BP919429 |
Clone id |
YMU001_000125_A06 |
Library |
YMU01 |
Length |
443 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000125_A06. |
Accession |
BP919429 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL1663Contig1 |
Sequence |
ATATCAACTGTCTCACCCATCTTAATCTTGCCTCTCTCCACCTTTCCGGTTGCAACCGTA CCTCTTCCAGTGATAGAGAACACATCTTCAACAGCCATTAAAAAGGGGAGATCGACTTGC CGCACTGGGACAGGAATGTTGTTGTCCACAGCCTCAATTAATTGATATATTTTATCAACC CATTCATTCTCTCCTCTTGCAATCTTGGAAGACTTCTCAAAGGCCTCAAGAGCCTTCAAT GCAGACCCAGCAACCACTGCAACATCATCACCTGGGAATTCATAGGACTTTAAGAGATCC CTAATCTCGAGTTCCACTAGCTCAATAAACTCCTCATCATCAACCTGGTCTGTCTTGTTA AGAAAGACAACAATGTGAGGCACACCCACCTGCTTTGCCAAGAGAATGTGCTCCTTCATC TGTGGCATTGCACCATCAGCTCC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P68158 |
Definition |
sp|P68158|EFTU_TOBAC Elongation factor Tu, chloroplastic OS=Nicotiana tabacum |
Align length |
147 |
Score (bit) |
228.0 |
E-value |
1.0e-59 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919429|Adiantum capillus-veneris mRNA, clone: YMU001_000125_A06. (443 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P68158|EFTU_TOBAC Elongation factor Tu, chloroplastic OS=Nico... 228 1e-59 sp|Q40450|EFTUA_NICSY Elongation factor TuA, chloroplastic OS=Ni... 228 1e-59 sp|Q43467|EFTU1_SOYBN Elongation factor Tu, chloroplastic OS=Gly... 227 1e-59 sp|P46280|EFTU2_SOYBN Elongation factor Tu, chloroplastic OS=Gly... 224 1e-58 sp|Q43364|EFTUB_NICSY Elongation factor TuB, chloroplastic OS=Ni... 223 2e-58 sp|P50065|EFTU_PHOEC Elongation factor Tu (Fragment) OS=Phormidi... 222 6e-58 sp|Q8DI42|EFTU_THEEB Elongation factor Tu OS=Thermosynechococcus... 221 1e-57 sp|P17745|EFTU_ARATH Elongation factor Tu, chloroplastic OS=Arab... 220 2e-57 sp|O24310|EFTU_PEA Elongation factor Tu, chloroplastic OS=Pisum ... 217 2e-56 sp|Q9MUP0|EFTU_MESVI Elongation factor Tu, chloroplastic OS=Meso... 217 2e-56 sp|Q2EEV7|EFTU_HELSJ Elongation factor Tu, plastid OS=Helicospor... 216 3e-56 sp|P50376|EFTU_COSCS Elongation factor Tu, chloroplastic (Fragme... 216 3e-56 sp|B0CCD0|EFTU_ACAM1 Elongation factor Tu OS=Acaryochloris marin... 216 4e-56 sp|Q9TKZ5|EFTU_NEPOL Elongation factor Tu, chloroplastic OS=Neph... 215 6e-56 sp|Q2JUX4|EFTU_SYNJA Elongation factor Tu OS=Synechococcus sp. (... 214 1e-55 sp|A2CI56|EFTU_CHLAT Elongation factor Tu, chloroplastic OS=Chlo... 213 3e-55 sp|Q2JMX7|EFTU_SYNJB Elongation factor Tu OS=Synechococcus sp. G... 213 4e-55 sp|Q01698|EFTU_THEAQ Elongation factor Tu OS=Thermus aquaticus G... 212 6e-55 sp|Q6B8Y0|EFTU_GRATL Elongation factor Tu, chloroplastic OS=Grac... 212 6e-55 sp|Q72GW4|EFTU_THET2 Elongation factor Tu OS=Thermus thermophilu... 211 1e-54 sp|P50380|EFTU_PANMO Elongation factor Tu, chloroplastic (Fragme... 211 1e-54 sp|P50063|EFTU_GLOS1 Elongation factor Tu (Fragment) OS=Gloeothe... 211 1e-54 sp|P60339|EFTU2_THET8 Elongation factor Tu-B OS=Thermus thermoph... 211 1e-54 sp|P60338|EFTU1_THETH Elongation factor Tu-A OS=Thermus thermoph... 211 1e-54 sp|Q5SHN6|EFTU1_THET8 Elongation factor Tu-A OS=Thermus thermoph... 211 1e-54 sp|Q118Z2|EFTU_TRIEI Elongation factor Tu OS=Trichodesmium eryth... 210 2e-54 sp|P50064|EFTU_GLOVI Elongation factor Tu OS=Gloeobacter violace... 210 2e-54 sp|P50378|EFTU_GONPE Elongation factor Tu, chloroplastic (Fragme... 209 3e-54 sp|P18668|EFTU_SYNP6 Elongation factor Tu OS=Synechococcus sp. (... 209 4e-54 sp|P33171|EFTU_SYNE7 Elongation factor Tu OS=Synechococcus elong... 209 4e-54
>sp|P68158|EFTU_TOBAC Elongation factor Tu, chloroplastic OS=Nicotiana tabacum GN=TUFA PE=3 SV=1 Length = 478
Score = 228 bits (580), Expect = 1e-59 Identities = 107/147 (72%), Positives = 131/147 (89%) Frame = -1
Query: 443 GADGAMPQMKEHILLAKQVGVPHIVVFLNKTDQVDDEEFIELVELEIRDLLKSYEFPGDD 264 GADG MPQ KEHILLAKQVGVP++VVFLNK DQVDDEE ++LVELE+R+LL SYEFPGDD Sbjct: 177 GADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDD 236
Query: 263 VAVVAGSALKALEAFEKSSKIARGENEWVDKIYQLIEAVDNNIPVPVRQVDLPFLMAVED 84 + +++GSAL ALEA + I RGEN+WVDKIY+L++AVD+ IP+PVRQ +LPFLMA+ED Sbjct: 237 IPIISGSALLALEALMANPSIKRGENQWVDKIYELMDAVDSYIPIPVRQTELPFLMAIED 296
Query: 83 VFSITGRGTVATGKVERGKIKMGETVD 3 VFSITGRGTVATG+VERG +++G+TVD Sbjct: 297 VFSITGRGTVATGRVERGTVRIGDTVD 323
>sp|Q40450|EFTUA_NICSY Elongation factor TuA, chloroplastic OS=Nicotiana sylvestris GN=TUFA PE=2 SV=2 Length = 478
Score = 228 bits (580), Expect = 1e-59 Identities = 107/147 (72%), Positives = 131/147 (89%) Frame = -1
Query: 443 GADGAMPQMKEHILLAKQVGVPHIVVFLNKTDQVDDEEFIELVELEIRDLLKSYEFPGDD 264 GADG MPQ KEHILLAKQVGVP++VVFLNK DQVDDEE ++LVELE+R+LL SYEFPGDD Sbjct: 177 GADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDD 236
Query: 263 VAVVAGSALKALEAFEKSSKIARGENEWVDKIYQLIEAVDNNIPVPVRQVDLPFLMAVED 84 + +++GSAL ALEA + I RGEN+WVDKIY+L++AVD+ IP+PVRQ +LPFLMA+ED Sbjct: 237 IPIISGSALLALEALMANPSIKRGENQWVDKIYELMDAVDSYIPIPVRQTELPFLMAIED 296
Query: 83 VFSITGRGTVATGKVERGKIKMGETVD 3 VFSITGRGTVATG+VERG +++G+TVD Sbjct: 297 VFSITGRGTVATGRVERGTVRIGDTVD 323
>sp|Q43467|EFTU1_SOYBN Elongation factor Tu, chloroplastic OS=Glycine max GN=TUFA PE=3 SV=1 Length = 479
Score = 227 bits (579), Expect = 1e-59 Identities = 110/147 (74%), Positives = 128/147 (87%) Frame = -1
Query: 443 GADGAMPQMKEHILLAKQVGVPHIVVFLNKTDQVDDEEFIELVELEIRDLLKSYEFPGDD 264 GADG MPQ KEHI+LAKQVGVP++VVFLNK DQVDDEE ++LVE+E+RDLL SYEFPGDD Sbjct: 178 GADGPMPQTKEHIILAKQVGVPNMVVFLNKQDQVDDEELLQLVEIEVRDLLSSYEFPGDD 237
Query: 263 VAVVAGSALKALEAFEKSSKIARGENEWVDKIYQLIEAVDNNIPVPVRQVDLPFLMAVED 84 +V+GSAL ALEA + I RG+NEWVDKI+QL++ VDN IP+P RQ DLPFL+AVED Sbjct: 238 TPIVSGSALLALEALMANPAIKRGDNEWVDKIFQLMDEVDNYIPIPQRQTDLPFLLAVED 297
Query: 83 VFSITGRGTVATGKVERGKIKMGETVD 3 VFSITGRGTVATG+VERG IK+GETVD Sbjct: 298 VFSITGRGTVATGRVERGTIKVGETVD 324
>sp|P46280|EFTU2_SOYBN Elongation factor Tu, chloroplastic OS=Glycine max GN=TUFB1 PE=3 SV=1 Length = 479
Score = 224 bits (572), Expect = 1e-58 Identities = 107/147 (72%), Positives = 129/147 (87%) Frame = -1
Query: 443 GADGAMPQMKEHILLAKQVGVPHIVVFLNKTDQVDDEEFIELVELEIRDLLKSYEFPGDD 264 GADG MPQ KEHILLAKQVGVP+IVVFLNK DQVDDEE ++LVELE+R+LL YEFPGDD Sbjct: 178 GADGPMPQTKEHILLAKQVGVPNIVVFLNKQDQVDDEELLQLVELEVRELLSKYEFPGDD 237
Query: 263 VAVVAGSALKALEAFEKSSKIARGENEWVDKIYQLIEAVDNNIPVPVRQVDLPFLMAVED 84 V +++GSAL +LEA + I RGEN+WVDKIY+L+EAVD+ IP+P RQ +LPFL+A+ED Sbjct: 238 VPIISGSALLSLEALMANPSIKRGENQWVDKIYELMEAVDDYIPIPQRQTELPFLLAIED 297
Query: 83 VFSITGRGTVATGKVERGKIKMGETVD 3 VF+ITGRGTVATG+VERG I++GETVD Sbjct: 298 VFTITGRGTVATGRVERGTIRVGETVD 324
>sp|Q43364|EFTUB_NICSY Elongation factor TuB, chloroplastic OS=Nicotiana sylvestris GN=TUFB PE=2 SV=1 Length = 485
Score = 223 bits (569), Expect = 2e-58 Identities = 107/147 (72%), Positives = 127/147 (86%) Frame = -1
Query: 443 GADGAMPQMKEHILLAKQVGVPHIVVFLNKTDQVDDEEFIELVELEIRDLLKSYEFPGDD 264 GADG MPQ KEHILLAKQVGVP++VVFLNK DQVDDEE +ELVELE+R+LL SYEFPGD+ Sbjct: 184 GADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDE 243
Query: 263 VAVVAGSALKALEAFEKSSKIARGENEWVDKIYQLIEAVDNNIPVPVRQVDLPFLMAVED 84 + +++GSAL ALEA + I RGEN+WVDKIYQL++ VD IP+P RQ +LPFLMA+ED Sbjct: 244 IPIISGSALLALEALMANPSIKRGENQWVDKIYQLMDNVDEYIPIPQRQTELPFLMAIED 303
Query: 83 VFSITGRGTVATGKVERGKIKMGETVD 3 VFSITGRGTVATG+VERG +K+GE VD Sbjct: 304 VFSITGRGTVATGRVERGTVKVGEIVD 330
>sp|P50065|EFTU_PHOEC Elongation factor Tu (Fragment) OS=Phormidium ectocarpi GN=tufA PE=3 SV=1 Length = 235
Score = 222 bits (565), Expect = 6e-58 Identities = 104/146 (71%), Positives = 126/146 (86%) Frame = -1
Query: 440 ADGAMPQMKEHILLAKQVGVPHIVVFLNKTDQVDDEEFIELVELEIRDLLKSYEFPGDDV 261 ADG MPQ +EHILL+KQVGVPHIVVFLNK DQVDDEE +ELVELE+R+LL SY+FPGDD+ Sbjct: 20 ADGPMPQTREHILLSKQVGVPHIVVFLNKQDQVDDEELLELVELEVRELLSSYDFPGDDI 79
Query: 260 AVVAGSALKALEAFEKSSKIARGENEWVDKIYQLIEAVDNNIPVPVRQVDLPFLMAVEDV 81 +VAGSALKA+EA + +S I +GE+EWVDKI+ L+ VD IP P R +D PFLMAVEDV Sbjct: 80 PIVAGSALKAVEALQANSSIGKGEDEWVDKIHDLVAQVDEYIPAPERDIDKPFLMAVEDV 139
Query: 80 FSITGRGTVATGKVERGKIKMGETVD 3 FSITGRGTVATG++ERGK+K+GE ++ Sbjct: 140 FSITGRGTVATGRIERGKVKVGEQIE 165
>sp|Q8DI42|EFTU_THEEB Elongation factor Tu OS=Thermosynechococcus elongatus (strain BP-1) GN=tuf PE=3 SV=1 Length = 409
Score = 221 bits (563), Expect = 1e-57 Identities = 107/145 (73%), Positives = 123/145 (84%) Frame = -1
Query: 437 DGAMPQMKEHILLAKQVGVPHIVVFLNKTDQVDDEEFIELVELEIRDLLKSYEFPGDDVA 258 DGAMPQ KEHILLA+QVGVP IVVFLNK D VDDEE +ELVELE+R+LL YEFPGD+V Sbjct: 110 DGAMPQTKEHILLARQVGVPSIVVFLNKVDMVDDEELLELVELELRELLNEYEFPGDEVP 169
Query: 257 VVAGSALKALEAFEKSSKIARGENEWVDKIYQLIEAVDNNIPVPVRQVDLPFLMAVEDVF 78 ++ GS LKALEA + K RGENEWVDKIY+L++AVDN IP P R VD PFLMAVEDVF Sbjct: 170 IIRGSGLKALEAMTANPKTLRGENEWVDKIYELMDAVDNYIPTPERDVDKPFLMAVEDVF 229
Query: 77 SITGRGTVATGKVERGKIKMGETVD 3 SITGRGTVATG++ERG+IK+ ETV+ Sbjct: 230 SITGRGTVATGRIERGRIKLNETVE 254
>sp|P17745|EFTU_ARATH Elongation factor Tu, chloroplastic OS=Arabidopsis thaliana GN=TUFA PE=1 SV=1 Length = 476
Score = 220 bits (560), Expect = 2e-57 Identities = 104/147 (70%), Positives = 128/147 (87%) Frame = -1
Query: 443 GADGAMPQMKEHILLAKQVGVPHIVVFLNKTDQVDDEEFIELVELEIRDLLKSYEFPGDD 264 GADG MPQ KEHILLAKQVGVP +VVFLNK DQVDD E +ELVELE+R+LL SYEF GDD Sbjct: 175 GADGPMPQTKEHILLAKQVGVPDMVVFLNKEDQVDDAELLELVELEVRELLSSYEFNGDD 234
Query: 263 VAVVAGSALKALEAFEKSSKIARGENEWVDKIYQLIEAVDNNIPVPVRQVDLPFLMAVED 84 + +++GSAL A+E ++ K+ RG+N+WVDKIY+L++AVD+ IP+P RQ +LPFL+AVED Sbjct: 235 IPIISGSALLAVETLTENPKVKRGDNKWVDKIYELMDAVDDYIPIPQRQTELPFLLAVED 294
Query: 83 VFSITGRGTVATGKVERGKIKMGETVD 3 VFSITGRGTVATG+VERG +K+GETVD Sbjct: 295 VFSITGRGTVATGRVERGTVKVGETVD 321
>sp|O24310|EFTU_PEA Elongation factor Tu, chloroplastic OS=Pisum sativum GN=tufA PE=2 SV=1 Length = 488
Score = 217 bits (553), Expect = 2e-56 Identities = 103/147 (70%), Positives = 124/147 (84%) Frame = -1
Query: 443 GADGAMPQMKEHILLAKQVGVPHIVVFLNKTDQVDDEEFIELVELEIRDLLKSYEFPGDD 264 GADG MPQ KEHILLAKQVGVP +VVFLNK DQVDDEE +ELVELE+R+LL SYEFPGDD Sbjct: 187 GADGPMPQTKEHILLAKQVGVPSVVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDD 246
Query: 263 VAVVAGSALKALEAFEKSSKIARGENEWVDKIYQLIEAVDNNIPVPVRQVDLPFLMAVED 84 + +V+GSAL ALEA + + RG N+WVDKIYQL++ VD IP+P RQ +LPFL+A+ED Sbjct: 247 IPIVSGSALLALEALMANPTLKRGNNQWVDKIYQLMDEVDKYIPIPQRQTELPFLLAIED 306
Query: 83 VFSITGRGTVATGKVERGKIKMGETVD 3 VFSIT RGTVATG++ERG +K+G+ VD Sbjct: 307 VFSITXRGTVATGRIERGLVKVGDVVD 333
>sp|Q9MUP0|EFTU_MESVI Elongation factor Tu, chloroplastic OS=Mesostigma viride GN=tufA PE=3 SV=1 Length = 410
Score = 217 bits (553), Expect = 2e-56 Identities = 106/147 (72%), Positives = 122/147 (82%) Frame = -1
Query: 443 GADGAMPQMKEHILLAKQVGVPHIVVFLNKTDQVDDEEFIELVELEIRDLLKSYEFPGDD 264 GADG MPQ KEHILLAKQVGVP++VVFLNK DQVDD E +ELVELE+R+ L SY+FPGD+ Sbjct: 108 GADGPMPQTKEHILLAKQVGVPNMVVFLNKEDQVDDPELLELVELEVRETLNSYDFPGDE 167
Query: 263 VAVVAGSALKALEAFEKSSKIARGENEWVDKIYQLIEAVDNNIPVPVRQVDLPFLMAVED 84 + VVAGSAL ALEA + SK+ARG N WVDKIY L++ VD IP P R D PFLMA+ED Sbjct: 168 IPVVAGSALMALEALTQDSKLARGSNPWVDKIYALMDQVDKYIPTPQRDTDKPFLMAIED 227
Query: 83 VFSITGRGTVATGKVERGKIKMGETVD 3 VFSITGRGTVATG+VERGK+ +GE VD Sbjct: 228 VFSITGRGTVATGRVERGKVVVGENVD 254
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7PM00 |
Definition |
tr|A7PM00|A7PM00_VITVI Chromosome chr14 scaffold_21, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
147 |
Score (bit) |
230.0 |
E-value |
3.0e-59 |
Report |
|