OS=Mus mus... 34 0.37
sp|Q9Z2E2|MBD1_MOUSE Methyl-CpG-binding domain protein 1 OS=Mus ... 32 1.1
sp|Q8IW19|APLF_HUMAN Aprataxin and PNK-like factor OS=Homo sapie... 32 1.4
sp|Q09221|TG308_CAEEL Putative protein tag-308 OS=Caenorhabditis... 32 1.8
sp|Q8TD26|CHD6_HUMAN Chromodomain-helicase-DNA-binding protein 6... 31 3.1
sp|O15015|ZN646_HUMAN Zinc finger protein 646 OS=Homo sapiens GN... 30 4.1
sp|Q10195|YBY6_SCHPO Uncharacterized protein C11C11.06c OS=Schiz... 30 6.9
sp|Q7V9F9|RS6_PROMA 30S ribosomal protein S6 OS=Prochlorococcus ... 30 6.9
sp|Q6P9P0|F178A_MOUSE Protein FAM178A OS=Mus musculus GN=Fam178a... 29 9.1

>sp|Q8BI67|ZN473_MOUSE Zinc finger protein 473 homolog OS=Mus
musculus GN=Znf473 PE=2 SV=1
Length = 892

Score = 33.9 bits (76), Expect = 0.37
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Frame = -3

Query: 328 FLNGQRGSSHCYGADVLQKHARSPSTVPH-----KEDHKEHRSKRAKSSKENFVLDGAQE 164
F NGQ C G D L P ++P KE +H+S +KS +E
Sbjct: 113 FSNGQLNFEACIGEDWLNSFLGDPESLPRPDISDKESPADHQSPESKSGLSPGPPLCTRE 172

Query: 163 DRDVLNHPPRTEEKVVRKCKDSGLGKEGQFMG 68
D + P +T V+ K S L +E G
Sbjct: 173 DAVMSASPEKTLTPVILKESRSDLSQEDSVQG 204


>sp|Q9Z2E2|MBD1_MOUSE Methyl-CpG-binding domain protein 1 OS=Mus
musculus GN=Mbd1 PE=1 SV=2
Length = 636

Score = 32.3 bits (72), Expect = 1.1
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = -3

Query: 319 GQRGSSHCYGADVLQKHARSPSTVPH-----KEDHKEHRSKRAKSSKENFVLDGAQEDRD 155
G+R SS Q+H+++P PH E + H S A +S F+ ED D
Sbjct: 283 GKRDSSKRGSKVASQRHSQAPPLPPHPASQYTEPTELHISDIAPTSPAEFIYYCVDEDED 342

Query: 154 VLNHPPRTEEKVVRKC 107
L P T ++ RKC
Sbjct: 343 ELQ--PYTNQRQNRKC 356


>sp|Q8IW19|APLF_HUMAN Aprataxin and PNK-like factor OS=Homo sapiens
GN=APLF PE=1 SV=1
Length = 511

Score = 32.0 bits (71), Expect = 1.4
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = -3

Query: 322 NGQRGSSHCYGADVLQKHARSPSTVPHKEDHKEHRSKRAKSSKENFVLDGAQEDRDVLNH 143
N QR + KH + PHKED S+ S++ + + D +Q +
Sbjct: 290 NAQRNKLPIEELGKVSKHKIATKRTPHKEDEAMSCSENCSSAQGDSLQDESQGSHSESSS 349

Query: 142 PPRTEEKVVRKCKDSGL-GKEG 80
P E + K DS L G EG
Sbjct: 350 NPSNPETLHAKATDSVLQGSEG 371


>sp|Q09221|TG308_CAEEL Putative protein tag-308 OS=Caenorhabditis
elegans GN=tag-308 PE=2 SV=3
Length = 7548

Score = 31.6 bits (70), Expect = 1.8
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = -3

Query: 262 SPSTVPHKEDHKEHRSKRAKSSKENFVLDGAQEDRDVLNHPPRTEEKVVRKCKD 101
S S V +E KEH SK+ SS+E + + +RD EE+VV+ KD
Sbjct: 1717 SVSGVMKRESRKEHSSKKFTSSREEIIQGFWKGERD--------EERVVKTLKD 1762


>sp|Q8TD26|CHD6_HUMAN Chromodomain-helicase-DNA-binding protein 6
OS=Homo sapiens GN=CHD6 PE=1 SV=3
Length = 2715

Score = 30.8 bits (68), Expect = 3.1
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Frame = -3

Query: 241 KEDHKEHRSKRAKSSKENFVLDGAQEDRDVLNHPPRTEEKVVRKCKDSGL----GKEGQF 74
KE K K+AK KE DGA++ R E K R C DS K +
Sbjct: 128 KEPRKAEEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRSCTDSAARTKSRKASKE 187

Query: 73 MGVVPSAKLTRSQRE 29
G P K + +R+
Sbjct: 188 QGPTPVEKKKKGKRK 202


>sp|O15015|ZN646_HUMAN Zinc finger protein 646 OS=Homo sapiens
GN=ZNF646 PE=2 SV=1
Length = 1829

Score = 30.4 bits (67), Expect = 4.1
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = -3

Query: 319 GQRGSSHCYGADVLQKHARSPSTVPHKEDHKEHRSKRAKSSKENFVLDGAQEDRDVLNHP 140
G+ SH A LQ HAR S VP + + E R +A + ++ VL G + ++ +
Sbjct: 1591 GKAFESHQELASHLQAHARGHSQVPAQME--EARDPKAGTGEDQVVLPGQGKAQEAPSET 1648

Query: 139 PRTEEKVVRKCK 104
PR + V + +
Sbjct: 1649 PRGPGESVERAR 1660


>sp|Q10195|YBY6_SCHPO Uncharacterized protein C11C11.06c
OS=Schizosaccharomyces pombe GN=SPBC11C11.06c PE=2 SV=1
Length = 178

Score = 29.6 bits (65), Expect = 6.9
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Frame = -3

Query: 325 LNGQRGSSHCYGADVLQKHA----RSPSTVPHKEDHKEHRSKRAKSSKEN-FVLDGAQED 161
++ + GSSH A+++++HA + P + +E S+ E VLD +ED
Sbjct: 1 MSAKEGSSHPSYAEIVREHAPEQTAAEKAAPQPPEVEEVLSEEPYQKNEKVVVLD--EED 58

Query: 160 RDVLNHPPRTEEKVVRKCKDSGLGKEGQFMG 68
D HP E K K+S +G+ G
Sbjct: 59 ADAFLHPEEAEAK-----KESEKPSDGEKKG 84


>sp|Q7V9F9|RS6_PROMA 30S ribosomal protein S6 OS=Prochlorococcus
marinus GN=rpsF PE=3 SV=1
Length = 210

Score = 29.6 bits (65), Expect = 6.9
Identities = 25/83 (30%), Positives = 37/83 (44%)
Frame = -3

Query: 274 KHARSPSTVPHKEDHKEHRSKRAKSSKENFVLDGAQEDRDVLNHPPRTEEKVVRKCKDSG 95
K A+ V +D KE K AK +KE +E +D + K V++ KD+
Sbjct: 135 KEAKDTKEVKEAKDTKE--VKEAKDTKE------VKEAKDTKEVKEAKDTKEVKEAKDTK 186

Query: 94 LGKEGQFMGVVPSAKLTRSQREE 26
KE + V AK T+ +EE
Sbjct: 187 EVKEAKDTKEVKEAKDTKEVKEE 209


>sp|Q6P9P0|F178A_MOUSE Protein FAM178A OS=Mus musculus GN=Fam178a
PE=2 SV=2
Length = 1278

Score = 29.3 bits (64), Expect = 9.1
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Frame = -3

Query: 307 SSHCYGADVLQKHARSPSTVPHKEDHKEHRSKRAKSSKENFVLDGAQEDRDVLNHPPRTE 128
SS G+ + H R ST P + K S +F A++D+ +L+ P ++
Sbjct: 14 SSPAPGSSPPRCHLRPGSTAPAAAGKRTESPGDRKQSIIDFFKPAAKQDKHMLDSPQKSN 73

Query: 127 EKVVRKCKDSGLGKEG--QFMGVVPSAKLTRSQRE--------EAFMKG 11
K + +GL G QF + S K + +R EAFMKG
Sbjct: 74 IKY----RGNGLSITGTEQFERKLSSPKKLKPKRMSSEESPILEAFMKG 118


tr_hit_id B0WBW3
Definition tr|B0WBW3|B0WBW3_CULQU Putative uncharacterized protein OS=Culex quinquefasciatus
Align length 75
Score (bit) 36.6
E-value 0.65
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919420|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_H08.
(471 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B0WBW3|B0WBW3_CULQU Putative uncharacterized protein OS=Culex... 37 0.65
tr|A5K1X7|A5K1X7_PLAVI Putative uncharacterized protein OS=Plasm... 36 1.1
tr|B6NXK9|B6NXK9_BRAFL Putative uncharacterized protein (Fragmen... 35 1.4
tr|Q699W7|Q699W7_SIVCZ Pol protein (Fragment) OS=Simian immunode... 34 3.2
tr|A7E302|A7E302_BOVIN C26H10ORF6 protein OS=Bos taurus GN=C26H1... 34 3.2
tr|Q69ZQ9|Q69ZQ9_MOUSE MKIAA1141 protein (Fragment) OS=Mus muscu... 34 4.2
tr|Q4VA40|Q4VA40_MOUSE Zfp473 protein OS=Mus musculus GN=Zfp473 ... 34 4.2
tr|B6NXJ4|B6NXJ4_BRAFL Putative uncharacterized protein OS=Branc... 34 4.2
tr|B6K618|B6K618_SCHJP DNA repair protein rad5 OS=Schizosaccharo... 34 4.2
tr|Q4SLK8|Q4SLK8_TETNG Chromosome 15 SCAF14556, whole genome sho... 33 9.3
tr|A9CMA7|A9CMA7_RAT LOC304758 protein OS=Rattus norvegicus GN=C... 33 9.3
tr|B6MAL4|B6MAL4_BRAFL Putative uncharacterized protein OS=Branc... 33 9.3
tr|B3NV36|B3NV36_DROER GG18754 OS=Drosophila erecta GN=GG18754 P... 33 9.3
tr|A0D4E6|A0D4E6_PARTE Chromosome undetermined scaffold_37, whol... 33 9.3
tr|A6UTP6|A6UTP6_META3 Histone acetyltransferase, ELP3 family OS... 33 9.3

>tr|B0WBW3|B0WBW3_CULQU Putative uncharacterized protein OS=Culex
quinquefasciatus GN=CpipJ_CPIJ004662 PE=4 SV=1
Length = 1149

Score = 36.6 bits (83), Expect = 0.65
Identities = 18/75 (24%), Positives = 42/75 (56%)
Frame = -3

Query: 250 VPHKEDHKEHRSKRAKSSKENFVLDGAQEDRDVLNHPPRTEEKVVRKCKDSGLGKEGQFM 71
VP KE+ + + K K +K++ V++GA+E+ D + +++ V K ++ L ++ + +
Sbjct: 422 VPTKEEESDTKKKNQKKTKKDTVVEGAEEECDQGESVVKAKKRRVEKVEEEPLEQQQETV 481

Query: 70 GVVPSAKLTRSQREE 26
+ + + R + EE
Sbjct: 482 KNIVTVEKEREKEEE 496


>tr|A5K1X7|A5K1X7_PLAVI Putative uncharacterized protein
OS=Plasmodium vivax GN=PVX_113825 PE=4 SV=1
Length = 3996

Score = 35.8 bits (81), Expect = 1.1
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = -3

Query: 301 HCYGADVLQKHARSPSTVPHKEDHKEHRSKRAKSSKENFVLDGAQEDRDVLNHPPR 134
HC G + +KH+ H HK+ + + A S+KEN+ D A+E+R+ + P+
Sbjct: 757 HCLGRSLKRKHSLGEEKSAHGCTHKQIK-RDAVSAKENYTHDKAEENREQESREPK 811


>tr|B6NXK9|B6NXK9_BRAFL Putative uncharacterized protein (Fragment)
OS=Branchiostoma floridae GN=BRAFLDRAFT_269557 PE=4 SV=1
Length = 365

Score = 35.4 bits (80), Expect = 1.4
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = -3

Query: 286 DVLQKHARSPSTVPHKEDHKEHRSKRAKSSKENFVLDGAQEDRDVLNHPPRTEEKVVRKC 107
D+ +K A K++ +E K+A+ S+ +F +DG ++D D + EE+V
Sbjct: 119 DLAKKRAEVLERKEEKKERRERARKQAQLSQLSFAVDGEEDDEDDDDDEEEEEEEVQPVF 178

Query: 106 KDSGLGK 86
K LGK
Sbjct: 179 KKKKLGK 185


>tr|Q699W7|Q699W7_SIVCZ Pol protein (Fragment) OS=Simian
immunodeficiency virus (isolate CPZ GAB1) PE=4 SV=1
Length = 1007

Score = 34.3 bits (77), Expect = 3.2
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = -3

Query: 199 SKENFVLDGAQEDRDVLNHPPRTEEKVVRKCKDSGLGKEGQFMGVVPSAK 50
SK N V D +L HP TE K+V K + GKE ++ VP+ K
Sbjct: 651 SKMNIVTDSQYALGIILEHPSETEHKIVEKVIQALQGKEQIYLAWVPAHK 700


>tr|A7E302|A7E302_BOVIN C26H10ORF6 protein OS=Bos taurus
GN=C26H10ORF6 PE=2 SV=1
Length = 1054

Score = 34.3 bits (77), Expect = 3.2
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 10/109 (9%)
Frame = -3

Query: 307 SSHCYGADVLQKHARSPSTVPHKEDHKEHRSKRAKSSKENFVLDGAQEDRDVLNHPPRTE 128
SS G+ + H R STVP K R K S +F +++DR +L+ P ++
Sbjct: 14 SSPAPGSSPPRCHLRPGSTVPAAAGKKTERPGDRKQSIIDFFKPASKQDRRMLDSPQKSN 73

Query: 127 EKVVRKCKDSGLGKEG--QFMGVVPSAKLTRSQRE--------EAFMKG 11
K +SGL G QF + S K ++ +R EAF+KG
Sbjct: 74 IKY----GESGLSISGTEQFERKLSSPKSSKPKRVPSEKSPVLEAFIKG 118


>tr|Q69ZQ9|Q69ZQ9_MOUSE MKIAA1141 protein (Fragment) OS=Mus musculus
GN=Zfp473 PE=2 SV=1
Length = 886

Score = 33.9 bits (76), Expect = 4.2
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Frame = -3

Query: 328 FLNGQRGSSHCYGADVLQKHARSPSTVPH-----KEDHKEHRSKRAKSSKENFVLDGAQE 164
F NGQ C G D L P ++P KE +H+S +KS +E
Sbjct: 107 FSNGQLNFEACIGEDWLNSFLGDPESLPRPDISDKESPADHQSPESKSGLSPGPPLCTRE 166

Query: 163 DRDVLNHPPRTEEKVVRKCKDSGLGKEGQFMG 68
D + P +T V+ K S L +E G
Sbjct: 167 DAVMSASPEKTLTPVILKESRSDLSQEDSVQG 198


>tr|Q4VA40|Q4VA40_MOUSE Zfp473 protein OS=Mus musculus GN=Zfp473
PE=2 SV=2
Length = 891

Score = 33.9 bits (76), Expect = 4.2
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Frame = -3

Query: 328 FLNGQRGSSHCYGADVLQKHARSPSTVPH-----KEDHKEHRSKRAKSSKENFVLDGAQE 164
F NGQ C G D L P ++P KE +H+S +KS +E
Sbjct: 112 FSNGQLNFEACIGEDWLNSFLGDPESLPRPDISDKESPADHQSPESKSGLSPGPPLCTRE 171

Query: 163 DRDVLNHPPRTEEKVVRKCKDSGLGKEGQFMG 68
D + P +T V+ K S L +E G
Sbjct: 172 DAVMSASPEKTLTPVILKESRSDLSQEDSVQG 203


>tr|B6NXJ4|B6NXJ4_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_100301 PE=4 SV=1
Length = 1436

Score = 33.9 bits (76), Expect = 4.2
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = -3

Query: 286 DVLQKHARSPSTVPHKEDHKEHRSKRAKSSKENFVLDGAQEDRDVLNHPPRTEEKVVRKC 107
D+ +K A K++ +E K+A+ S+ +F +DG +++ D + EE+V
Sbjct: 91 DLAKKRAEVLERKEEKKERRERARKQAQLSQLSFAVDGEEDEEDDDDDEEEEEEEVQPVF 150

Query: 106 KDSGLGK 86
K LGK
Sbjct: 151 KKKKLGK 157


>tr|B6K618|B6K618_SCHJP DNA repair protein rad5
OS=Schizosaccharomyces japonicus yFS275 GN=SJAG_04147
PE=4 SV=1
Length = 850

Score = 33.9 bits (76), Expect = 4.2
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = -3

Query: 268 ARSPSTVPHKED----HKEHRSKRAKSSKENFVLDGAQEDRDVLNHPPRTEEKVVRKCKD 101
ARSPS P K HKE S++ K K++ DG +E D L P +E K D
Sbjct: 2 ARSPSPEPRKHKSKGAHKEKHSEKGKHKKKSNPFDGLKELADSL---PTVDESSSAKRSD 58

Query: 100 SGLGK 86
GK
Sbjct: 59 KHSGK 63


>tr|Q4SLK8|Q4SLK8_TETNG Chromosome 15 SCAF14556, whole genome
shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
GN=GSTENG00016196001 PE=4 SV=1
Length = 444

Score = 32.7 bits (73), Expect = 9.3
Identities = 23/80 (28%), Positives = 37/80 (46%)
Frame = -3

Query: 322 NGQRGSSHCYGADVLQKHARSPSTVPHKEDHKEHRSKRAKSSKENFVLDGAQEDRDVLNH 143
N +R S +KH+RSPS HK++ K+ + K + D ++E+R+
Sbjct: 284 NRRRRRSQSISRSPKRKHSRSPSPRRHKKEKKKDKEKERDRKTDK---DYSREERE---- 336

Query: 142 PPRTEEKVVRKCKDSGLGKE 83
P + +K K KD KE
Sbjct: 337 -PSSSKKKKNKDKDKEKEKE 355