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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919421
Clone id YMU001_000124_H09
Library
Length 360
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000124_H09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTTCGGGAGAAGAATGTGATTGGACGGACAGATAGGACGGTGGTTGTGAGTACAGCTCAT
GGATTGAAGTTTACACAGTCAAAAATTGCCTATCACTCAAAAGAGATACCCGAATTGCAG
TCTAAGTTTGCGAACCCTCCGGTGGACGTGAAGGCGAATCTGGGCTCAGTCATGGATGCT
TTGCAGAGTAGGTTGCCTTCTCTTCGAGAGAAGGGATTTTGAAGCCTACGGCAGCTTATG
CACTACCAGAAAGACATAGTCATTAATGCAGACAAGCGTGAGGTATGCTTGGCAGCAGGG
GCTATGATGTCTTTTGCCACCATCACGTTTTCTTGTAGGTAACTTTCCTTGTACTCGCTG
■■Homology search results ■■ -
sp_hit_id Q9MT28
Definition sp|Q9MT28|THRC_SOLTU Threonine synthase, chloroplastic OS=Solanum tuberosum
Align length 71
Score (bit) 97.1
E-value 3.0e-20
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919421|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_H09.
         (360 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9MT28|THRC_SOLTU Threonine synthase, chloroplastic OS=Solanu...    97   3e-20
sp|Q9S7B5|THRC_ARATH Threonine synthase, chloroplastic OS=Arabid...    94   3e-19
sp|O34513|YLBM_BACSU UPF0348 protein ylbM OS=Bacillus subtilis G...    30   3.8  
sp|Q9LV01|ETOL2_ARATH ETO1-like protein 2 OS=Arabidopsis thalian...    29   6.5  
sp|Q9N0C7|EPDR1_MACFA Mammalian ependymin-related protein 1 OS=M...    29   6.5  
sp|Q9UM22|EPDR1_HUMAN Mammalian ependymin-related protein 1 OS=H...    29   6.5  
sp|A6QLI0|EPDR1_BOVIN Mammalian ependymin-related protein 1 OS=B...    29   6.5  
sp|Q6MEP6|MURA_PARUW UDP-N-acetylglucosamine 1-carboxyvinyltrans...    29   8.4  

>sp|Q9MT28|THRC_SOLTU Threonine synthase, chloroplastic OS=Solanum
           tuberosum PE=2 SV=1
          Length = 519

 Score = 97.1 bits (240), Expect = 3e-20
 Identities = 49/71 (69%), Positives = 56/71 (78%)
 Frame = +1

Query: 1   LREKNVIGRTDRTVVVSTAHGLKFTQSKIAYHSKEIPELQSKFANPPVDVKANLGSVMDA 180
           LR   VI  TDRTVVVSTAHGLKFTQSKI YHSKEI +++ +FANPPV+VKA+ GSVMD 
Sbjct: 448 LRNSGVIAPTDRTVVVSTAHGLKFTQSKIDYHSKEIKDMECRFANPPVEVKADFGSVMDV 507

Query: 181 LQSRLPSLREK 213
           L+S L S   K
Sbjct: 508 LKSYLLSQNSK 518


>sp|Q9S7B5|THRC_ARATH Threonine synthase, chloroplastic
           OS=Arabidopsis thaliana GN=At4g29840 PE=1 SV=1
          Length = 526

 Score = 93.6 bits (231), Expect = 3e-19
 Identities = 46/67 (68%), Positives = 54/67 (80%)
 Frame = +1

Query: 1   LREKNVIGRTDRTVVVSTAHGLKFTQSKIAYHSKEIPELQSKFANPPVDVKANLGSVMDA 180
           LR + VI  TDRTVVVSTAHGLKFTQSKI YHS  IP++  +F+NPPVDVKA+ G+VMD 
Sbjct: 455 LRNQGVIAPTDRTVVVSTAHGLKFTQSKIDYHSNAIPDMACRFSNPPVDVKADFGAVMDV 514

Query: 181 LQSRLPS 201
           L+S L S
Sbjct: 515 LKSYLGS 521


>sp|O34513|YLBM_BACSU UPF0348 protein ylbM OS=Bacillus subtilis
           GN=ylbM PE=3 SV=1
          Length = 415

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
 Frame = +1

Query: 4   REKNVIGRTDRTVVVSTAHGLK-FTQSKIA--YHSKEIPELQSKFANPPVDVKANLGSVM 174
           +  N++G    T +++  + +K +T ++I+  YH  ++PE ++  A+     KA +G  +
Sbjct: 160 KPNNILGYQYVTSILTGGYPMKPYTTARISSDYHDADLPEGENHIASATSIRKAMIGQNL 219

Query: 175 DALQSRLPSLREKGF*SLRQLMHYQK 252
           +A    LP+       S R+L  Y+K
Sbjct: 220 EACLRFLPAA------SARELAAYRK 239


>sp|Q9LV01|ETOL2_ARATH ETO1-like protein 2 OS=Arabidopsis thaliana
           GN=EOL2 PE=1 SV=2
          Length = 925

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = +2

Query: 161 WAQSWMLCRVGCLLFERRDFEA 226
           W ++  L ++GC+LFER+D++A
Sbjct: 406 WQKALSLHQMGCVLFERKDYKA 427


>sp|Q9N0C7|EPDR1_MACFA Mammalian ependymin-related protein 1
           OS=Macaca fascicularis GN=EPDR1 PE=2 SV=3
          Length = 224

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 18  DWTDR*DGGCEYSSWIEVYTVKNC 89
           +W+DR      Y +WI +YTVK+C
Sbjct: 150 EWSDR-KSARSYETWIGIYTVKDC 172


>sp|Q9UM22|EPDR1_HUMAN Mammalian ependymin-related protein 1 OS=Homo
           sapiens GN=EPDR1 PE=2 SV=2
          Length = 224

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 18  DWTDR*DGGCEYSSWIEVYTVKNC 89
           +W+DR      Y +WI +YTVK+C
Sbjct: 150 EWSDR-KSARSYETWIGIYTVKDC 172


>sp|A6QLI0|EPDR1_BOVIN Mammalian ependymin-related protein 1 OS=Bos
           taurus GN=EPDR1 PE=2 SV=1
          Length = 236

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 18  DWTDR*DGGCEYSSWIEVYTVKNC 89
           +W+DR      Y +WI +YTVK+C
Sbjct: 162 EWSDR-KSARSYETWIGIYTVKDC 184


>sp|Q6MEP6|MURA_PARUW UDP-N-acetylglucosamine
           1-carboxyvinyltransferase OS=Protochlamydia amoebophila
           (strain UWE25) GN=murA PE=3 SV=1
          Length = 465

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 16  VIGRTDRTVVVSTAHGLKFTQSKIAYHSKEIPEL 117
           ++GRTD+ ++V TA G    Q  + +H + + +L
Sbjct: 103 LLGRTDQDIIVPTAGGCPIGQRPVDFHIQALEQL 136
tr_hit_id A7PE28
Definition tr|A7PE28|A7PE28_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera
Align length 71
Score (bit) 97.1
E-value 4.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919421|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_H09.
         (360 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PE28|A7PE28_VITVI Chromosome chr11 scaffold_13, whole genom...    97   4e-19
tr|A5B9N4|A5B9N4_VITVI Putative uncharacterized protein OS=Vitis...    97   4e-19
tr|A7P5Z1|A7P5Z1_VITVI Chromosome chr4 scaffold_6, whole genome ...    96   1e-18
tr|A8HZZ1|A8HZZ1_CHLRE Threonine synthase OS=Chlamydomonas reinh...    95   2e-18
tr|A9SSV5|A9SSV5_PHYPA Predicted protein OS=Physcomitrella paten...    92   1e-17
tr|Q9SSP5|Q9SSP5_ARATH Putative threonine synthase (Threonine sy...    91   4e-17
tr|A9S5B7|A9S5B7_PHYPA Predicted protein OS=Physcomitrella paten...    90   6e-17
tr|A9TLR9|A9TLR9_PHYPA Predicted protein OS=Physcomitrella paten...    89   8e-17
tr|Q6L4H5|Q6L4H5_ORYSJ Os05g0549700 protein OS=Oryza sativa subs...    88   2e-16
tr|B8AWH3|B8AWH3_ORYSI Putative uncharacterized protein OS=Oryza...    88   2e-16
tr|A6MZ97|A6MZ97_ORYSI Chloroplast threonine synthase (Fragment)...    88   2e-16
tr|A3B6I8|A3B6I8_ORYSJ Putative uncharacterized protein OS=Oryza...    88   2e-16
tr|Q8LJJ2|Q8LJJ2_ORYSJ cDNA clone:006-202-C12, full insert seque...    88   2e-16
tr|Q0JK67|Q0JK67_ORYSJ Os01g0693800 protein (Fragment) OS=Oryza ...    88   2e-16
tr|B8A807|B8A807_ORYSI Putative uncharacterized protein OS=Oryza...    88   2e-16
tr|B6TPP7|B6TPP7_MAIZE Threonine synthase OS=Zea mays PE=2 SV=1        88   2e-16
tr|A2ZWT5|A2ZWT5_ORYSJ Putative uncharacterized protein OS=Oryza...    88   2e-16
tr|B6THZ8|B6THZ8_MAIZE Threonine synthase OS=Zea mays PE=2 SV=1        87   5e-16
tr|A4RVS2|A4RVS2_OSTLU Predicted protein OS=Ostreococcus lucimar...    85   2e-15
tr|Q01B87|Q01B87_OSTTA THRC_SOLTU Threonine synthase, chloroplas...    81   2e-14
tr|Q2Q021|Q2Q021_SOYBN Threonine synthase OS=Glycine max PE=4 SV=1     74   4e-12
tr|Q2IIL2|Q2IIL2_ANADE L-threonine synthase OS=Anaeromyxobacter ...    64   5e-09
tr|B4UCV4|B4UCV4_ANASK Threonine synthase OS=Anaeromyxobacter sp...    64   5e-09
tr|B8J9E6|B8J9E6_9DELT Threonine synthase OS=Anaeromyxobacter de...    64   5e-09
tr|Q1D6W7|Q1D6W7_MYXXD Threonine synthase OS=Myxococcus xanthus ...    62   1e-08
tr|B0C422|B0C422_ACAM1 Threonine synthase OS=Acaryochloris marin...    62   2e-08
tr|A7HC35|A7HC35_ANADF Threonine synthase OS=Anaeromyxobacter sp...    61   3e-08
tr|Q7UK29|Q7UK29_RHOBA Threonine synthase OS=Rhodopirellula balt...    60   4e-08
tr|B4WTT5|B4WTT5_9SYNE Threonine synthase OS=Synechococcus sp. P...    59   9e-08
tr|Q08WE9|Q08WE9_STIAU Threonine synthase OS=Stigmatella auranti...    59   2e-07

>tr|A7PE28|A7PE28_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016507001
           PE=4 SV=1
          Length = 522

 Score = 97.1 bits (240), Expect = 4e-19
 Identities = 47/71 (66%), Positives = 56/71 (78%)
 Frame = +1

Query: 1   LREKNVIGRTDRTVVVSTAHGLKFTQSKIAYHSKEIPELQSKFANPPVDVKANLGSVMDA 180
           LR   VIG TDRTVVVSTAHGLKFTQSK+ YHSK+IP+L  +FANPPV+VKA+ G+V+D 
Sbjct: 451 LRNSGVIGPTDRTVVVSTAHGLKFTQSKVDYHSKKIPDLACRFANPPVEVKADFGAVIDV 510

Query: 181 LQSRLPSLREK 213
           L+  L S   K
Sbjct: 511 LKKHLSSKTRK 521


>tr|A5B9N4|A5B9N4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_009916 PE=4 SV=1
          Length = 431

 Score = 97.1 bits (240), Expect = 4e-19
 Identities = 47/71 (66%), Positives = 56/71 (78%)
 Frame = +1

Query: 1   LREKNVIGRTDRTVVVSTAHGLKFTQSKIAYHSKEIPELQSKFANPPVDVKANLGSVMDA 180
           LR   VIG TDRTVVVSTAHGLKFTQSK+ YHSK+IP+L  +FANPPV+VKA+ G+V+D 
Sbjct: 360 LRNSGVIGPTDRTVVVSTAHGLKFTQSKVDYHSKKIPDLACRFANPPVEVKADFGAVIDV 419

Query: 181 LQSRLPSLREK 213
           L+  L S   K
Sbjct: 420 LKKHLSSKTRK 430


>tr|A7P5Z1|A7P5Z1_VITVI Chromosome chr4 scaffold_6, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032716001
           PE=4 SV=1
          Length = 522

 Score = 95.5 bits (236), Expect = 1e-18
 Identities = 48/67 (71%), Positives = 54/67 (80%)
 Frame = +1

Query: 1   LREKNVIGRTDRTVVVSTAHGLKFTQSKIAYHSKEIPELQSKFANPPVDVKANLGSVMDA 180
           LRE  VI  TDRTVVVSTAHGLKFTQSKI YHSK+IP++  +FANPPV VKA+ GSVMD 
Sbjct: 451 LRESGVIRPTDRTVVVSTAHGLKFTQSKIDYHSKDIPDIACRFANPPVQVKADFGSVMDV 510

Query: 181 LQSRLPS 201
           L+  L S
Sbjct: 511 LKKYLLS 517


>tr|A8HZZ1|A8HZZ1_CHLRE Threonine synthase OS=Chlamydomonas
           reinhardtii GN=THS1 PE=4 SV=1
          Length = 498

 Score = 95.1 bits (235), Expect = 2e-18
 Identities = 43/64 (67%), Positives = 56/64 (87%)
 Frame = +1

Query: 1   LREKNVIGRTDRTVVVSTAHGLKFTQSKIAYHSKEIPELQSKFANPPVDVKANLGSVMDA 180
           LRE+ VIG  DRTVVVSTAHGLKFTQSK+AYHSK++P +  +FANPPV V+ +LG+VMDA
Sbjct: 432 LRERQVIGPNDRTVVVSTAHGLKFTQSKVAYHSKQVPGMTCQFANPPVQVREDLGAVMDA 491

Query: 181 LQSR 192
           ++++
Sbjct: 492 IKTK 495


>tr|A9SSV5|A9SSV5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_134747 PE=4 SV=1
          Length = 477

 Score = 92.0 bits (227), Expect = 1e-17
 Identities = 44/72 (61%), Positives = 54/72 (75%)
 Frame = +1

Query: 1   LREKNVIGRTDRTVVVSTAHGLKFTQSKIAYHSKEIPELQSKFANPPVDVKANLGSVMDA 180
           LR + VIG  DRTVVVSTAHGLKFTQSK+ YHS E+P++ S+FANPPV V  + GS+MD 
Sbjct: 404 LRSRGVIGPNDRTVVVSTAHGLKFTQSKVEYHSSELPDIVSQFANPPVSVADDFGSIMDV 463

Query: 181 LQSRLPSLREKG 216
           L+ +L     KG
Sbjct: 464 LRQKLSLNNLKG 475


>tr|Q9SSP5|Q9SSP5_ARATH Putative threonine synthase (Threonine
           synthase, putative) OS=Arabidopsis thaliana GN=At1g72810
           PE=2 SV=1
          Length = 516

 Score = 90.5 bits (223), Expect = 4e-17
 Identities = 46/67 (68%), Positives = 50/67 (74%)
 Frame = +1

Query: 1   LREKNVIGRTDRTVVVSTAHGLKFTQSKIAYHSKEIPELQSKFANPPVDVKANLGSVMDA 180
           LR+  VIG  DRTVVVSTAHGLKFTQSKI YHSK I E+  + ANPPV VKA  GSVMD 
Sbjct: 447 LRKSGVIGANDRTVVVSTAHGLKFTQSKIDYHSKNIKEMACRLANPPVKVKAKFGSVMDV 506

Query: 181 LQSRLPS 201
           L+  L S
Sbjct: 507 LKEYLKS 513


>tr|A9S5B7|A9S5B7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_124325 PE=4 SV=1
          Length = 514

 Score = 89.7 bits (221), Expect = 6e-17
 Identities = 41/65 (63%), Positives = 52/65 (80%)
 Frame = +1

Query: 1   LREKNVIGRTDRTVVVSTAHGLKFTQSKIAYHSKEIPELQSKFANPPVDVKANLGSVMDA 180
           LR++ VIGR DRTVVVSTAHGLKFTQSK+ YHS  +P + S+FANPP+ V  +L S+MD 
Sbjct: 447 LRQRGVIGRNDRTVVVSTAHGLKFTQSKVEYHSSGLPAITSQFANPPISVADDLDSIMDV 506

Query: 181 LQSRL 195
           L+ +L
Sbjct: 507 LRQKL 511


>tr|A9TLR9|A9TLR9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_147479 PE=4 SV=1
          Length = 472

 Score = 89.4 bits (220), Expect = 8e-17
 Identities = 41/65 (63%), Positives = 51/65 (78%)
 Frame = +1

Query: 1   LREKNVIGRTDRTVVVSTAHGLKFTQSKIAYHSKEIPELQSKFANPPVDVKANLGSVMDA 180
           LR   VIG  DRTVVVSTAHGLKFTQSK+ YHS E+P++ S+FANPP+ V  + GS+MD 
Sbjct: 404 LRASGVIGPHDRTVVVSTAHGLKFTQSKVEYHSSELPDITSQFANPPISVADDFGSIMDV 463

Query: 181 LQSRL 195
           L+ +L
Sbjct: 464 LRQKL 468


>tr|Q6L4H5|Q6L4H5_ORYSJ Os05g0549700 protein OS=Oryza sativa subsp.
           japonica GN=P0560C03.1 PE=4 SV=1
          Length = 521

 Score = 88.2 bits (217), Expect = 2e-16
 Identities = 41/65 (63%), Positives = 52/65 (80%)
 Frame = +1

Query: 1   LREKNVIGRTDRTVVVSTAHGLKFTQSKIAYHSKEIPELQSKFANPPVDVKANLGSVMDA 180
           LR++ +IG  DRTVVVSTAHGLKF+QSKI YH  +I ++  K+ANPPV VKA+ G+VMD 
Sbjct: 453 LRDQRIIGPNDRTVVVSTAHGLKFSQSKIDYHDSKIEDMACKYANPPVSVKADFGAVMDV 512

Query: 181 LQSRL 195
           L+ RL
Sbjct: 513 LKKRL 517


>tr|B8AWH3|B8AWH3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_20875 PE=4 SV=1
          Length = 410

 Score = 88.2 bits (217), Expect = 2e-16
 Identities = 41/65 (63%), Positives = 52/65 (80%)
 Frame = +1

Query: 1   LREKNVIGRTDRTVVVSTAHGLKFTQSKIAYHSKEIPELQSKFANPPVDVKANLGSVMDA 180
           LR++ +IG  DRTVVVSTAHGLKF+QSKI YH  +I ++  K+ANPPV VKA+ G+VMD 
Sbjct: 342 LRDQRIIGPNDRTVVVSTAHGLKFSQSKIDYHDSKIEDMACKYANPPVSVKADFGAVMDV 401

Query: 181 LQSRL 195
           L+ RL
Sbjct: 402 LKKRL 406