BP919439
Clone id YMU001_000125_B04
Library
Length 556
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000125_B04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
AAAAAGGATAGCACATTCCGCATGTGCATAGATTATAGATCTCTAAACAAGATCACAATC
AAGAATCGATTTCCAATCCCTCGGATTGACGACATTCTTGACAAGTTACAAGGAGCAAGT
GTCTTTAGTCGTATAGACTTGAAGAGCGGCTATCATCAAATCCGCATAGCTCCTTAGGAT
GTGCATAAGACTTCATTAGAACAACCTTCGGGTTGTATGAATTCTTAGTGATGCCTTTTG
GACTCACTAATGCACCAACCACATTCAACAGAATGATGGATAGAATCTTCCACTCATATA
GAAGCTTCACAGGCGTTTTCTTTAATGACTTCTTAATCTTCTCAGAGACAGAAGACGAAC
ACTATAAGCATCTCGTCTTAGTGTTTGAAGAATTACGCAAACACAAATTATTTGTGAATG
CTAAGAAGAGTGAGTTCTTTCTAAAAGAAATCCACTATTTGGGCCATATAGTATCTCACA
ATCAGGTGAGAATGGACCCTGATAAGACTCAAGTAGTTGTAGAATGGCCTACGCCAACTA
CAGTACATGATGTATG
■■Homology search results ■■ -
sp_hit_id Q99315
Definition sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae
Align length 115
Score (bit) 94.7
E-value 4.0e-40
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919439|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_B04.
(556 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Sa... 95 4e-40
sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Sa... 95 4e-40
sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from tra... 90 1e-31
sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from tra... 96 1e-30
sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from tra... 86 2e-30
sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from tra... 84 4e-28
sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa prot... 74 6e-28
sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa prot... 74 5e-27
sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa prot... 74 5e-27
sp|P31843|RRPO_OENBE RNA-directed DNA polymerase homolog OS=Oeno... 81 5e-25
sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from tra... 66 1e-23
sp|Q02964|POL_CAMVE Enzymatic polyprotein OS=Cauliflower mosaic ... 80 7e-23
sp|P03555|POL_CAMVC Enzymatic polyprotein OS=Cauliflower mosaic ... 80 7e-23
sp|P03554|POL_CAMVS Enzymatic polyprotein OS=Cauliflower mosaic ... 80 9e-23
sp|Q00962|POL_CAMVN Enzymatic polyprotein OS=Cauliflower mosaic ... 79 2e-22
sp|P03556|POL_CAMVD Enzymatic polyprotein OS=Cauliflower mosaic ... 80 3e-22
sp|P19199|POL_COYMV Putative polyprotein OS=Commelina yellow mot... 80 2e-21
sp|Q7TD08|POL_CYLCV Enzymatic polyprotein OS=Cestrum yellow leaf... 61 1e-19
sp|P15629|POL_SOCMV Enzymatic polyprotein OS=Soybean chlorotic m... 60 6e-19
sp|P27502|POL_RTBVP Polyprotein P3 OS=Rice tungro bacilliform vi... 74 1e-18
sp|P09523|POL_FMVD Enzymatic polyprotein OS=Figwort mosaic virus... 65 5e-18
sp|Q6XKE6|POLG_PVCV2 Genome polyprotein OS=Petunia vein clearing... 55 6e-15
sp|Q91DM0|POLG_PVCV1 Genome polyprotein OS=Petunia vein clearing... 55 6e-15
sp|P05400|POL_CERV Enzymatic polyprotein OS=Carnation etched rin... 54 4e-13
sp|Q09575|YRD6_CAEEL Uncharacterized protein K02A2.6 OS=Caenorha... 66 1e-10
sp|P21414|POL_GALV Pol polyprotein OS=Gibbon ape leukemia virus ... 52 2e-06
sp|Q9TTC1|POL_KORV Pro-Pol polyprotein OS=Koala retrovirus GN=pr... 51 3e-06
sp|A6NKG5|RTL1_HUMAN Retrotransposon-like protein 1 OS=Homo sapi... 50 1e-05
sp|P03363|POL_HTLV2 Gag-Pro-Pol polyprotein OS=Human T-cell leuk... 45 2e-05
sp|Q52QI2|RTL1_BOVIN Retrotransposon-like protein 1 OS=Bos tauru... 48 4e-05

>sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein
OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3
Length = 1547

Score = 94.7 bits (234), Expect(2) = 4e-40
Identities = 49/115 (42%), Positives = 67/115 (58%)
Frame = +3

Query: 201 TTFGLYEFLVMPFGLTNAPTTFNRMMDRIFHSYRSFTGVFFNDFLIFSETEDEHYKHLVL 380
T G YE+ VMPFGL NAP+TF R M F R F V+ +D LIFSE+ +EH+KHL
Sbjct: 708 TPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLR-FVNVYLDDILIFSESPEEHWKHLDT 766

Query: 381 VFEELRKHKLFVNAKKSEFFLKEIHYLGHIVSHNQVRMDPDKTQVVVEWPTPTTV 545
V E L+ L V KK +F +E +LG+ + ++ K + ++PTP TV
Sbjct: 767 VLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTV 821



Score = 90.1 bits (222), Expect(2) = 4e-40
Identities = 39/71 (54%), Positives = 54/71 (76%)
Frame = +1

Query: 1 KKDSTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQGASVFSRIDLKSGYHQIRIAP*D 180
KKD TFR+C+DYR+LNK TI + FP+PRID++L ++ A +F+ +DL SGYHQI + P D
Sbjct: 641 KKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKD 700

Query: 181 VHKTSLEQPSG 213
+KT+ PSG
Sbjct: 701 RYKTAFVTPSG 711


>sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein
OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2
Length = 1498

Score = 94.7 bits (234), Expect(2) = 4e-40
Identities = 49/115 (42%), Positives = 67/115 (58%)
Frame = +3

Query: 201 TTFGLYEFLVMPFGLTNAPTTFNRMMDRIFHSYRSFTGVFFNDFLIFSETEDEHYKHLVL 380
T G YE+ VMPFGL NAP+TF R M F R F V+ +D LIFSE+ +EH+KHL
Sbjct: 734 TPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLR-FVNVYLDDILIFSESPEEHWKHLDT 792

Query: 381 VFEELRKHKLFVNAKKSEFFLKEIHYLGHIVSHNQVRMDPDKTQVVVEWPTPTTV 545
V E L+ L V KK +F +E +LG+ + ++ K + ++PTP TV
Sbjct: 793 VLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTV 847



Score = 90.1 bits (222), Expect(2) = 4e-40
Identities = 39/71 (54%), Positives = 54/71 (76%)
Frame = +1

Query: 1 KKDSTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQGASVFSRIDLKSGYHQIRIAP*D 180
KKD TFR+C+DYR+LNK TI + FP+PRID++L ++ A +F+ +DL SGYHQI + P D
Sbjct: 667 KKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKD 726

Query: 181 VHKTSLEQPSG 213
+KT+ PSG
Sbjct: 727 RYKTAFVTPSG 737


>sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from
transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4
SV=1
Length = 1058

Score = 89.7 bits (221), Expect(2) = 1e-31
Identities = 45/119 (37%), Positives = 71/119 (59%), Gaps = 1/119 (0%)
Frame = +3

Query: 201 TTFGLYEFLVMPFGLTNAPTTFNRMMDRIFHSY-RSFTGVFFNDFLIFSETEDEHYKHLV 377
T G YE+L MPFGL NAP TF R M+ I V+ +D ++FS + DEH + L
Sbjct: 324 TKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLG 383

Query: 378 LVFEELRKHKLFVNAKKSEFFLKEIHYLGHIVSHNQVRMDPDKTQVVVEWPTPTTVHDV 554
LVFE+L K L + K EF +E +LGH+++ + ++ +P+K + + ++P PT ++
Sbjct: 384 LVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEI 442



Score = 67.0 bits (162), Expect(2) = 1e-31
Identities = 32/66 (48%), Positives = 43/66 (65%)
Frame = +1

Query: 16 FRMCIDYRSLNKITIKNRFPIPRIDDILDKLQGASVFSRIDLKSGYHQIRIAP*DVHKTS 195
FR+ IDYR LN+IT+ +R PIP +D+IL KL + F+ IDL G+HQI + P V KT+
Sbjct: 262 FRIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTA 321

Query: 196 LEQPSG 213
G
Sbjct: 322 FSTKHG 327


>sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from
transposon opus OS=Drosophila melanogaster GN=pol PE=4
SV=1
Length = 1003

Score = 95.9 bits (237), Expect(2) = 1e-30
Identities = 49/119 (41%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
Frame = +3

Query: 201 TTFGLYEFLVMPFGLTNAPTTFNRMMDRIFHSY-RSFTGVFFNDFLIFSETEDEHYKHLV 377
T G YEFL +PFGL NAP F RM+D I + V+ +D ++FSE D H+K+L
Sbjct: 240 TLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLR 299

Query: 378 LVFEELRKHKLFVNAKKSEFFLKEIHYLGHIVSHNQVRMDPDKTQVVVEWPTPTTVHDV 554
LV L K L VN +KS F ++ +LG+IV+ + ++ DP K + + E P PT+V ++
Sbjct: 300 LVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKEL 358



Score = 57.4 bits (137), Expect(2) = 1e-30
Identities = 26/69 (37%), Positives = 42/69 (60%)
Frame = +1

Query: 7 DSTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQGASVFSRIDLKSGYHQIRIAP*DVH 186
+ +RM +D++ LN +TI + +PIP I+ L L A F+ +DL SG+HQI + D+
Sbjct: 175 EKQYRMVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIP 234

Query: 187 KTSLEQPSG 213
KT+ +G
Sbjct: 235 KTAFSTLNG 243


>sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from
transposon 297 OS=Drosophila melanogaster GN=pol PE=4
SV=1
Length = 1059

Score = 86.3 bits (212), Expect(2) = 2e-30
Identities = 46/114 (40%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Frame = +3

Query: 201 TTFGLYEFLVMPFGLTNAPTTFNRMMDRIFHSY-RSFTGVFFNDFLIFSETEDEHYKHLV 377
T G YE+L MPFGL NAP TF R M+ I V+ +D +IFS + EH +
Sbjct: 323 TKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQ 382

Query: 378 LVFEELRKHKLFVNAKKSEFFLKEIHYLGHIVSHNQVRMDPDKTQVVVEWPTPT 539
LVF +L L + K EF KE ++LGHIV+ + ++ +P K + +V +P PT
Sbjct: 383 LVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPT 436



Score = 66.2 bits (160), Expect(2) = 2e-30
Identities = 31/66 (46%), Positives = 43/66 (65%)
Frame = +1

Query: 16 FRMCIDYRSLNKITIKNRFPIPRIDDILDKLQGASVFSRIDLKSGYHQIRIAP*DVHKTS 195
+R+ IDYR LN+ITI +R+PIP +D+IL KL F+ IDL G+HQI + + KT+
Sbjct: 261 YRVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTA 320

Query: 196 LEQPSG 213
SG
Sbjct: 321 FSTKSG 326


>sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from
transposon gypsy OS=Drosophila melanogaster GN=pol PE=4
SV=1
Length = 1035

Score = 83.6 bits (205), Expect(2) = 4e-28
Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 1/116 (0%)
Frame = +3

Query: 210 GLYEFLVMPFGLTNAPTTFNRMMDRIFHSY-RSFTGVFFNDFLIFSETEDEHYKHLVLVF 386
G YEF +PFGL NA + F R +D + V+ +D +IFSE E +H +H+ V
Sbjct: 302 GKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVL 361

Query: 387 EELRKHKLFVNAKKSEFFLKEIHYLGHIVSHNQVRMDPDKTQVVVEWPTPTTVHDV 554
+ L + V+ +K+ FF + + YLG IVS + + DP+K + + E+P P V+ V
Sbjct: 362 KCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKV 417



Score = 61.2 bits (147), Expect(2) = 4e-28
Identities = 32/65 (49%), Positives = 41/65 (63%)
Frame = +1

Query: 19 RMCIDYRSLNKITIKNRFPIPRIDDILDKLQGASVFSRIDLKSGYHQIRIAP*DVHKTSL 198
R+ ID+R LN+ TI +R+P+P I IL L A F+ +DLKSGYHQI +A D KTS
Sbjct: 238 RLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSF 297

Query: 199 EQPSG 213
G
Sbjct: 298 SVNGG 302


>sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa protein
type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1
Length = 1333

Score = 74.3 bits (181), Expect(2) = 6e-28
Identities = 32/71 (45%), Positives = 48/71 (67%)
Frame = +1

Query: 1 KKDSTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQGASVFSRIDLKSGYHQIRIAP*D 180
KK+ T RM +DY+ LNK N +P+P I+ +L K+QG+++F+++DLKS YH IR+ D
Sbjct: 457 KKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGD 516

Query: 181 VHKTSLEQPSG 213
HK + P G
Sbjct: 517 EHKLAFRCPRG 527



Score = 69.7 bits (169), Expect(2) = 6e-28
Identities = 33/110 (30%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Frame = +3

Query: 210 GLYEFLVMPFGLTNAPTTFNRMMDRIF-HSYRSFTGVFFNDFLIFSETEDEHYKHLVLVF 386
G++E+LVMP+G++ AP F ++ I + S + +D LI S++E EH KH+ V
Sbjct: 527 GVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVL 586

Query: 387 EELRKHKLFVNAKKSEFFLKEIHYLGHIVSHNQVRMDPDKTQVVVEWPTP 536
++L+ L +N K EF ++ ++G+ +S + V++W P
Sbjct: 587 QKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQP 636


>sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa protein
type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1
Length = 1333

Score = 74.3 bits (181), Expect(2) = 5e-27
Identities = 32/71 (45%), Positives = 48/71 (67%)
Frame = +1

Query: 1 KKDSTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQGASVFSRIDLKSGYHQIRIAP*D 180
KK+ T RM +DY+ LNK N +P+P I+ +L K+QG+++F+++DLKS YH IR+ D
Sbjct: 457 KKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGD 516

Query: 181 VHKTSLEQPSG 213
HK + P G
Sbjct: 517 EHKLAFRCPRG 527



Score = 66.6 bits (161), Expect(2) = 5e-27
Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Frame = +3

Query: 210 GLYEFLVMPFGLTNAPTTFNRMMDRIFHSYR-SFTGVFFNDFLIFSETEDEHYKHLVLVF 386
G++E+LVMP+G++ AP F ++ I + S + ++ LI S++E EH KH+ V
Sbjct: 527 GVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVL 586

Query: 387 EELRKHKLFVNAKKSEFFLKEIHYLGHIVSHNQVRMDPDKTQVVVEWPTP 536
++L+ L +N K EF ++ ++G+ +S + V++W P
Sbjct: 587 QKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQP 636


>sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa protein
type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1
Length = 1333

Score = 74.3 bits (181), Expect(2) = 5e-27
Identities = 32/71 (45%), Positives = 48/71 (67%)
Frame = +1

Query: 1 KKDSTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQGASVFSRIDLKSGYHQIRIAP*D 180
KK+ T RM +DY+ LNK N +P+P I+ +L K+QG+++F+++DLKS YH IR+ D
Sbjct: 457 KKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGD 516

Query: 181 VHKTSLEQPSG 213
HK + P G
Sbjct: 517 EHKLAFRCPRG 527



Score = 66.6 bits (161), Expect(2) = 5e-27
Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Frame = +3

Query: 210 GLYEFLVMPFGLTNAPTTFNRMMDRIFHSYR-SFTGVFFNDFLIFSETEDEHYKHLVLVF 386
G++E+LVMP+G++ AP F ++ I + S + ++ LI S++E EH KH+ V
Sbjct: 527 GVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVL 586

Query: 387 EELRKHKLFVNAKKSEFFLKEIHYLGHIVSHNQVRMDPDKTQVVVEWPTP 536
++L+ L +N K EF ++ ++G+ +S + V++W P
Sbjct: 587 QKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQP 636


>sp|P31843|RRPO_OENBE RNA-directed DNA polymerase homolog
OS=Oenothera bertiana PE=4 SV=1
Length = 142

Score = 80.9 bits (198), Expect(2) = 5e-25
Identities = 35/61 (57%), Positives = 50/61 (81%)
Frame = +1

Query: 13 TFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQGASVFSRIDLKSGYHQIRIAP*DVHKT 192
+ RMCIDYR+L K+TIKN++PIPR+DD+ D+L A+ F+++DL+SGY Q+RIA D KT
Sbjct: 5 SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64

Query: 193 S 195
+
Sbjct: 65 T 65



Score = 53.5 bits (127), Expect(2) = 5e-25
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Frame = +3

Query: 201 TTFGLYEFLVMPFGLTNAPTTFNRMMDRIFHSYRS-FTGVFFND---FLIFSETEDEHYK 368
T +G +EF VMPFGLTNA TF +M+ + + Y F V+ +D + I+S + EH K
Sbjct: 68 TRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHEHIK 127

Query: 369 HLVLVFE 389
HL +V E
Sbjct: 128 HLRVVRE 134


tr_hit_id A2I5E5
Definition tr|A2I5E5|A2I5E5_BETVU Retrotransposon protein OS=Beta vulgaris
Align length 120
Score (bit) 125.0
E-value 4.0e-51
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919439|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_B04.
(556 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A2I5E5|A2I5E5_BETVU Retrotransposon protein OS=Beta vulgaris ... 125 4e-51
tr|Q7XEF2|Q7XEF2_ORYSJ Retrotransposon protein, putative, Ty3-gy... 124 6e-51
tr|Q2R4W7|Q2R4W7_ORYSJ Retrotransposon protein, putative, Ty3-gy... 125 6e-51
tr|Q0D6S9|Q0D6S9_ORYSJ Os07g0444200 protein OS=Oryza sativa subs... 125 8e-51
tr|Q2RB45|Q2RB45_ORYSJ Retrotransposon protein, putative, Ty3-gy... 125 8e-51
tr|Q7XX57|Q7XX57_ORYSJ OSJNBb0049I21.6 protein OS=Oryza sativa s... 125 1e-50
tr|Q7G774|Q7G774_ORYSJ Putative polyprotein (Retrotransposon pro... 127 2e-50
tr|Q7XUA3|Q7XUA3_ORYSJ OSJNBa0019D11.8 protein OS=Oryza sativa s... 124 2e-50
tr|Q2QR60|Q2QR60_ORYSJ Retrotransposon protein, putative, Ty3-gy... 124 2e-50
tr|Q01I31|Q01I31_ORYSA OSIGBa0145G11.8 protein OS=Oryza sativa G... 124 2e-50
tr|Q75HH6|Q75HH6_ORYSJ Putative polyprotein (Retrotransposon pro... 125 2e-50
tr|Q2QSS9|Q2QSS9_ORYSJ Retrotransposon protein, putative, Ty3-gy... 126 2e-50
tr|Q7XZG5|Q7XZG5_ORYSJ Putative gag-pol polyprotein OS=Oryza sat... 125 2e-50
tr|Q7XRV6|Q7XRV6_ORYSJ OSJNBb0049I21.5 protein OS=Oryza sativa s... 124 2e-50
tr|Q53QL2|Q53QL2_ORYSJ Retrotransposon protein, putative, Ty3-gy... 123 2e-50
tr|Q2QTW2|Q2QTW2_ORYSJ Retrotransposon protein, putative, Ty3-gy... 124 3e-50
tr|Q0ZLH4|Q0ZLH4_9ORYZ Polyprotein OS=Oryza australiensis PE=4 SV=1 123 4e-50
tr|Q7XX43|Q7XX43_ORYSJ OSJNBa0059D20.6 protein OS=Oryza sativa s... 124 7e-50
tr|Q2HW78|Q2HW78_MEDTR RNA-directed DNA polymerase (Reverse tran... 122 7e-50
tr|Q7XXI2|Q7XXI2_ORYSJ OSJNBa0059H15.7 protein OS=Oryza sativa s... 124 9e-50
tr|Q8W5B7|Q8W5B7_ORYSA Putative polyprotein OS=Oryza sativa GN=O... 123 1e-49
tr|Q10GH3|Q10GH3_ORYSJ Retrotransposon protein, putative, Ty3-gy... 123 1e-49
tr|Q2R3T2|Q2R3T2_ORYSJ Retrotransposon protein, putative, Ty3-gy... 121 1e-49
tr|Q2R193|Q2R193_ORYSJ Retrotransposon protein, putative, Ty3-gy... 123 2e-49
tr|Q9XE85|Q9XE85_SORBI Polyprotein OS=Sorghum bicolor PE=4 SV=1 123 2e-49
tr|O64892|O64892_ANACO Polyprotein (Fragment) OS=Ananas comosus ... 118 4e-49
tr|Q84KB0|Q84KB0_CUCME Pol protein OS=Cucumis melo PE=4 SV=1 115 6e-49
tr|Q7XKY8|Q7XKY8_ORYSJ OSJNBa0022F16.16 protein OS=Oryza sativa ... 124 7e-49
tr|Q53PB2|Q53PB2_ORYSJ Retrotransposon protein, putative, Ty3-gy... 123 7e-49
tr|Q53JJ6|Q53JJ6_ORYSJ Retrotransposon protein, putative, Ty3-gy... 118 9e-49

>tr|A2I5E5|A2I5E5_BETVU Retrotransposon protein OS=Beta vulgaris PE=4
SV=1
Length = 1501

Score = 125 bits (313), Expect(2) = 4e-51
Identities = 61/120 (50%), Positives = 80/120 (66%), Gaps = 1/120 (0%)
Frame = +3

Query: 198 RTTFGLYEFLVMPFGLTNAPTTFNRMMDRIFHSYRS-FTGVFFNDFLIFSETEDEHYKHL 374
RT +G YEF VMPFGLTNAP F +M+RIFH + F VF +D LI+S E EH +HL
Sbjct: 671 RTRYGHYEFTVMPFGLTNAPAIFMDLMNRIFHEFLDKFVVVFIDDILIYSRNETEHDEHL 730

Query: 375 VLVFEELRKHKLFVNAKKSEFFLKEIHYLGHIVSHNQVRMDPDKTQVVVEWPTPTTVHDV 554
++ E LRK++L+ K EF L+++ +LGH VS V +DP K Q V EWPTP +V D+
Sbjct: 731 RIILETLRKNQLYAKFSKCEFRLEKVAFLGHFVSKEGVSVDPAKIQAVSEWPTPKSVTDI 790



Score = 100 bits (248), Expect(2) = 4e-51
Identities = 44/71 (61%), Positives = 57/71 (80%)
Frame = +1

Query: 1 KKDSTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQGASVFSRIDLKSGYHQIRIAP*D 180
KKD + R+CIDYR LN +TIKN++P+PRIDD+ D+L GASVFS+IDL+SGYHQ+R+A D
Sbjct: 605 KKDGSMRLCIDYRELNNVTIKNKYPLPRIDDLFDQLNGASVFSKIDLRSGYHQLRVADKD 664

Query: 181 VHKTSLEQPSG 213
V KT+ G
Sbjct: 665 VPKTAFRTRYG 675


>tr|Q7XEF2|Q7XEF2_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os10g28930 PE=4 SV=1
Length = 1470

Score = 124 bits (311), Expect(2) = 6e-51
Identities = 58/119 (48%), Positives = 81/119 (68%), Gaps = 1/119 (0%)
Frame = +3

Query: 201 TTFGLYEFLVMPFGLTNAPTTFNRMMDRIFHSYRS-FTGVFFNDFLIFSETEDEHYKHLV 377
T +GLYEF VM FGLTNAP F +M+++F Y F VF +D LI+S+ E+EH +HL
Sbjct: 654 TRYGLYEFTVMSFGLTNAPAYFMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAEHLR 713

Query: 378 LVFEELRKHKLFVNAKKSEFFLKEIHYLGHIVSHNQVRMDPDKTQVVVEWPTPTTVHDV 554
LV ++LRKHKL+ K EF+LKE+ +LGH++S V +DP K + V EW P +V ++
Sbjct: 714 LVLQKLRKHKLYAKFSKCEFWLKEVAFLGHVISAGGVAVDPAKVEAVTEWKAPKSVTEI 772



Score = 100 bits (248), Expect(2) = 6e-51
Identities = 43/71 (60%), Positives = 59/71 (83%)
Frame = +1

Query: 1 KKDSTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQGASVFSRIDLKSGYHQIRIAP*D 180
KKDS+ RMC+DYRSLN++TIKN++P+PRIDD+ D+L+GA VFS+IDL+SGYHQ++I D
Sbjct: 587 KKDSSMRMCVDYRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTED 646

Query: 181 VHKTSLEQPSG 213
+ KT+ G
Sbjct: 647 IPKTAFSTRYG 657


>tr|Q2R4W7|Q2R4W7_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os11g27050 PE=4 SV=1
Length = 1469

Score = 125 bits (315), Expect(2) = 6e-51
Identities = 59/119 (49%), Positives = 81/119 (68%), Gaps = 1/119 (0%)
Frame = +3

Query: 201 TTFGLYEFLVMPFGLTNAPTTFNRMMDRIFHSYRS-FTGVFFNDFLIFSETEDEHYKHLV 377
T +GLYEF VM FGLTNAP F +M+++F Y F VF +D LI+S+ E+EH +HL
Sbjct: 654 TRYGLYEFTVMSFGLTNAPAYFMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAEHLQ 713

Query: 378 LVFEELRKHKLFVNAKKSEFFLKEIHYLGHIVSHNQVRMDPDKTQVVVEWPTPTTVHDV 554
LV E+LRKHKL+ K EF+LKE+ +LGH++S V +DP K + V EW P +V ++
Sbjct: 714 LVLEKLRKHKLYAKFSKCEFWLKEVAFLGHVISAGGVAVDPAKVEAVTEWKAPKSVTEI 772



Score = 98.6 bits (244), Expect(2) = 6e-51
Identities = 42/71 (59%), Positives = 58/71 (81%)
Frame = +1

Query: 1 KKDSTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQGASVFSRIDLKSGYHQIRIAP*D 180
KKD + RMC+DYRSLN++TIKN++P+PRIDD+ D+L+GA VFS+IDL+SGYHQ++I D
Sbjct: 587 KKDGSIRMCVDYRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTRD 646

Query: 181 VHKTSLEQPSG 213
+ KT+ G
Sbjct: 647 IPKTAFSTRYG 657


>tr|Q0D6S9|Q0D6S9_ORYSJ Os07g0444200 protein OS=Oryza sativa subsp.
japonica GN=Os07g0444200 PE=4 SV=1
Length = 1316

Score = 125 bits (314), Expect(2) = 8e-51
Identities = 59/119 (49%), Positives = 81/119 (68%), Gaps = 1/119 (0%)
Frame = +3

Query: 201 TTFGLYEFLVMPFGLTNAPTTFNRMMDRIFHSYRS-FTGVFFNDFLIFSETEDEHYKHLV 377
T +GLYEF VM FGLTNAP F +M+++F Y F VF +D LI+S+ E+EH +HL
Sbjct: 503 TRYGLYEFTVMSFGLTNAPAYFMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAEHLR 562

Query: 378 LVFEELRKHKLFVNAKKSEFFLKEIHYLGHIVSHNQVRMDPDKTQVVVEWPTPTTVHDV 554
LV E+LRKHKL+ K EF+LKE+ +LGH++S V +DP K + V EW P +V ++
Sbjct: 563 LVLEKLRKHKLYAKFSKCEFWLKEVAFLGHVISAGGVAVDPAKVEAVTEWKAPKSVTEI 621



Score = 98.6 bits (244), Expect(2) = 8e-51
Identities = 42/71 (59%), Positives = 58/71 (81%)
Frame = +1

Query: 1 KKDSTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQGASVFSRIDLKSGYHQIRIAP*D 180
KKD + RMC+DYRSLN++TIKN++P+PRIDD+ D+L+GA VFS+IDL+SGYHQ++I D
Sbjct: 436 KKDGSMRMCVDYRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTGD 495

Query: 181 VHKTSLEQPSG 213
+ KT+ G
Sbjct: 496 IPKTAFSTRYG 506


>tr|Q2RB45|Q2RB45_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os11g03250 PE=4 SV=1
Length = 1284

Score = 125 bits (313), Expect(2) = 8e-51
Identities = 58/121 (47%), Positives = 83/121 (68%), Gaps = 1/121 (0%)
Frame = +3

Query: 195 IRTTFGLYEFLVMPFGLTNAPTTFNRMMDRIFHSYRS-FTGVFFNDFLIFSETEDEHYKH 371
+ T +GLYEF VM FGLTNAP F +M+++F Y F VF +D LI+S+ E+EH +H
Sbjct: 652 LSTRYGLYEFTVMSFGLTNAPAYFMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAEH 711

Query: 372 LVLVFEELRKHKLFVNAKKSEFFLKEIHYLGHIVSHNQVRMDPDKTQVVVEWPTPTTVHD 551
L LV ++LRKHKL+ K EF+LKE+ +LGH++S V +DP K + V+EW P +V +
Sbjct: 712 LRLVLQKLRKHKLYAKFSKCEFWLKEVAFLGHVISAGGVAVDPAKVEAVMEWKAPKSVTE 771

Query: 552 V 554
+
Sbjct: 772 I 772



Score = 99.0 bits (245), Expect(2) = 8e-51
Identities = 42/71 (59%), Positives = 59/71 (83%)
Frame = +1

Query: 1 KKDSTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQGASVFSRIDLKSGYHQIRIAP*D 180
KKD + RMC+DYRSLN++TIKN++P+PRIDD+ D+L+GA +FS+IDL+SGYHQ++I D
Sbjct: 587 KKDGSMRMCVDYRSLNEVTIKNKYPLPRIDDLFDQLKGAKMFSKIDLRSGYHQLKIRTED 646

Query: 181 VHKTSLEQPSG 213
+ KT+L G
Sbjct: 647 IPKTALSTRYG 657


>tr|Q7XX57|Q7XX57_ORYSJ OSJNBb0049I21.6 protein OS=Oryza sativa
subsp. japonica GN=OSJNBb0049I21.6 PE=4 SV=2
Length = 1606

Score = 125 bits (313), Expect(2) = 1e-50
Identities = 59/119 (49%), Positives = 81/119 (68%), Gaps = 1/119 (0%)
Frame = +3

Query: 201 TTFGLYEFLVMPFGLTNAPTTFNRMMDRIFHSYRS-FTGVFFNDFLIFSETEDEHYKHLV 377
T +GLYEF VM FGLTNAP F +M+++F Y F VF +D LI+S+ E+EH +HL
Sbjct: 587 TRYGLYEFTVMSFGLTNAPAYFMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAEHLR 646

Query: 378 LVFEELRKHKLFVNAKKSEFFLKEIHYLGHIVSHNQVRMDPDKTQVVVEWPTPTTVHDV 554
LV E+LRKHKL+ K EF+LKE+ +LGH++S V +DP K + V EW P +V ++
Sbjct: 647 LVLEKLRKHKLYAKFSKCEFWLKELAFLGHVISAGGVAVDPAKVEAVTEWKAPKSVTEI 705



Score = 98.6 bits (244), Expect(2) = 1e-50
Identities = 42/71 (59%), Positives = 58/71 (81%)
Frame = +1

Query: 1 KKDSTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQGASVFSRIDLKSGYHQIRIAP*D 180
KKD + RMC+DYRSLN++TIKN++P+PRIDD+ D+L+GA VFS+IDL+SGYHQ++I D
Sbjct: 520 KKDGSMRMCVDYRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTGD 579

Query: 181 VHKTSLEQPSG 213
+ KT+ G
Sbjct: 580 IPKTAFSTRYG 590


>tr|Q7G774|Q7G774_ORYSJ Putative polyprotein (Retrotransposon protein,
putative, Ty3-gypsy subclass) OS=Oryza sativa subsp.
japonica GN=OSJNBa0034B05.13 PE=4 SV=1
Length = 1569

Score = 127 bits (319), Expect(2) = 2e-50
Identities = 61/119 (51%), Positives = 80/119 (67%), Gaps = 1/119 (0%)
Frame = +3

Query: 201 TTFGLYEFLVMPFGLTNAPTTFNRMMDRIFHSYRS-FTGVFFNDFLIFSETEDEHYKHLV 377
T +GLYEF VM FGLTNAP F +M+++F Y F VF +D LI+S+ EDEH +HL
Sbjct: 753 TRYGLYEFTVMSFGLTNAPAYFMNLMNKVFMDYLDKFVVVFIDDILIYSKDEDEHAEHLR 812

Query: 378 LVFEELRKHKLFVNAKKSEFFLKEIHYLGHIVSHNQVRMDPDKTQVVVEWPTPTTVHDV 554
LV E+LRKHKL+ K EF+LKE+ +LGH++S V MDP K + V EW P V ++
Sbjct: 813 LVLEKLRKHKLYAKFSKCEFWLKEVAFLGHVISAGGVAMDPAKVEAVTEWKAPKFVTEI 871



Score = 95.5 bits (236), Expect(2) = 2e-50
Identities = 41/71 (57%), Positives = 57/71 (80%)
Frame = +1

Query: 1 KKDSTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQGASVFSRIDLKSGYHQIRIAP*D 180
KKD + RMC+DYRSLN++TIKN++P+P IDD+ D+L+GA VFS+IDL+SGYHQ++I D
Sbjct: 686 KKDGSMRMCVDYRSLNEVTIKNKYPLPWIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTGD 745

Query: 181 VHKTSLEQPSG 213
+ KT+ G
Sbjct: 746 IPKTAFSTRYG 756


>tr|Q7XUA3|Q7XUA3_ORYSJ OSJNBa0019D11.8 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0019D11.8 PE=4 SV=1
Length = 1470

Score = 124 bits (311), Expect(2) = 2e-50
Identities = 58/119 (48%), Positives = 81/119 (68%), Gaps = 1/119 (0%)
Frame = +3

Query: 201 TTFGLYEFLVMPFGLTNAPTTFNRMMDRIFHSYRS-FTGVFFNDFLIFSETEDEHYKHLV 377
T +GLYEF VM FGLTNAP F +M+++F Y F VF +D LI+S+ E+EH +HL
Sbjct: 654 TRYGLYEFTVMSFGLTNAPAYFMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAEHLR 713

Query: 378 LVFEELRKHKLFVNAKKSEFFLKEIHYLGHIVSHNQVRMDPDKTQVVVEWPTPTTVHDV 554
LV ++LRKHKL+ K EF+LKE+ +LGH++S V +DP K + V EW P +V ++
Sbjct: 714 LVLQKLRKHKLYAKFSKCEFWLKEVAFLGHVISAGGVAVDPAKVEAVTEWKAPKSVTEI 772



Score = 98.6 bits (244), Expect(2) = 2e-50
Identities = 42/71 (59%), Positives = 58/71 (81%)
Frame = +1

Query: 1 KKDSTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQGASVFSRIDLKSGYHQIRIAP*D 180
KKD + RMC+DYRSLN++TIKN++P+PRIDD+ D+L+GA VFS+IDL+SGYHQ++I D
Sbjct: 587 KKDGSMRMCVDYRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTED 646

Query: 181 VHKTSLEQPSG 213
+ KT+ G
Sbjct: 647 IPKTAFSTRYG 657


>tr|Q2QR60|Q2QR60_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os12g28690 PE=4 SV=1
Length = 1470

Score = 124 bits (311), Expect(2) = 2e-50
Identities = 58/119 (48%), Positives = 81/119 (68%), Gaps = 1/119 (0%)
Frame = +3

Query: 201 TTFGLYEFLVMPFGLTNAPTTFNRMMDRIFHSYRS-FTGVFFNDFLIFSETEDEHYKHLV 377
T +GLYEF VM FGLTNAP F +M+++F Y F VF +D LI+S+ E+EH +HL
Sbjct: 654 TRYGLYEFTVMSFGLTNAPAYFMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAEHLR 713

Query: 378 LVFEELRKHKLFVNAKKSEFFLKEIHYLGHIVSHNQVRMDPDKTQVVVEWPTPTTVHDV 554
LV ++LRKHKL+ K EF+LKE+ +LGH++S V +DP K + V EW P +V ++
Sbjct: 714 LVLQKLRKHKLYAKFSKCEFWLKEVAFLGHVISAGGVAVDPAKVEAVTEWKAPKSVTEI 772



Score = 98.6 bits (244), Expect(2) = 2e-50
Identities = 42/71 (59%), Positives = 58/71 (81%)
Frame = +1

Query: 1 KKDSTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQGASVFSRIDLKSGYHQIRIAP*D 180
KKD + RMC+DYRSLN++TIKN++P+PRIDD+ D+L+GA VFS+IDL+SGYHQ++I D
Sbjct: 587 KKDGSMRMCVDYRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTED 646

Query: 181 VHKTSLEQPSG 213
+ KT+ G
Sbjct: 647 IPKTAFSTRYG 657


>tr|Q01I31|Q01I31_ORYSA OSIGBa0145G11.8 protein OS=Oryza sativa
GN=OSIGBa0145G11.8 PE=4 SV=1
Length = 1470

Score = 124 bits (311), Expect(2) = 2e-50
Identities = 58/119 (48%), Positives = 81/119 (68%), Gaps = 1/119 (0%)
Frame = +3

Query: 201 TTFGLYEFLVMPFGLTNAPTTFNRMMDRIFHSYRS-FTGVFFNDFLIFSETEDEHYKHLV 377
T +GLYEF VM FGLTNAP F +M+++F Y F VF +D LI+S+ E+EH +HL
Sbjct: 654 TRYGLYEFTVMSFGLTNAPAYFMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAEHLR 713

Query: 378 LVFEELRKHKLFVNAKKSEFFLKEIHYLGHIVSHNQVRMDPDKTQVVVEWPTPTTVHDV 554
LV ++LRKHKL+ K EF+LKE+ +LGH++S V +DP K + V EW P +V ++
Sbjct: 714 LVLQKLRKHKLYAKFSKCEFWLKEVAFLGHVISAGGVAVDPAKVEAVTEWKAPKSVTEI 772



Score = 98.6 bits (244), Expect(2) = 2e-50
Identities = 42/71 (59%), Positives = 58/71 (81%)
Frame = +1

Query: 1 KKDSTFRMCIDYRSLNKITIKNRFPIPRIDDILDKLQGASVFSRIDLKSGYHQIRIAP*D 180
KKD + RMC+DYRSLN++TIKN++P+PRIDD+ D+L+GA VFS+IDL+SGYHQ++I D
Sbjct: 587 KKDGSMRMCVDYRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTED 646

Query: 181 VHKTSLEQPSG 213
+ KT+ G
Sbjct: 647 IPKTAFSTRYG 657