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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919436
Clone id YMU001_000125_B01
Library
Length 461
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000125_B01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGTACCTGCGAGAGAGAGAGGAGTACTCGTGATTTTGACTCAAAAGGTGTTAAATTAAA
GTACACACCATAGCATAAAAATATGTACATAGAGGGCTTTATTTATAATCCTGGAGTAAA
TATCCGGCTGGAGCTCCTCCCTTTCTACTTAGCTTACACATAGCCATACAGCACATAGGC
CAAATACCAAATACTAAGCTATACAAGTGTAGAGATGTTTCCCATAGCGAGATGAAAGGA
CATGCCTATCCCAACAATCCTCCCCTTAGGCATGGACTATACTGAATGAAGCTGAATCAA
GACCTAAAGCCACATAGGCTAATAGTCACACAAACTGAGATAGTCATATAGACTATAGTC
TCACAGACTGAGTGGTCTCATCATATGGTGCCACACAGACTAAAAAATCCTCCCCTTAAA
CAAAGAAGGTCATCCATTTTACAGTACATCAGTATACTCGC
■■Homology search results ■■ -
sp_hit_id A7H543
Definition sp|A7H543|SERC_CAMJD Phosphoserine aminotransferase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97)
Align length 40
Score (bit) 31.6
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919436|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_B01.
         (461 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A7H543|SERC_CAMJD Phosphoserine aminotransferase OS=Campyloba...    32   1.7  
sp|Q9PIH3|SERC_CAMJE Phosphoserine aminotransferase OS=Campyloba...    31   2.9  
sp|Q9H4Z2|ZN335_HUMAN Zinc finger protein 335 OS=Homo sapiens GN...    30   5.0  
sp|Q5HWE5|SERC_CAMJR Phosphoserine aminotransferase OS=Campyloba...    29   8.5  
sp|A1VY45|SERC_CAMJJ Phosphoserine aminotransferase OS=Campyloba...    29   8.5  
sp|A8FKB5|SERC_CAMJ8 Phosphoserine aminotransferase OS=Campyloba...    29   8.5  
sp|P51885|LUM_MOUSE Lumican OS=Mus musculus GN=Lum PE=1 SV=2           29   8.5  
sp|Q7RZA2|GEM1_NEUCR Mitochondrial Rho GTPase 1 OS=Neurospora cr...    29   8.5  

>sp|A7H543|SERC_CAMJD Phosphoserine aminotransferase
           OS=Campylobacter jejuni subsp. doylei (strain ATCC
           BAA-1458 / RM4099 / 269.97) GN=serC PE=3 SV=1
          Length = 358

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +1

Query: 193 TKLYKCRDVSHSEMKGHAYPNNPPLRHGLY*MKLNQDLKP 312
           T LYKC D+S    KGHA   +  L +  + +  N+DL+P
Sbjct: 268 TMLYKCIDLSDGFYKGHADKKDRSLMNVSFNIAKNKDLEP 307


>sp|Q9PIH3|SERC_CAMJE Phosphoserine aminotransferase
           OS=Campylobacter jejuni GN=serC PE=3 SV=1
          Length = 358

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +1

Query: 193 TKLYKCRDVSHSEMKGHAYPNNPPLRHGLY*MKLNQDLKP 312
           T LY+C D+S+   KGHA   +  L +  + +  N+DL+P
Sbjct: 268 TMLYECIDLSNGFYKGHADKKDRSLMNVSFNIAKNKDLEP 307


>sp|Q9H4Z2|ZN335_HUMAN Zinc finger protein 335 OS=Homo sapiens
           GN=ZNF335 PE=1 SV=1
          Length = 1342

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 15/69 (21%)
 Frame = +1

Query: 109 SWSKYPAGAPPFLLSLHIAIQHIGQIP--------------NTKLY-KCRDVSHSEMKGH 243
           S+  Y      FLLS H+A++H G  P              N +L+ +CR  S  E  G 
Sbjct: 652 SFCPYRTFREDFLLS-HVAVKHTGAKPFACEYCHFSTRHKKNLRLHVRCRHASSFEEWGR 710

Query: 244 AYPNNPPLR 270
            +P  PP R
Sbjct: 711 RHPEEPPSR 719


>sp|Q5HWE5|SERC_CAMJR Phosphoserine aminotransferase
           OS=Campylobacter jejuni (strain RM1221) GN=serC PE=3
           SV=1
          Length = 358

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 199 LYKCRDVSHSEMKGHAYPNNPPLRHGLY*MKLNQDLKP 312
           LY+C D+S+   KGHA   +  L +  + +  N+DL+P
Sbjct: 270 LYECIDLSNGFYKGHADKKDRSLMNVSFNIAKNKDLEP 307


>sp|A1VY45|SERC_CAMJJ Phosphoserine aminotransferase
           OS=Campylobacter jejuni subsp. jejuni serotype O:23/36
           (strain 81-176) GN=serC PE=3 SV=1
          Length = 358

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 199 LYKCRDVSHSEMKGHAYPNNPPLRHGLY*MKLNQDLKP 312
           LY+C D+S+   KGHA   +  L +  + +  N+DL+P
Sbjct: 270 LYECIDLSNGFYKGHADKKDRSLMNVSFNIAKNKDLEP 307


>sp|A8FKB5|SERC_CAMJ8 Phosphoserine aminotransferase
           OS=Campylobacter jejuni subsp. jejuni serotype O:6
           (strain 81116 / NCTC 11828) GN=serC PE=3 SV=1
          Length = 358

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 199 LYKCRDVSHSEMKGHAYPNNPPLRHGLY*MKLNQDLKP 312
           LY+C D+S+   KGHA   +  L +  + +  N+DL+P
Sbjct: 270 LYECIDLSNGFYKGHADKKDRSLMNVSFNIAKNKDLEP 307


>sp|P51885|LUM_MOUSE Lumican OS=Mus musculus GN=Lum PE=1 SV=2
          Length = 338

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
 Frame = +1

Query: 115 SKYPAGAPPFLLSLHIAIQHIGQIPN------TKLYKCRDVSHSEMKGHAYPNN 258
           SK PAG P  LL+L++    I  IP+      T L   R +SH+E+     P N
Sbjct: 197 SKLPAGLPTSLLTLYLDNNKISNIPDEYFKRFTGLQYLR-LSHNELADSGVPGN 249


>sp|Q7RZA2|GEM1_NEUCR Mitochondrial Rho GTPase 1 OS=Neurospora
           crassa GN=gem-1 PE=3 SV=1
          Length = 629

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 145 EREELQPDIYSRIINKALYVHIFMLW 68
           +R ELQPD Y+  +N +  +H+ + W
Sbjct: 544 QRSELQPDAYTAALNMSAPLHVSVTW 569
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919436|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_B01.
         (461 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******