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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919442
Clone id YMU001_000125_B07
Library
Length 468
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000125_B07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGTGGGCTGATTTTCAGCCATAAGTAGCGTTTATACTTATCTTCTTTGACAATGAAAACA
TCTTTCGAACCCTTTTTGTTCATACATGATACGTCTCCTTGGCCTCTTCGTTGCTTTGTA
TTTTTGGCCCACATCAAAGAATGCACATCTGTATTTATCAAATCCGAGAATTCATTGTGC
AACATGATCCCATGTTTCGACAAGAAGTATCACATTGAAGTCATTAGTAAGCTCATCAAT
GCCAATTCCCGCATTCCATGGATATCCGTTACAATTCCAAAAGCTTATTTGCAAGCGTGA
GTTGGTGTCATAGATCATGTGTCCCTATTTGTTGGGTGGACTTGCATCCTCCTCAAGTGG
CTTTTTTTCTTGAGATGACACCTTAACCTTCTTGCTTCTTTATTCATATGCTTTGCGACG
TACCTTTTTTTGCATAAGAGTGTGATCCTCATATACATTAAAACCCAT
■■Homology search results ■■ -
sp_hit_id Q6LTE0
Definition sp|Q6LTE0|HEMH_PHOPR Ferrochelatase OS=Photobacterium profundum
Align length 49
Score (bit) 32.3
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919442|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_B07.
         (468 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6LTE0|HEMH_PHOPR Ferrochelatase OS=Photobacterium profundum ...    32   1.1  
sp|P06456|VL1_FPVL Major capsid protein L1 (Fragment) OS=Avian p...    30   4.1  
sp|Q5UQ68|YR505_MIMIV Uncharacterized protein R505 OS=Acanthamoe...    30   5.3  
sp|Q0ZJ30|RPOC2_VITVI DNA-directed RNA polymerase subunit beta''...    30   6.9  
sp|P06333|TCB1_RABIT T-cell receptor beta chain ANA 11 OS=Orycto...    29   8.9  

>sp|Q6LTE0|HEMH_PHOPR Ferrochelatase OS=Photobacterium profundum
           GN=hemH PE=3 SV=2
          Length = 322

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 112 CFVFLAHIKE-CTSVFIKSENSLCNMIPCF-DKKYHIEVISKLINANSR 252
           C   L  I E C   FIK+   + N+IPC  D + HI ++  L+  +S+
Sbjct: 272 CLETLEEIAEQCKETFIKAGGDVFNLIPCLNDNEAHIRMMKNLVTQHSQ 320


>sp|P06456|VL1_FPVL Major capsid protein L1 (Fragment) OS=Avian
           papillomavirus fpv-l GN=L1 PE=3 SV=1
          Length = 110

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -1

Query: 324 GHMIYDTNSRLQISFWNCNGYPWNAGIGIDELTNDFNVILLVETWDHVAQ 175
           G +I    +    S+W  NG  WN  + +  L N  NVI+ + +    AQ
Sbjct: 28  GSVITSDTNLFNRSYWTNNGILWNENLFVTVLDNSRNVIMKISSLAEGAQ 77


>sp|Q5UQ68|YR505_MIMIV Uncharacterized protein R505 OS=Acanthamoeba
           polyphaga mimivirus GN=MIMI_R505 PE=4 SV=1
          Length = 405

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
 Frame = -1

Query: 363 KPLEEDASPPNK*GH----MIYDTNS----RLQISFWNCNGYPWNAGIGIDELTNDFNVI 208
           K + ++ASP N        +IY  N+    R+ I+ WN +G  WNA +   +   + N  
Sbjct: 3   KKVNKNASPKNNSDSESKTIIYRPNTIDCDRIDIADWNKDGKQWNAWLNYQDPNLNSNTK 62

Query: 207 LLVET 193
           +L++T
Sbjct: 63  ILLQT 67


>sp|Q0ZJ30|RPOC2_VITVI DNA-directed RNA polymerase subunit beta''
            OS=Vitis vinifera GN=rpoC2 PE=3 SV=1
          Length = 1394

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 136  KECTSVFIKSENSLCNMIPCFDKKYHIEVISKLINANSRIP 258
            KEC S+ I S ++   M P  D KYH  VI + I  ++ IP
Sbjct: 941  KECQSLIILSSSNCSRMGPFNDVKYH-NVIKESIKKDTPIP 980


>sp|P06333|TCB1_RABIT T-cell receptor beta chain ANA 11
           OS=Oryctolagus cuniculus PE=4 SV=1
          Length = 319

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 119 YFWPTSKNAHLYLSNPRIHCAT*SHVSTRS 208
           + WP+  + H YL +P  H  T +H  T +
Sbjct: 44  FLWPSHTHRHSYLLHPHTHVCTHTHTCTHT 73
tr_hit_id B1X2N8
Definition tr|B1X2N8|B1X2N8_CYAA5 Putative uncharacterized protein OS=Cyanothece (strain ATCC 51142)
Align length 106
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919442|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_B07.
         (468 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1X2N8|B1X2N8_CYAA5 Putative uncharacterized protein OS=Cyano...    35   1.9  
tr|A8BN55|A8BN55_GIALA Putative uncharacterized protein OS=Giard...    35   1.9  
tr|A3AJI9|A3AJI9_ORYSJ Putative uncharacterized protein OS=Oryza...    34   4.2  
tr|A6SFB1|A6SFB1_BOTFB Putative uncharacterized protein OS=Botry...    33   5.5  
tr|Q2GFZ0|Q2GFZ0_EHRCR Glutathione S-transferase family protein ...    33   7.1  
tr|A9E1S8|A9E1S8_9FLAO Putative uncharacterized protein OS=Kordi...    33   7.1  
tr|P88003|P88003_9HIV1 Envelope glycoprotein, C2-V5 region (Frag...    33   9.3  
tr|A9XWC8|A9XWC8_9ROSI DNA-directed RNA polymerase (Fragment) OS...    33   9.3  
tr|A9XW90|A9XW90_9ROSI DNA-directed RNA polymerase (Fragment) OS...    33   9.3  

>tr|B1X2N8|B1X2N8_CYAA5 Putative uncharacterized protein
           OS=Cyanothece (strain ATCC 51142) GN=cce_5053 PE=4 SV=1
          Length = 273

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 25/106 (23%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
 Frame = +1

Query: 121 FLAHIKECTSVFIKSENSLCNMIPCFDKKYHIEVISKL-INANSRIPWISVTIPKAYLQA 297
           F+ +I++  + FI  E  + N+   + + Y   +  ++ I  ++ I W+S +IP   + A
Sbjct: 131 FVVYIEKSRTKFIFFEKEMINICQNYLEDYFKPLDKEVVIEKHNHILWVSESIPNPQIFA 190

Query: 298 *VGVIDHVSLFVGWTCILLKWLFFLR*HLNLLASLFI-CFATYLFL 432
              + +   + +    I+L     L   +NL+ SL + CF  +LF+
Sbjct: 191 NYAIYEIDQILITNLSIILYGFLILAYFVNLITSLTVSCFIFFLFV 236


>tr|A8BN55|A8BN55_GIALA Putative uncharacterized protein OS=Giardia
           lamblia ATCC 50803 GN=GL50803_89117 PE=4 SV=1
          Length = 2842

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 34  YLSSLTMKTSFEPFLFIHDTSPWPLRCFVFLAHIKECTSVFIKSENSLCNMIPCF 198
           Y+ +++  TSFE    I  T+ +   C +FL   K C ++F +S  + CN    F
Sbjct: 805 YMHTISTTTSFE----IESTAVYCPNCSIFLGCCKRCATIFARSHQAECNNFVAF 855


>tr|A3AJI9|A3AJI9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_010961 PE=4 SV=1
          Length = 695

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +1

Query: 124 LAHIKECTSVFIKSENSLCNMIPCFDKKYHIEVISKLINANSRIPWISV 270
           +A +KEC +VF   E+ +   I  F KKY  E+   L N+  R  W+++
Sbjct: 247 MALVKECGAVFGTKEHFIATEI--FTKKYEREIFMTLDNSEERFAWLTM 293


>tr|A6SFB1|A6SFB1_BOTFB Putative uncharacterized protein
            OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_11159
            PE=3 SV=1
          Length = 1606

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 39/149 (26%), Positives = 59/149 (39%), Gaps = 10/149 (6%)
 Frame = +1

Query: 52   MKTSFEPFL---FIHDTSPWPLRCFVFLAHIKECTSVFIKSENSLCNMIPCFDKKYHIEV 222
            +KTSF  F    F  D+   PL  FV L  I   TSV I        M P F++  ++  
Sbjct: 986  IKTSFRKFRRVKFEPDSLSIPLLVFVTLGLICS-TSVSI--------MYPVFERINNVRA 1036

Query: 223  ISKLINANSRIPWISVTIPKAYLQA*VGVIDHVSLFVGWTCILLKWLFFLR*HLNLLASL 402
            +    + +S   W++  I   ++     V+    +F G    +     F+     L A L
Sbjct: 1037 LQYSNSVSSAALWMAYLIFDMHIGLITSVVTWAIIFAGGNSRIWYESTFI-----LFAML 1091

Query: 403  FICFATY-------LFLHKSVILIYIKTH 468
              C ATY       LFL K+   + +  H
Sbjct: 1092 LFCIATYLGLYICSLFLRKAAFAVAVGVH 1120


>tr|Q2GFZ0|Q2GFZ0_EHRCR Glutathione S-transferase family protein
           OS=Ehrlichia chaffeensis (strain Arkansas) GN=ECH_0847
           PE=4 SV=1
          Length = 221

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
 Frame = +1

Query: 31  LYLSSLTMKTSFE-PFLFIHDTSPWPLRCFVFLAHIKECT--SVFIKSENSLCNMIPCFD 201
           LY+ S   K  +   + F H+ + + +   V   +IK  +  S FI++     N++P   
Sbjct: 84  LYIRSTVRKLIYWIDYKFYHEITRYIINEKVSKYYIKNASPDSRFIQAARQ--NLLP--- 138

Query: 202 KKYHIEVISKLINANSRIPWISVTIPKAYLQA*VGVIDHVSLFVGW--TCILLKW 360
              HI  I +L+N NS I     T+    L A + V+D +++F  W  T IL +W
Sbjct: 139 ---HIRYIERLLNNNSWIACNEFTLADITLAAHISVLDFMNIF-PWHSTAILKEW 189


>tr|A9E1S8|A9E1S8_9FLAO Putative uncharacterized protein OS=Kordia
           algicida OT-1 GN=KAOT1_22496 PE=4 SV=1
          Length = 132

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
 Frame = -1

Query: 288 ISFWNCNGYPWNAGIGIDEL----TNDFNVILLVETWDHVAQ*ILGFDKYRCAFFDVGQK 121
           +SF+ CN +P    + + EL     ND  ++L V T + +AQ  +  D     FF+    
Sbjct: 17  LSFFGCNNFPKENNVTVQELHDVLANDEVIVLDVRTPEEIAQGKIKSDALEANFFEDNFI 76

Query: 120 YKATKR-PRRRIMY 82
            KAT + P+ + +Y
Sbjct: 77  EKATAQLPKDKDVY 90


>tr|P88003|P88003_9HIV1 Envelope glycoprotein, C2-V5 region
           (Fragment) OS=Human immunodeficiency virus 1 GN=env PE=4
           SV=1
          Length = 217

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -1

Query: 324 GHMIYDTNSRLQISFWNCNGYPWNAGIGIDELTNDFNVILLVETWDHVAQ 175
           G   Y   ++L  S WN NG  WN   G D +T    + L++  W  V +
Sbjct: 120 GEFFYCNTTQLFTSTWNANG-TWNGTEGNDTITLTCKIKLIINMWQGVGK 168


>tr|A9XWC8|A9XWC8_9ROSI DNA-directed RNA polymerase (Fragment)
            OS=Viviania marifolia GN=rpoC2 PE=3 SV=1
          Length = 1281

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +1

Query: 124  LAHIKECTSVFIKSENSLCNMIPCFDKKYHIEVISKLI---NANSRIPWISVTI 276
            L+  KEC S+ I S ++   M P  D KYH  ++ K     N  +RIP I   I
Sbjct: 906  LSRKKECQSLIILSSSNYFRMSPLKDFKYHAVIVRKKAIKRNLETRIPIIKSQI 959


>tr|A9XW90|A9XW90_9ROSI DNA-directed RNA polymerase (Fragment)
            OS=Krameria lanceolata GN=rpoC2 PE=3 SV=1
          Length = 1027

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 21/48 (43%), Positives = 26/48 (54%)
 Frame = +1

Query: 106  LRCFVFLAHIKECTSVFIKSENSLCNMIPCFDKKYHIEVISKLINANS 249
            LR F+     KEC S+ I S ++   M P  D KYH  VI + IN NS
Sbjct: 899  LRAFLNRNKNKECRSLIILSSSNCFRMGPFNDIKYH-NVIKESINRNS 945