BP919425
Clone id YMU001_000125_A02
Library
Length 523
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000125_A02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TTGTGACATAATCAAATATCTAGGATTCTTGTTCAGCCATCTCTTTCTCCACTTGGGGTG
GACTTCTTCTGTGCCTTATGCCTGCATATCTTTGTATAATCTTTCCTTGACCTATAAAAG
CTCTACCTTGATCAAAGGATATGGAAATGATTGTTGATGCCATTTTGCATTGATTTGGCT
GGGAGTGAGTTGAGTGACGTTGACTAAATGGAGAACTCTCAACTCCCAATCCATCATTGC
TTTCCATTGTTCATCTATCTCCTAAGCAACCTGCTCCTTGAGTGCATCTTCTTCAGCTTT
AGATAGCTGGACCATTGACACTTGCTCATCATCTGTTAGTGGTACCTGGAAATCTTCCTC
TCCTCCTAGCCCTTCTGCCGGCTGTGTTTCCATCGCAACAAAAGAGACTGAGGGAATTTC
AATGCTTTGTTGCTCTGAGGTACCAGCTTCTTCTTGCATCTTTGGTTGTCTATCTCGCAG
CAGCTAATTGACTCTCTTTAGCTCGGCTATCACCTTGAGCAGC
■■Homology search results ■■ -
sp_hit_id Q5XIP4
Definition sp|Q5XIP4|UBQLN_RAT Ubiquilin-like protein OS=Rattus norvegicus
Align length 95
Score (bit) 33.1
E-value 0.82
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919425|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_A02.
(523 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q5XIP4|UBQLN_RAT Ubiquilin-like protein OS=Rattus norvegicus ... 33 0.82
sp|Q9H2G2|SLK_HUMAN STE20-like serine/threonine-protein kinase O... 32 1.8
sp|Q9UBK8|MTRR_HUMAN Methionine synthase reductase, mitochondria... 32 1.8
sp|Q20060|SMC4_CAEEL Structural maintenance of chromosomes prote... 32 2.4
sp|A9HRV7|TIG_GLUDA Trigger factor OS=Gluconacetobacter diazotro... 31 3.1
sp|Q6VMQ6|MCAF1_HUMAN Activating transcription factor 7-interact... 30 5.3
sp|O14164|EIF3C_SCHPO Eukaryotic translation initiation factor 3... 30 5.3
sp|P51612|XPC_MOUSE DNA repair protein complementing XP-C cells ... 30 7.0
sp|Q2HJ56|PWP1_BOVIN Periodic tryptophan protein 1 homolog OS=Bo... 30 7.0
sp|Q5WEN8|TIG_BACSK Trigger factor OS=Bacillus clausii (strain K... 30 9.1
sp|Q6BKZ4|MED7_DEBHA Mediator of RNA polymerase II transcription... 30 9.1
sp|P74876|DPO3X_SALTY DNA polymerase III subunit tau OS=Salmonel... 30 9.1

>sp|Q5XIP4|UBQLN_RAT Ubiquilin-like protein OS=Rattus norvegicus
GN=Ubqlnl PE=2 SV=1
Length = 612

Score = 33.1 bits (74), Expect = 0.82
Identities = 25/95 (26%), Positives = 44/95 (46%)
Frame = -2

Query: 432 QQSIEIPSVSFVAMETQPAEGLGGEEDFQVPLTDDEQVSMVQLSKAEEDALKEQVA*EID 253
QQ EIPS+ + + +P EG ++D +P Q L ++EE + Q+ +
Sbjct: 372 QQPTEIPSLCTIPVIQEPREG---DKDTTIPQGSSAQWLEEDLQQSEEQS-SSQITRSMI 427

Query: 252 EQWKAMMDWELRVLHLVNVTQLTPSQINAKWHQQS 148
+ + +L L+N P Q+N +W QQ+
Sbjct: 428 QLLRTHPHMAAEMLLLLN-----PPQLNEQWRQQT 457


>sp|Q9H2G2|SLK_HUMAN STE20-like serine/threonine-protein kinase
OS=Homo sapiens GN=SLK PE=1 SV=1
Length = 1235

Score = 32.0 bits (71), Expect = 1.8
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Frame = -2

Query: 477 RDRQPKMQEEAGTSEQQSIEIPSVS-------FVAMETQPAEGLGGEEDFQVPLTDDEQV 319
R+++PK++ T +Q++++I SVS + +ET L EE+ D E+
Sbjct: 424 REKRPKLENLPDTEDQETVDINSVSEGKENNIMITLETNIEHNLKSEEE-----KDQEKQ 478

Query: 318 SMVQLSKAEEDALKEQVA*EID 253
M + + + +K+ + +D
Sbjct: 479 QMFENKLIKSEEIKDTILQTVD 500


>sp|Q9UBK8|MTRR_HUMAN Methionine synthase reductase, mitochondrial
OS=Homo sapiens GN=MTRR PE=1 SV=2
Length = 725

Score = 32.0 bits (71), Expect = 1.8
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = -2

Query: 489 N*LLRDRQPKMQEEAGTSEQQSIEIPSVSFVAMETQPAEGLGGEEDFQVPLTDDEQVSMV 310
N ++ D + + Q S+ IP + ++ E LG EE QV +T + V V
Sbjct: 245 NVVIEDFESSLTRSVPPLSQASLNIPGLPPEYLQVHLQESLGQEES-QVSVTSADPVFQV 303

Query: 309 QLSKAEE----DALKEQVA*EID 253
+SKA + DA+K + E+D
Sbjct: 304 PISKAVQLTTNDAIKTTLLVELD 326


>sp|Q20060|SMC4_CAEEL Structural maintenance of chromosomes protein 4
OS=Caenorhabditis elegans GN=smc-4 PE=1 SV=1
Length = 1549

Score = 31.6 bits (70), Expect = 2.4
Identities = 22/82 (26%), Positives = 37/82 (45%)
Frame = -2

Query: 474 DRQPKMQEEAGTSEQQSIEIPSVSFVAMETQPAEGLGGEEDFQVPLTDDEQVSMVQLSKA 295
+RQ K + ++E V T+ E + GE+ V L DE+++ + A
Sbjct: 1095 ERQKKHMACVMSDAAYALEFEMRQKVLENTESYENVDGEDRVPVELLSDEKINEISSRDA 1154

Query: 294 EEDALKEQVA*EIDEQWKAMMD 229
EE +K +V + E KA +D
Sbjct: 1155 EEMQMKLKVCEQQVEALKAKVD 1176


>sp|A9HRV7|TIG_GLUDA Trigger factor OS=Gluconacetobacter
diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)
GN=tig PE=3 SV=1
Length = 445

Score = 31.2 bits (69), Expect = 3.1
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Frame = -2

Query: 450 EAGTSEQQSIEIPSVSFVAMETQPAEGLGGEEDFQVPLTDDEQVSMVQLSKAE------E 289
E GT++ ++E+ F+ + EG+ E+ + +T S L+ E
Sbjct: 183 EGGTAQDVNVELGGAGFIPGFAEQIEGMSPGEEKVITVTFPADYSAENLAGKEATFDITA 242

Query: 288 DALKEQVA*EIDEQWKAMMDWELRVLHLVNVTQLTPSQINAKWHQQS 148
ALK V EID++ + +E L V +L Q+ ++ Q S
Sbjct: 243 KALKRPVDVEIDDEMAKKIGFE----GLEQVRELITRQVEQEYEQLS 285


>sp|Q6VMQ6|MCAF1_HUMAN Activating transcription factor 7-interacting
protein 1 OS=Homo sapiens GN=ATF7IP PE=1 SV=2
Length = 1270

Score = 30.4 bits (67), Expect = 5.3
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Frame = -2

Query: 474 DRQPKMQEEAGT-SEQQSIE-IPSVSFVAMETQPAEGLGGEEDFQVPLTDDEQVSMVQLS 301
D + KM+ G+ S+Q+S E +P +F+ + + E + GE+D ++ +E S ++
Sbjct: 466 DLEEKMESSFGSPSKQESSESLPKEAFLVLSDE--EDISGEKDESEVISQNETCSPAEVE 523

Query: 300 KAEED---ALKEQVA*EIDEQ 247
E+D +EQV E DE+
Sbjct: 524 SNEKDNRPEEEEQVIHEDDER 544


>sp|O14164|EIF3C_SCHPO Eukaryotic translation initiation factor 3
subunit C OS=Schizosaccharomyces pombe GN=nip1 PE=1 SV=2
Length = 918

Score = 30.4 bits (67), Expect = 5.3
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -2

Query: 468 QPKMQEEAGTSEQQSIEIPSVSFVAM-ETQPAEGLGGEEDFQVPLTDDEQVSMVQLSKAE 292
+ + EE SE+ +E+P VA E ++ EE+ + +D +VS S++E
Sbjct: 52 ESESSEEESESEESEVEVPKKKAVAASEDSESDSESSEEEEETESEEDSEVSDESESESE 111

Query: 291 EDALKEQ 271
++ E+
Sbjct: 112 SESESEE 118


>sp|P51612|XPC_MOUSE DNA repair protein complementing XP-C cells
homolog OS=Mus musculus GN=Xpc PE=1 SV=2
Length = 930

Score = 30.0 bits (66), Expect = 7.0
Identities = 23/72 (31%), Positives = 34/72 (47%)
Frame = -1

Query: 241 SNDGLGVESSPFSQRHSTHSQPNQCKMASTIISISFDQGRAFIGQGKIIQRYAGIRHRRS 62
S +G G S S +H++P + ++S +G+A +GK AG R RR
Sbjct: 335 SVEGPGGSSELSSNSPESHNKPTTSRRIKEEETLSEGRGKA-TARGKRGTGTAGSRQRRK 393

Query: 61 PPQVEKEMAEQE 26
P E E AEQ+
Sbjct: 394 PSCSEGEEAEQK 405


>sp|Q2HJ56|PWP1_BOVIN Periodic tryptophan protein 1 homolog OS=Bos
taurus GN=PWP1 PE=2 SV=1
Length = 500

Score = 30.0 bits (66), Expect = 7.0
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = -2

Query: 516 KVIAELKRVN*LLRDRQPKMQEEAGTSEQQSIEIPSVSFVAMETQ--PAEGLGGEEDFQV 343
KV + V L+ + + K+QEE G+ EQ++ + TQ P E L +
Sbjct: 24 KVELSKEEVKRLIAEAKEKLQEEGGSDEQETGNPSEDGMQSARTQARPREPLEDGDPEDD 83

Query: 342 PLTDDEQVSMVQLSKAEED 286
DD++++ L K +E+
Sbjct: 84 RTLDDDELAEYDLDKYDEE 102


>sp|Q5WEN8|TIG_BACSK Trigger factor OS=Bacillus clausii (strain
KSM-K16) GN=tig PE=3 SV=1
Length = 434

Score = 29.6 bits (65), Expect = 9.1
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Frame = -2

Query: 450 EAGTSEQQSIEIPSVSFVAMETQPAEGLGGEEDFQVPLTDDEQVSMVQLS------KAEE 289
E GT+E S+EI S SF+ + GL E+ V +T E+ +L+ K +
Sbjct: 180 EGGTAENYSLEIGSNSFIPGFEEQLVGLKSGEEKDVEVTFPEEYHAEELAGKPATFKVKV 239

Query: 288 DALKEQVA*EIDEQW 244
+K + E+D+++
Sbjct: 240 HDIKRKELPELDDEF 254


tr_hit_id Q6NRG0
Definition tr|Q6NRG0|Q6NRG0_XENLA Rnf8-b-prov protein OS=Xenopus laevis
Align length 104
Score (bit) 39.7
E-value 0.092
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919425|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_A02.
(523 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q6NRG0|Q6NRG0_XENLA Rnf8-b-prov protein OS=Xenopus laevis GN=... 40 0.092
tr|Q7ZX20|Q7ZX20_XENLA Rnf8-prov protein OS=Xenopus laevis PE=2 ... 38 0.35
tr|Q6C4Q0|Q6C4Q0_YARLI YALI0E24651p OS=Yarrowia lipolytica GN=YA... 36 1.3
tr|A7F5B4|A7F5B4_SCLS1 Putative uncharacterized protein OS=Scler... 36 1.3
tr|A6R6I1|A6R6I1_AJECN Putative uncharacterized protein OS=Ajell... 36 1.3
tr|A8LD21|A8LD21_FRASN Radical SAM domain protein OS=Frankia sp.... 34 3.9
tr|B2W994|B2W994_PYRTR Putative uncharacterized protein OS=Pyren... 34 5.1
tr|B4IBV8|B4IBV8_DROSE GM15432 OS=Drosophila sechellia GN=GM1543... 33 8.6
tr|B4HW23|B4HW23_DROSE GM14158 OS=Drosophila sechellia GN=GM1415... 33 8.6

>tr|Q6NRG0|Q6NRG0_XENLA Rnf8-b-prov protein OS=Xenopus laevis
GN=rnf8-b-prov PE=2 SV=1
Length = 532

Score = 39.7 bits (91), Expect = 0.092
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Frame = -2

Query: 516 KVIAELKRVN*LLRDRQPKMQEEAGTSEQQSIEIPSVSFVAMETQPAEG-LGGEEDFQVP 340
+ + E++R+N ++++Q KMQE+ ++ + S V E Q L E++ +
Sbjct: 224 ETMEEIRRLNVQIQEKQIKMQEKLNHPQESQLGSNSYLVVQKELQALRNQLSNEQEQHLQ 283

Query: 339 -------LTDDEQVSMVQLSKAEEDALKEQVA*EIDEQWKAMMD 229
+ +EQ SM +AEE+ LKEQ+A + E + M +
Sbjct: 284 SVKELKEIFQEEQQSMGSQKQAEEEHLKEQLAQALQEHTQLMQE 327


>tr|Q7ZX20|Q7ZX20_XENLA Rnf8-prov protein OS=Xenopus laevis PE=2
SV=1
Length = 540

Score = 37.7 bits (86), Expect = 0.35
Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Frame = -2

Query: 516 KVIAELKRVN*LLRDRQPKMQEEAGTSEQQSIEIPSVSFVAMETQPAEG-LGGEEDFQVP 340
+ + E++R+N ++++Q +MQE+ + + + SV V E + L E++ +
Sbjct: 229 QTMEEIRRLNVQMQEKQMEMQEKLNSPLENQVGANSVLAVQKELRALHNHLSNEQEQHMQ 288

Query: 339 -------LTDDEQVSMVQLSKAEEDALKEQVA*EIDEQWKAMMD 229
+ ++EQ SM + EE+ LKEQ+A + E + M +
Sbjct: 289 SVKELKEIFEEEQQSMGSRKQVEEEHLKEQLAQALQEHTQLMQE 332


>tr|Q6C4Q0|Q6C4Q0_YARLI YALI0E24651p OS=Yarrowia lipolytica
GN=YALI0E24651g PE=4 SV=1
Length = 1219

Score = 35.8 bits (81), Expect = 1.3
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -2

Query: 468 QPKMQEEAGTSEQQSIEIPSVSFVA-METQPAEGLGGEEDFQVPLTDDEQVSMVQLSKAE 292
QP EEAG SEQ I V ++ M + + +E+ V TDD+ V + K +
Sbjct: 182 QPSNSEEAGPSEQPQFRIDKVKSISLMRARQSRAREAQEEETVASTDDDGVGNNDMFKID 241

Query: 291 EDA 283
+DA
Sbjct: 242 DDA 244


>tr|A7F5B4|A7F5B4_SCLS1 Putative uncharacterized protein
OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
Ss-1) GN=SS1G_12791 PE=4 SV=1
Length = 544

Score = 35.8 bits (81), Expect = 1.3
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 13/81 (16%)
Frame = -2

Query: 468 QPKMQEEAGT-SEQQSIEIPSVSFVAMETQPAEGLGGEE-DFQVPLTD-----------D 328
+P +Q EA SE Q +E+P E E +G E+ D +VP+ D D
Sbjct: 332 EPAVQSEAAAQSEDQEVEVP-------EEASEEKVGEEQVDSEVPVEDSKEEEEEVVSAD 384

Query: 327 EQVSMVQLSKAEEDALKEQVA 265
E S Q K E+DALKE A
Sbjct: 385 EASSASQEEKTEQDALKEDTA 405


>tr|A6R6I1|A6R6I1_AJECN Putative uncharacterized protein
OS=Ajellomyces capsulata (strain NAm1 / WU24)
GN=HCAG_05239 PE=4 SV=1
Length = 473

Score = 35.8 bits (81), Expect = 1.3
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = -2

Query: 441 TSEQQSIEIPSVSFVAMETQPAEGLGGEEDFQVPLTDDEQVSMVQLSK-AEEDALKEQVA 265
TS Q +E F+A E P GLGG +D++ + + Q+ A+ ALK++ A
Sbjct: 306 TSNYQELE----KFIAKEAIP-RGLGGSDDYEYKYIEPKAGENDQMKDTAKAAALKDERA 360

Query: 264 *EIDEQWKAMMDW 226
+DE KA +DW
Sbjct: 361 KIVDEFQKATLDW 373


>tr|A8LD21|A8LD21_FRASN Radical SAM domain protein OS=Frankia sp.
(strain EAN1pec) GN=Franean1_3102 PE=4 SV=1
Length = 487

Score = 34.3 bits (77), Expect = 3.9
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = -2

Query: 402 FVAMETQPAEGLGGEEDFQVPLTDDEQVSMVQLSKAEEDALKEQVA*E---IDEQWKAMM 232
F+ ME AEGL + F ++ DE + ++L++ + + + +Q++ +
Sbjct: 288 FLGMEALDAEGL---DLFHKRISPDENIKALELARKIGITVAVNLIADPAWSRDQFRLVR 344

Query: 231 DWELRVLHLVNVTQLTPSQINAKWHQQS 148
W L V +V++T +TP WH QS
Sbjct: 345 QWALSVPEIVHLTVMTPYPGTEIWHTQS 372


>tr|B2W994|B2W994_PYRTR Putative uncharacterized protein
OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP)
GN=PTRG_06552 PE=4 SV=1
Length = 466

Score = 33.9 bits (76), Expect = 5.1
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Frame = -2

Query: 474 DRQPKMQEEAGTSEQQSIEIPSVS------FVAMETQPAEGLGGEEDFQVPLTDDEQVSM 313
+++PK + A E+Q +E+ S ++A + AE GEED +TDDE+
Sbjct: 169 EKKPKNIKAAKAVEKQDVEMKEASDGEDDPYMAFSARIAEPSSGEEDSAASVTDDERPPS 228

Query: 312 VQLSKAEED 286
+ S+ + D
Sbjct: 229 IADSENDHD 237


>tr|B4IBV8|B4IBV8_DROSE GM15432 OS=Drosophila sechellia GN=GM15432
PE=4 SV=1
Length = 267

Score = 33.1 bits (74), Expect = 8.6
Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Frame = -2

Query: 456 QEEAGTSEQQSIEIPSV----SFVAMETQPAEGLGGEEDFQVPLTDDEQVSMVQLSKAEE 289
++EA ++ Q ++ + + +A++ + +G G + PLT D ++++ +L + E+
Sbjct: 21 EKEATSTRQSEKDVDEIVEKQNQLALDDEAEQGAAGGDSIATPLTVDSELTIEELREREK 80

Query: 288 DALKEQVA 265
D EQ+A
Sbjct: 81 DLSPEQLA 88


>tr|B4HW23|B4HW23_DROSE GM14158 OS=Drosophila sechellia GN=GM14158
PE=4 SV=1
Length = 430

Score = 33.1 bits (74), Expect = 8.6
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Frame = -2

Query: 225 ELRVLHLVNVTQLTPSQINAKWHQQS---------FPYPLIKVELL*VKERLYKDMQA*G 73
++R NV Q +P Q + QQ FPYP+++ +L + + KD+
Sbjct: 43 KIRGFEAFNVQQQSPQQPQQQQQQQEQQQPQQHGQFPYPVVRYPMLLLNKNKNKDLTVVA 102

Query: 72 TEEVHPKWR 46
T + KWR
Sbjct: 103 TGKTKNKWR 111