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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919450
Clone id YMU001_000125_C03
Library
Length 480
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000125_C03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTGATCCAATTTTTGTTTTTTTTTTTTCTATTTACAAAATTTGCAATACATTTC
TCAATGCTCATTTTTGCCCTTTCAAAGGTGTTTTGCAAATACTCTCTACCATGGGTGACA
TACTTCATTGGAAAGATATTTCACAATTCCTTGCTCTTGAAAACCATAACAAAACTTTCA
CCAATAGTGACAAAACCGGTGTACTCCTGAAACCATCAACTGAAGGGCTTACATGGAAGA
ACTATAAATGGACAAACTATACAGAAATTTGGTGAGAATGCTTTACAAGCCACCTCTCCC
ATTGTACTACCTCGAACTCGAACCACATCCCCACTTCTCATCCTCGTACTCTGAAACAAA
ACCTCATCTCCACATCCAATGTACACTCCTCCCTTTCAAAAAACCAACTTCAGGTTAAAG
GTTACTTCGCCTTGATCTCAGACCTGCAAGTATCTTTTAAGAAACAACTGATGGCCTTAT
■■Homology search results ■■ -
sp_hit_id Q54JB0
Definition sp|Q54JB0|DDI1_DICDI Protein DDI1 homolog OS=Dictyostelium discoideum
Align length 50
Score (bit) 30.0
E-value 4.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919450|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_C03.
         (441 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54JB0|DDI1_DICDI Protein DDI1 homolog OS=Dictyostelium disco...    30   4.4  
sp|Q73K18|G6PI_TREDE Glucose-6-phosphate isomerase OS=Treponema ...    30   4.5  
sp|P52225|CCMF_PSEFL Cytochrome c-type biogenesis protein ccmF O...    29   7.5  
sp|Q32BQ4|TTDT_SHIDS L-tartrate/succinate antiporter OS=Shigella...    29   7.7  
sp|Q8BH89|WF15A_MOUSE WAP four-disulfide core domain protein 15A...    29   9.8  
sp|P28006|GAC1_YEAST Serine/threonine-protein phosphatase 1 regu...    29   9.8  
sp|O59817|EFR3_SCHPO Protein efr3 OS=Schizosaccharomyces pombe G...    29   10.0 

>sp|Q54JB0|DDI1_DICDI Protein DDI1 homolog OS=Dictyostelium
           discoideum GN=ddi1 PE=3 SV=1
          Length = 450

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 45  KGVLQILSTMGDILHWKDISQFLALENHNKTFTNSDKTGVLLKPSTEGLT 194
           +GVLQI +   + LH KD+ + L  E ++        T   L PST   T
Sbjct: 306 RGVLQIANEKIEFLHEKDLKEILNKEQNDLEEDTKKATANSLSPSTTSTT 355


>sp|Q73K18|G6PI_TREDE Glucose-6-phosphate isomerase OS=Treponema
           denticola GN=pgi PE=3 SV=1
          Length = 525

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 19/73 (26%), Positives = 31/73 (42%)
 Frame = +1

Query: 208 NGQTIQKFGENALQATSPIVLPRTRTTSPLLILVL*NKTSSPHPMYTPPFQKTNFRLKVT 387
           NG+T+ +FGE     T P++     T        L ++ S   P+    F+K+   L + 
Sbjct: 358 NGKTVNRFGEKVSYKTGPVIFGEPGTNGQHSFYQLLHQGSDIIPLQFIGFKKSQIGLDIE 417

Query: 388 SP*SQTCKYLLRN 426
           S  S   + L  N
Sbjct: 418 SEGSTNMQKLNAN 430


>sp|P52225|CCMF_PSEFL Cytochrome c-type biogenesis protein ccmF
           OS=Pseudomonas fluorescens GN=ccmF PE=3 SV=1
          Length = 660

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 18  FLNAHFCPFKGVLQILSTMGDILHWKD 98
           + NA F P  G+L ++  +G ++ WKD
Sbjct: 394 YFNALFIPLMGLLMVVMAVGVLVRWKD 420


>sp|Q32BQ4|TTDT_SHIDS L-tartrate/succinate antiporter OS=Shigella
           dysenteriae serotype 1 (strain Sd197) GN=ttdT PE=3 SV=1
          Length = 487

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 18/81 (22%), Positives = 37/81 (45%)
 Frame = +1

Query: 22  SMLIFALSKVFCKYSLPWVTYFIGKIFHNSLLLKTITKLSPIVTKPVYS*NHQLKGLHGR 201
           ++L+  L K     +L W  +F+G +  + LL+  + +L+ ++  PV             
Sbjct: 215 NLLLIGLMKSASHATLSWGDWFLGMLPLSILLVLLVPRLAYVLYPPVLK----------- 263

Query: 202 TINGQTIQKFGENALQATSPI 264
             +G  + ++ E  LQA  P+
Sbjct: 264 --SGDQVPRWAETELQAMGPL 282


>sp|Q8BH89|WF15A_MOUSE WAP four-disulfide core domain protein 15A
           OS=Mus musculus GN=Wfdc15a PE=2 SV=1
          Length = 80

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -2

Query: 323 VLFQSTRMRSGDVVRVRGSTMGEVACKAFSPNFCIVCPFIVLP 195
           +LF +T +    + + R +  G    + + P F + CPF++LP
Sbjct: 7   LLFTTTILLCLSMAQPRATRKGVTPKQGYCPEFLLDCPFVLLP 49


>sp|P28006|GAC1_YEAST Serine/threonine-protein phosphatase 1
           regulatory subunit GAC1 OS=Saccharomyces cerevisiae
           GN=GAC1 PE=2 SV=2
          Length = 793

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 26/94 (27%), Positives = 40/94 (42%)
 Frame = +3

Query: 117 LENHNKTFTNSDKTGVLLKPSTEGLTWKNYKWTNYTEIW*ECFTSHLSHCTTSNSNHIPT 296
           ++ +NKT T ++ T  L+KPS E  T K  K                   +++NS   P+
Sbjct: 618 MDENNKTSTINNSTDTLIKPSKENGTVKENK-------------------SSANSTSAPS 658

Query: 297 SHPRTLKQNLISTSNVHSSLSKNQLQVKGYFALI 398
           S      QN  ST     S  K+ L+   Y +L+
Sbjct: 659 S-----SQNRASTILNDHSNGKSDLKYVNYQSLL 687


>sp|O59817|EFR3_SCHPO Protein efr3 OS=Schizosaccharomyces pombe
           GN=efr3 PE=1 SV=1
          Length = 798

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +1

Query: 256 SPIVLPRTRTTS---PLLILVL*NKTSSPHPMYTPPFQKT 366
           SP  +  TR TS   PLL ++  N+  SP P+ +PP+ +T
Sbjct: 759 SPSEINLTRQTSNRVPLLDMLNLNRAMSPTPIQSPPYVRT 798
tr_hit_id B6FTK5
Definition tr|B6FTK5|B6FTK5_9CLOT Putative uncharacterized protein OS=Clostridium nexile DSM 1787
Align length 36
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919450|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_C03.
         (441 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6FTK5|B6FTK5_9CLOT Putative uncharacterized protein OS=Clost...    35   2.4  
tr|B0TYA9|B0TYA9_FRAP2 Amino acid-polyamine-organocation (APC) s...    34   3.1  
tr|A0Q5X3|A0Q5X3_FRATN Amino acid-polyamine-organocation (APC) s...    34   3.1  
tr|B4ATH7|B4ATH7_FRANO Membrane protein, putative OS=Francisella...    34   3.1  
tr|A7JLE8|A7JLE8_FRANO Putative uncharacterized protein OS=Franc...    34   3.1  
tr|A7JH97|A7JH97_FRANO Putative uncharacterized protein OS=Franc...    34   3.1  
tr|A4KS66|A4KS66_FRATU Amino acid-polyamine-organocation (APC) s...    34   3.1  
tr|Q29ME9|Q29ME9_DROPS GA17299 OS=Drosophila pseudoobscura pseud...    34   3.2  
tr|Q5NT92|Q5NT92_9PSEU Putative uncharacterized protein OS=Amyco...    34   4.1  
tr|B4G9C8|B4G9C8_DROPE GL19453 OS=Drosophila persimilis GN=GL194...    33   5.4  
tr|B3RNH3|B3RNH3_TRIAD Putative uncharacterized protein OS=Trich...    33   5.4  
tr|Q1VT74|Q1VT74_9FLAO Aldehyde dehydrogenase OS=Psychroflexus t...    33   9.2  

>tr|B6FTK5|B6FTK5_9CLOT Putative uncharacterized protein
           OS=Clostridium nexile DSM 1787 GN=CLONEX_03482 PE=4 SV=1
          Length = 525

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = +3

Query: 87  HWKDISQ-FLALENHNKTFTNSDKTGVLLKPSTEGL 191
           H++DI+Q  + L N+N T T  DK+G L+K +T GL
Sbjct: 335 HYEDINQRLIKLSNYNYTITLKDKSGELIKTTTLGL 370


>tr|B0TYA9|B0TYA9_FRAP2 Amino acid-polyamine-organocation (APC)
           superfamily protein OS=Francisella philomiragia subsp.
           philomiragia (strain ATCC 25017) GN=Fphi_0130 PE=3 SV=1
          Length = 536

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +1

Query: 7   FAIHFSMLIFALSKVFCKYSLPWVTYFIGKIFHNSLLLKTITKLSPIVTKPVYS 168
           + ++F  ++F L      +S+   +  +G + HN  L   + KLSPI+ KP+Y+
Sbjct: 299 YPLYFGAIVFPLMAGLIYFSIAMKS--LGAMVHNGYLPSILGKLSPIMQKPIYA 350


>tr|A0Q5X3|A0Q5X3_FRATN Amino acid-polyamine-organocation (APC)
           superfamily protein OS=Francisella tularensis subsp.
           novicida (strain U112) GN=FTN_0747 PE=4 SV=1
          Length = 536

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +1

Query: 7   FAIHFSMLIFALSKVFCKYSLPWVTYFIGKIFHNSLLLKTITKLSPIVTKPVYS 168
           + ++F  +IF L      +S+   +  +G + HN  L   + KLSPI+ KP+Y+
Sbjct: 299 YPLYFGAIIFPLMAGLIYFSIALKS--LGAMVHNGYLPSILGKLSPIMKKPIYA 350


>tr|B4ATH7|B4ATH7_FRANO Membrane protein, putative OS=Francisella
           novicida FTE GN=FTE_0989 PE=4 SV=1
          Length = 536

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +1

Query: 7   FAIHFSMLIFALSKVFCKYSLPWVTYFIGKIFHNSLLLKTITKLSPIVTKPVYS 168
           + ++F  +IF L      +S+   +  +G + HN  L   + KLSPI+ KP+Y+
Sbjct: 299 YPLYFGAIIFPLMAGLIYFSIALKS--LGAMVHNGYLPSILGKLSPIMKKPIYA 350


>tr|A7JLE8|A7JLE8_FRANO Putative uncharacterized protein
           OS=Francisella novicida GA99-3548 GN=FTDG_00328 PE=4
           SV=1
          Length = 536

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +1

Query: 7   FAIHFSMLIFALSKVFCKYSLPWVTYFIGKIFHNSLLLKTITKLSPIVTKPVYS 168
           + ++F  +IF L      +S+   +  +G + HN  L   + KLSPI+ KP+Y+
Sbjct: 299 YPLYFGAIIFPLMAGLIYFSIALKS--LGAMVHNGYLPSILGKLSPIMKKPIYA 350


>tr|A7JH97|A7JH97_FRANO Putative uncharacterized protein
           OS=Francisella novicida GA99-3549 GN=FTCG_00273 PE=4
           SV=1
          Length = 525

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +1

Query: 7   FAIHFSMLIFALSKVFCKYSLPWVTYFIGKIFHNSLLLKTITKLSPIVTKPVYS 168
           + ++F  +IF L      +S+   +  +G + HN  L   + KLSPI+ KP+Y+
Sbjct: 288 YPLYFGAIIFPLMAGLIYFSIALKS--LGAMVHNGYLPSILGKLSPIMKKPIYA 339


>tr|A4KS66|A4KS66_FRATU Amino acid-polyamine-organocation (APC)
           superfamily protein OS=Francisella tularensis subsp.
           holarctica 257 GN=FTHG_01257 PE=4 SV=1
          Length = 438

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +1

Query: 7   FAIHFSMLIFALSKVFCKYSLPWVTYFIGKIFHNSLLLKTITKLSPIVTKPVYS 168
           + ++F  +IF L      +S+   +  +G + HN  L   + KLSPI+ KP+Y+
Sbjct: 288 YPLYFGAIIFPLMAGLIYFSIALKS--LGAMVHNGYLPSILGKLSPIMKKPIYA 339


>tr|Q29ME9|Q29ME9_DROPS GA17299 OS=Drosophila pseudoobscura
            pseudoobscura GN=GA17299 PE=4 SV=2
          Length = 1002

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 23/54 (42%), Positives = 33/54 (61%)
 Frame = +3

Query: 270  TSNSNHIPTSHPRTLKQNLISTSNVHSSLSKNQLQVKGYFALISDLQVSFKKQL 431
            T+++ H+P +H +TLK   IS SNV SS  K QL  K +F  I+  + S  KQ+
Sbjct: 917  TASTRHLP-NHLQTLKPKPISASNVRSSAPKQQL-TKDFFGRITH-KTSTAKQI 967


>tr|Q5NT92|Q5NT92_9PSEU Putative uncharacterized protein
           OS=Amycolatopsis sp. #8 PE=4 SV=1
          Length = 167

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
 Frame = +1

Query: 196 GRTINGQTIQKFGENALQA----TSPIVLPRTRTTSPLLILVL*NKTSSPHPMYTPPFQK 363
           GRT +GQT+Q  G + L+     TSP+V+P    T+P+L+ +   K     P  TP F+ 
Sbjct: 108 GRTRSGQTLQGIGWSRLKVTSRRTSPLVIPAHHPTAPVLLQLGLRK-----PDGTPLFRL 162

Query: 364 TNFRL 378
              RL
Sbjct: 163 PRSRL 167


>tr|B4G9C8|B4G9C8_DROPE GL19453 OS=Drosophila persimilis GN=GL19453
           PE=4 SV=1
          Length = 756

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 23/54 (42%), Positives = 33/54 (61%)
 Frame = +3

Query: 270 TSNSNHIPTSHPRTLKQNLISTSNVHSSLSKNQLQVKGYFALISDLQVSFKKQL 431
           T+ ++H+P +H +TLK   IS SNV SS  K QL  K +F  I+  + S  KQ+
Sbjct: 671 TAATSHLP-NHLQTLKPKPISASNVRSSAPKQQL-TKDFFGRITH-KTSTAKQI 721