BP919425 |
Clone id |
YMU001_000125_A02 |
Library |
YMU01 |
Length |
523 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000125_A02. |
Accession |
BP919425 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
TTGTGACATAATCAAATATCTAGGATTCTTGTTCAGCCATCTCTTTCTCCACTTGGGGTG GACTTCTTCTGTGCCTTATGCCTGCATATCTTTGTATAATCTTTCCTTGACCTATAAAAG CTCTACCTTGATCAAAGGATATGGAAATGATTGTTGATGCCATTTTGCATTGATTTGGCT GGGAGTGAGTTGAGTGACGTTGACTAAATGGAGAACTCTCAACTCCCAATCCATCATTGC TTTCCATTGTTCATCTATCTCCTAAGCAACCTGCTCCTTGAGTGCATCTTCTTCAGCTTT AGATAGCTGGACCATTGACACTTGCTCATCATCTGTTAGTGGTACCTGGAAATCTTCCTC TCCTCCTAGCCCTTCTGCCGGCTGTGTTTCCATCGCAACAAAAGAGACTGAGGGAATTTC AATGCTTTGTTGCTCTGAGGTACCAGCTTCTTCTTGCATCTTTGGTTGTCTATCTCGCAG CAGCTAATTGACTCTCTTTAGCTCGGCTATCACCTTGAGCAGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5XIP4 |
Definition |
sp|Q5XIP4|UBQLN_RAT Ubiquilin-like protein OS=Rattus norvegicus |
Align length |
95 |
Score (bit) |
33.1 |
E-value |
0.82 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919425|Adiantum capillus-veneris mRNA, clone: YMU001_000125_A02. (523 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q5XIP4|UBQLN_RAT Ubiquilin-like protein OS=Rattus norvegicus ... 33 0.82 sp|Q9H2G2|SLK_HUMAN STE20-like serine/threonine-protein kinase O... 32 1.8 sp|Q9UBK8|MTRR_HUMAN Methionine synthase reductase, mitochondria... 32 1.8 sp|Q20060|SMC4_CAEEL Structural maintenance of chromosomes prote... 32 2.4 sp|A9HRV7|TIG_GLUDA Trigger factor OS=Gluconacetobacter diazotro... 31 3.1 sp|Q6VMQ6|MCAF1_HUMAN Activating transcription factor 7-interact... 30 5.3 sp|O14164|EIF3C_SCHPO Eukaryotic translation initiation factor 3... 30 5.3 sp|P51612|XPC_MOUSE DNA repair protein complementing XP-C cells ... 30 7.0 sp|Q2HJ56|PWP1_BOVIN Periodic tryptophan protein 1 homolog OS=Bo... 30 7.0 sp|Q5WEN8|TIG_BACSK Trigger factor OS=Bacillus clausii (strain K... 30 9.1 sp|Q6BKZ4|MED7_DEBHA Mediator of RNA polymerase II transcription... 30 9.1 sp|P74876|DPO3X_SALTY DNA polymerase III subunit tau OS=Salmonel... 30 9.1
>sp|Q5XIP4|UBQLN_RAT Ubiquilin-like protein OS=Rattus norvegicus GN=Ubqlnl PE=2 SV=1 Length = 612
Score = 33.1 bits (74), Expect = 0.82 Identities = 25/95 (26%), Positives = 44/95 (46%) Frame = -2
Query: 432 QQSIEIPSVSFVAMETQPAEGLGGEEDFQVPLTDDEQVSMVQLSKAEEDALKEQVA*EID 253 QQ EIPS+ + + +P EG ++D +P Q L ++EE + Q+ + Sbjct: 372 QQPTEIPSLCTIPVIQEPREG---DKDTTIPQGSSAQWLEEDLQQSEEQS-SSQITRSMI 427
Query: 252 EQWKAMMDWELRVLHLVNVTQLTPSQINAKWHQQS 148 + + +L L+N P Q+N +W QQ+ Sbjct: 428 QLLRTHPHMAAEMLLLLN-----PPQLNEQWRQQT 457
>sp|Q9H2G2|SLK_HUMAN STE20-like serine/threonine-protein kinase OS=Homo sapiens GN=SLK PE=1 SV=1 Length = 1235
Score = 32.0 bits (71), Expect = 1.8 Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 7/82 (8%) Frame = -2
Query: 477 RDRQPKMQEEAGTSEQQSIEIPSVS-------FVAMETQPAEGLGGEEDFQVPLTDDEQV 319 R+++PK++ T +Q++++I SVS + +ET L EE+ D E+ Sbjct: 424 REKRPKLENLPDTEDQETVDINSVSEGKENNIMITLETNIEHNLKSEEE-----KDQEKQ 478
Query: 318 SMVQLSKAEEDALKEQVA*EID 253 M + + + +K+ + +D Sbjct: 479 QMFENKLIKSEEIKDTILQTVD 500
>sp|Q9UBK8|MTRR_HUMAN Methionine synthase reductase, mitochondrial OS=Homo sapiens GN=MTRR PE=1 SV=2 Length = 725
Score = 32.0 bits (71), Expect = 1.8 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 4/83 (4%) Frame = -2
Query: 489 N*LLRDRQPKMQEEAGTSEQQSIEIPSVSFVAMETQPAEGLGGEEDFQVPLTDDEQVSMV 310 N ++ D + + Q S+ IP + ++ E LG EE QV +T + V V Sbjct: 245 NVVIEDFESSLTRSVPPLSQASLNIPGLPPEYLQVHLQESLGQEES-QVSVTSADPVFQV 303
Query: 309 QLSKAEE----DALKEQVA*EID 253 +SKA + DA+K + E+D Sbjct: 304 PISKAVQLTTNDAIKTTLLVELD 326
>sp|Q20060|SMC4_CAEEL Structural maintenance of chromosomes protein 4 OS=Caenorhabditis elegans GN=smc-4 PE=1 SV=1 Length = 1549
Score = 31.6 bits (70), Expect = 2.4 Identities = 22/82 (26%), Positives = 37/82 (45%) Frame = -2
Query: 474 DRQPKMQEEAGTSEQQSIEIPSVSFVAMETQPAEGLGGEEDFQVPLTDDEQVSMVQLSKA 295 +RQ K + ++E V T+ E + GE+ V L DE+++ + A Sbjct: 1095 ERQKKHMACVMSDAAYALEFEMRQKVLENTESYENVDGEDRVPVELLSDEKINEISSRDA 1154
Query: 294 EEDALKEQVA*EIDEQWKAMMD 229 EE +K +V + E KA +D Sbjct: 1155 EEMQMKLKVCEQQVEALKAKVD 1176
>sp|A9HRV7|TIG_GLUDA Trigger factor OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=tig PE=3 SV=1 Length = 445
Score = 31.2 bits (69), Expect = 3.1 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 6/107 (5%) Frame = -2
Query: 450 EAGTSEQQSIEIPSVSFVAMETQPAEGLGGEEDFQVPLTDDEQVSMVQLSKAE------E 289 E GT++ ++E+ F+ + EG+ E+ + +T S L+ E Sbjct: 183 EGGTAQDVNVELGGAGFIPGFAEQIEGMSPGEEKVITVTFPADYSAENLAGKEATFDITA 242
Query: 288 DALKEQVA*EIDEQWKAMMDWELRVLHLVNVTQLTPSQINAKWHQQS 148 ALK V EID++ + +E L V +L Q+ ++ Q S Sbjct: 243 KALKRPVDVEIDDEMAKKIGFE----GLEQVRELITRQVEQEYEQLS 285
>sp|Q6VMQ6|MCAF1_HUMAN Activating transcription factor 7-interacting protein 1 OS=Homo sapiens GN=ATF7IP PE=1 SV=2 Length = 1270
Score = 30.4 bits (67), Expect = 5.3 Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 5/81 (6%) Frame = -2
Query: 474 DRQPKMQEEAGT-SEQQSIE-IPSVSFVAMETQPAEGLGGEEDFQVPLTDDEQVSMVQLS 301 D + KM+ G+ S+Q+S E +P +F+ + + E + GE+D ++ +E S ++ Sbjct: 466 DLEEKMESSFGSPSKQESSESLPKEAFLVLSDE--EDISGEKDESEVISQNETCSPAEVE 523
Query: 300 KAEED---ALKEQVA*EIDEQ 247 E+D +EQV E DE+ Sbjct: 524 SNEKDNRPEEEEQVIHEDDER 544
>sp|O14164|EIF3C_SCHPO Eukaryotic translation initiation factor 3 subunit C OS=Schizosaccharomyces pombe GN=nip1 PE=1 SV=2 Length = 918
Score = 30.4 bits (67), Expect = 5.3 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Frame = -2
Query: 468 QPKMQEEAGTSEQQSIEIPSVSFVAM-ETQPAEGLGGEEDFQVPLTDDEQVSMVQLSKAE 292 + + EE SE+ +E+P VA E ++ EE+ + +D +VS S++E Sbjct: 52 ESESSEEESESEESEVEVPKKKAVAASEDSESDSESSEEEEETESEEDSEVSDESESESE 111
Query: 291 EDALKEQ 271 ++ E+ Sbjct: 112 SESESEE 118
>sp|P51612|XPC_MOUSE DNA repair protein complementing XP-C cells homolog OS=Mus musculus GN=Xpc PE=1 SV=2 Length = 930
Score = 30.0 bits (66), Expect = 7.0 Identities = 23/72 (31%), Positives = 34/72 (47%) Frame = -1
Query: 241 SNDGLGVESSPFSQRHSTHSQPNQCKMASTIISISFDQGRAFIGQGKIIQRYAGIRHRRS 62 S +G G S S +H++P + ++S +G+A +GK AG R RR Sbjct: 335 SVEGPGGSSELSSNSPESHNKPTTSRRIKEEETLSEGRGKA-TARGKRGTGTAGSRQRRK 393
Query: 61 PPQVEKEMAEQE 26 P E E AEQ+ Sbjct: 394 PSCSEGEEAEQK 405
>sp|Q2HJ56|PWP1_BOVIN Periodic tryptophan protein 1 homolog OS=Bos taurus GN=PWP1 PE=2 SV=1 Length = 500
Score = 30.0 bits (66), Expect = 7.0 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 2/79 (2%) Frame = -2
Query: 516 KVIAELKRVN*LLRDRQPKMQEEAGTSEQQSIEIPSVSFVAMETQ--PAEGLGGEEDFQV 343 KV + V L+ + + K+QEE G+ EQ++ + TQ P E L + Sbjct: 24 KVELSKEEVKRLIAEAKEKLQEEGGSDEQETGNPSEDGMQSARTQARPREPLEDGDPEDD 83
Query: 342 PLTDDEQVSMVQLSKAEED 286 DD++++ L K +E+ Sbjct: 84 RTLDDDELAEYDLDKYDEE 102
>sp|Q5WEN8|TIG_BACSK Trigger factor OS=Bacillus clausii (strain KSM-K16) GN=tig PE=3 SV=1 Length = 434
Score = 29.6 bits (65), Expect = 9.1 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 6/75 (8%) Frame = -2
Query: 450 EAGTSEQQSIEIPSVSFVAMETQPAEGLGGEEDFQVPLTDDEQVSMVQLS------KAEE 289 E GT+E S+EI S SF+ + GL E+ V +T E+ +L+ K + Sbjct: 180 EGGTAENYSLEIGSNSFIPGFEEQLVGLKSGEEKDVEVTFPEEYHAEELAGKPATFKVKV 239
Query: 288 DALKEQVA*EIDEQW 244 +K + E+D+++ Sbjct: 240 HDIKRKELPELDDEF 254
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q6NRG0 |
Definition |
tr|Q6NRG0|Q6NRG0_XENLA Rnf8-b-prov protein OS=Xenopus laevis |
Align length |
104 |
Score (bit) |
39.7 |
E-value |
0.092 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919425|Adiantum capillus-veneris mRNA, clone: YMU001_000125_A02. (523 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q6NRG0|Q6NRG0_XENLA Rnf8-b-prov protein OS=Xenopus laevis GN=... 40 0.092 tr|Q7ZX20|Q7ZX20_XENLA Rnf8-prov protein OS=Xenopus laevis PE=2 ... 38 0.35 tr|Q6C4Q0|Q6C4Q0_YARLI YALI0E24651p OS=Yarrowia lipolytica GN=YA... 36 1.3 tr|A7F5B4|A7F5B4_SCLS1 Putative uncharacterized protein OS=Scler... 36 1.3 tr|A6R6I1|A6R6I1_AJECN Putative uncharacterized protein OS=Ajell... 36 1.3 tr|A8LD21|A8LD21_FRASN Radical SAM domain protein OS=Frankia sp.... 34 3.9 tr|B2W994|B2W994_PYRTR Putative uncharacterized protein OS=Pyren... 34 5.1 tr|B4IBV8|B4IBV8_DROSE GM15432 OS=Drosophila sechellia GN=GM1543... 33 8.6 tr|B4HW23|B4HW23_DROSE GM14158 OS=Drosophila sechellia GN=GM1415... 33 8.6
>tr|Q6NRG0|Q6NRG0_XENLA Rnf8-b-prov protein OS=Xenopus laevis GN=rnf8-b-prov PE=2 SV=1 Length = 532
Score = 39.7 bits (91), Expect = 0.092 Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 8/104 (7%) Frame = -2
Query: 516 KVIAELKRVN*LLRDRQPKMQEEAGTSEQQSIEIPSVSFVAMETQPAEG-LGGEEDFQVP 340 + + E++R+N ++++Q KMQE+ ++ + S V E Q L E++ + Sbjct: 224 ETMEEIRRLNVQIQEKQIKMQEKLNHPQESQLGSNSYLVVQKELQALRNQLSNEQEQHLQ 283
Query: 339 -------LTDDEQVSMVQLSKAEEDALKEQVA*EIDEQWKAMMD 229 + +EQ SM +AEE+ LKEQ+A + E + M + Sbjct: 284 SVKELKEIFQEEQQSMGSQKQAEEEHLKEQLAQALQEHTQLMQE 327
>tr|Q7ZX20|Q7ZX20_XENLA Rnf8-prov protein OS=Xenopus laevis PE=2 SV=1 Length = 540
Score = 37.7 bits (86), Expect = 0.35 Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 8/104 (7%) Frame = -2
Query: 516 KVIAELKRVN*LLRDRQPKMQEEAGTSEQQSIEIPSVSFVAMETQPAEG-LGGEEDFQVP 340 + + E++R+N ++++Q +MQE+ + + + SV V E + L E++ + Sbjct: 229 QTMEEIRRLNVQMQEKQMEMQEKLNSPLENQVGANSVLAVQKELRALHNHLSNEQEQHMQ 288
Query: 339 -------LTDDEQVSMVQLSKAEEDALKEQVA*EIDEQWKAMMD 229 + ++EQ SM + EE+ LKEQ+A + E + M + Sbjct: 289 SVKELKEIFEEEQQSMGSRKQVEEEHLKEQLAQALQEHTQLMQE 332
>tr|Q6C4Q0|Q6C4Q0_YARLI YALI0E24651p OS=Yarrowia lipolytica GN=YALI0E24651g PE=4 SV=1 Length = 1219
Score = 35.8 bits (81), Expect = 1.3 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = -2
Query: 468 QPKMQEEAGTSEQQSIEIPSVSFVA-METQPAEGLGGEEDFQVPLTDDEQVSMVQLSKAE 292 QP EEAG SEQ I V ++ M + + +E+ V TDD+ V + K + Sbjct: 182 QPSNSEEAGPSEQPQFRIDKVKSISLMRARQSRAREAQEEETVASTDDDGVGNNDMFKID 241
Query: 291 EDA 283 +DA Sbjct: 242 DDA 244
>tr|A7F5B4|A7F5B4_SCLS1 Putative uncharacterized protein OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=SS1G_12791 PE=4 SV=1 Length = 544
Score = 35.8 bits (81), Expect = 1.3 Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 13/81 (16%) Frame = -2
Query: 468 QPKMQEEAGT-SEQQSIEIPSVSFVAMETQPAEGLGGEE-DFQVPLTD-----------D 328 +P +Q EA SE Q +E+P E E +G E+ D +VP+ D D Sbjct: 332 EPAVQSEAAAQSEDQEVEVP-------EEASEEKVGEEQVDSEVPVEDSKEEEEEVVSAD 384
Query: 327 EQVSMVQLSKAEEDALKEQVA 265 E S Q K E+DALKE A Sbjct: 385 EASSASQEEKTEQDALKEDTA 405
>tr|A6R6I1|A6R6I1_AJECN Putative uncharacterized protein OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=HCAG_05239 PE=4 SV=1 Length = 473
Score = 35.8 bits (81), Expect = 1.3 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Frame = -2
Query: 441 TSEQQSIEIPSVSFVAMETQPAEGLGGEEDFQVPLTDDEQVSMVQLSK-AEEDALKEQVA 265 TS Q +E F+A E P GLGG +D++ + + Q+ A+ ALK++ A Sbjct: 306 TSNYQELE----KFIAKEAIP-RGLGGSDDYEYKYIEPKAGENDQMKDTAKAAALKDERA 360
Query: 264 *EIDEQWKAMMDW 226 +DE KA +DW Sbjct: 361 KIVDEFQKATLDW 373
>tr|A8LD21|A8LD21_FRASN Radical SAM domain protein OS=Frankia sp. (strain EAN1pec) GN=Franean1_3102 PE=4 SV=1 Length = 487
Score = 34.3 bits (77), Expect = 3.9 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 3/88 (3%) Frame = -2
Query: 402 FVAMETQPAEGLGGEEDFQVPLTDDEQVSMVQLSKAEEDALKEQVA*E---IDEQWKAMM 232 F+ ME AEGL + F ++ DE + ++L++ + + + +Q++ + Sbjct: 288 FLGMEALDAEGL---DLFHKRISPDENIKALELARKIGITVAVNLIADPAWSRDQFRLVR 344
Query: 231 DWELRVLHLVNVTQLTPSQINAKWHQQS 148 W L V +V++T +TP WH QS Sbjct: 345 QWALSVPEIVHLTVMTPYPGTEIWHTQS 372
>tr|B2W994|B2W994_PYRTR Putative uncharacterized protein OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP) GN=PTRG_06552 PE=4 SV=1 Length = 466
Score = 33.9 bits (76), Expect = 5.1 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 6/69 (8%) Frame = -2
Query: 474 DRQPKMQEEAGTSEQQSIEIPSVS------FVAMETQPAEGLGGEEDFQVPLTDDEQVSM 313 +++PK + A E+Q +E+ S ++A + AE GEED +TDDE+ Sbjct: 169 EKKPKNIKAAKAVEKQDVEMKEASDGEDDPYMAFSARIAEPSSGEEDSAASVTDDERPPS 228
Query: 312 VQLSKAEED 286 + S+ + D Sbjct: 229 IADSENDHD 237
>tr|B4IBV8|B4IBV8_DROSE GM15432 OS=Drosophila sechellia GN=GM15432 PE=4 SV=1 Length = 267
Score = 33.1 bits (74), Expect = 8.6 Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 4/68 (5%) Frame = -2
Query: 456 QEEAGTSEQQSIEIPSV----SFVAMETQPAEGLGGEEDFQVPLTDDEQVSMVQLSKAEE 289 ++EA ++ Q ++ + + +A++ + +G G + PLT D ++++ +L + E+ Sbjct: 21 EKEATSTRQSEKDVDEIVEKQNQLALDDEAEQGAAGGDSIATPLTVDSELTIEELREREK 80
Query: 288 DALKEQVA 265 D EQ+A Sbjct: 81 DLSPEQLA 88
>tr|B4HW23|B4HW23_DROSE GM14158 OS=Drosophila sechellia GN=GM14158 PE=4 SV=1 Length = 430
Score = 33.1 bits (74), Expect = 8.6 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 9/69 (13%) Frame = -2
Query: 225 ELRVLHLVNVTQLTPSQINAKWHQQS---------FPYPLIKVELL*VKERLYKDMQA*G 73 ++R NV Q +P Q + QQ FPYP+++ +L + + KD+ Sbjct: 43 KIRGFEAFNVQQQSPQQPQQQQQQQEQQQPQQHGQFPYPVVRYPMLLLNKNKNKDLTVVA 102
Query: 72 TEEVHPKWR 46 T + KWR Sbjct: 103 TGKTKNKWR 111
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