NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919455
Clone id YMU001_000125_C08
Library
Length 516
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000125_C08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTAACATGGCCGAAAGTCCTTGTTGAACTTTCAAGAAGTAATTACAATGTATTGGCTGTT
TGAAACATCAGTTTGATCACCAGATATTGGTGATTGCTTAAACTGTGCACGCTCTCCGGC
AAAGCCAAGTCCCTGACAACACAGTGTTGGTCTGGGTTAAAAGGTATAGACCAATGATAG
CTACAGAACTCCAACCAAGAGGAAAACTGCTGGCCACATAAAACAAGTTCTGCACCCATC
TTTGCAGTCCTACAAACCTTCTTTCATAATACACATTGGTCCAGCAGGCTCTCTCAAGAA
AGGGTTCTGATACATGGCTGAGGTCTTAAGATCCTCACCAAATAATCTCGAATCTCTGGA
ATGATTCTGTGTATCAATGCTGGATACCCTGTCATGGTACACATTTGCTTGTGCTGTTCG
AGGATAAATAAAACACATGTATGCCGCAGCGATAAAGCATGGTATGCCTCTGTCAAGTCG
TACACAATCGCCACATTGTCAACAGTCAAATCCTGC
■■Homology search results ■■ -
sp_hit_id P05979
Definition sp|P05979|PGH1_SHEEP Prostaglandin G/H synthase 1 OS=Ovis aries
Align length 50
Score (bit) 32.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919455|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_C08.
         (516 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P05979|PGH1_SHEEP Prostaglandin G/H synthase 1 OS=Ovis aries ...    32   1.8  
sp|P22437|PGH1_MOUSE Prostaglandin G/H synthase 1 OS=Mus musculu...    32   1.8  
sp|Q63921|PGH1_RAT Prostaglandin G/H synthase 1 OS=Rattus norveg...    32   2.3  
sp|O62664|PGH1_BOVIN Prostaglandin G/H synthase 1 OS=Bos taurus ...    31   3.0  
sp|Q89AQ7|MTNN_BUCBP 5'-methylthioadenosine/S-adenosylhomocystei...    30   6.7  
sp|Q6PFY1|FCSD1_MOUSE FCH and double SH3 domains protein 1 OS=Mu...    30   8.7  

>sp|P05979|PGH1_SHEEP Prostaglandin G/H synthase 1 OS=Ovis aries
           GN=PTGS1 PE=1 SV=2
          Length = 600

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = -2

Query: 464 YHALSLRHTCVLFILEQHKQMCTMTGYPALIHRIIPEIRDYLVRILRPQP 315
           Y+    +  CV F L++++  CT TGY    +  IPEI  +L   LRP P
Sbjct: 38  YYPCQHQGICVRFGLDRYQCDCTRTGYSG-PNCTIPEIWTWLRTTLRPSP 86


>sp|P22437|PGH1_MOUSE Prostaglandin G/H synthase 1 OS=Mus musculus
           GN=Ptgs1 PE=2 SV=1
          Length = 602

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = -2

Query: 464 YHALSLRHTCVLFILEQHKQMCTMTGYPALIHRIIPEIRDYLVRILRPQP 315
           Y+    +  CV F L+ ++  CT TGY    +  IPEI  +L   LRP P
Sbjct: 40  YYPCQNQGVCVRFGLDNYQCDCTRTGYSG-PNCTIPEIWTWLRNSLRPSP 88


>sp|Q63921|PGH1_RAT Prostaglandin G/H synthase 1 OS=Rattus
           norvegicus GN=Ptgs1 PE=2 SV=2
          Length = 602

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = -2

Query: 464 YHALSLRHTCVLFILEQHKQMCTMTGYPALIHRIIPEIRDYLVRILRPQP 315
           Y+    +  CV F L+ ++  CT TGY    +  IPEI  +L   LRP P
Sbjct: 40  YYPCQNQGVCVRFGLDHYQCDCTRTGYSG-PNCTIPEIWTWLRSSLRPSP 88


>sp|O62664|PGH1_BOVIN Prostaglandin G/H synthase 1 OS=Bos taurus
           GN=PTGS1 PE=2 SV=2
          Length = 600

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = -2

Query: 464 YHALSLRHTCVLFILEQHKQMCTMTGYPALIHRIIPEIRDYLVRILRPQP 315
           Y+    +  CV F L++++  CT TGY    +  IPEI  +L   LRP P
Sbjct: 38  YYPCQHQGICVRFGLDRYQCDCTRTGYYG-PNCTIPEIWTWLRTTLRPSP 86


>sp|Q89AQ7|MTNN_BUCBP 5'-methylthioadenosine/S-adenosylhomocysteine
           nucleosidase OS=Buchnera aphidicola subsp. Baizongia
           pistaciae GN=mtnN PE=3 SV=1
          Length = 252

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = +2

Query: 242 LQSYKPSFIIHIGPAGSLKK 301
           LQ YK  FII+IG AGSL K
Sbjct: 71  LQKYKVKFIINIGSAGSLNK 90


>sp|Q6PFY1|FCSD1_MOUSE FCH and double SH3 domains protein 1 OS=Mus
           musculus GN=Fchsd1 PE=2 SV=1
          Length = 688

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 197 WLEFCSYHWSIPFNPDQHCVVRDLALPESVHSLSN 93
           W++  + H    F P+++    DL+LPES H + N
Sbjct: 504 WVKARNQHGEAGFVPERYLNFPDLSLPESCHGIDN 538
tr_hit_id A9SKE0
Definition tr|A9SKE0|A9SKE0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 67
Score (bit) 107.0
E-value 5.0e-22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919455|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_C08.
         (516 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SKE0|A9SKE0_PHYPA Predicted protein OS=Physcomitrella paten...   107   5e-22
tr|A9SHX6|A9SHX6_PHYPA Predicted protein OS=Physcomitrella paten...   103   5e-21
tr|Q688N3|Q688N3_ORYSJ Os05g0398100 protein OS=Oryza sativa subs...    87   4e-16
tr|B8AY14|B8AY14_ORYSI Putative uncharacterized protein OS=Oryza...    87   4e-16
tr|A3B3T4|A3B3T4_ORYSJ Putative uncharacterized protein OS=Oryza...    87   4e-16
tr|A7NWJ3|A7NWJ3_VITVI Chromosome chr5 scaffold_2, whole genome ...    80   8e-14
tr|B8A3I0|B8A3I0_MAIZE Putative uncharacterized protein OS=Zea m...    79   1e-13
tr|A7PU99|A7PU99_VITVI Chromosome chr7 scaffold_31, whole genome...    68   3e-10
tr|Q56ZQ9|Q56ZQ9_ARATH Putative uncharacterized protein At5g1933...    66   9e-10
tr|A5ASC1|A5ASC1_VITVI Putative uncharacterized protein OS=Vitis...    58   2e-07
tr|Q9FYA4|Q9FYA4_ARATH Putative uncharacterized protein T19L5_20...    54   3e-06
tr|Q8RY88|Q8RY88_ARATH Putative uncharacterized protein At5g1306...    54   3e-06
tr|B7U179|B7U179_ARATH ABAP1 OS=Arabidopsis thaliana GN=ABAP1 PE...    54   3e-06
tr|A7R8X3|A7R8X3_VITVI Chromosome undetermined scaffold_3067, wh...    54   6e-06
tr|A7R5F6|A7R5F6_VITVI Chromosome undetermined scaffold_955, who...    54   6e-06
tr|A7R478|A7R478_VITVI Chromosome undetermined scaffold_624, who...    53   1e-05
tr|A7QXT0|A7QXT0_VITVI Chromosome undetermined scaffold_230, who...    53   1e-05
tr|A5C2B5|A5C2B5_VITVI Putative uncharacterized protein OS=Vitis...    53   1e-05
tr|A5AU57|A5AU57_VITVI Putative uncharacterized protein (Fragmen...    50   5e-05
tr|B6NB41|B6NB41_BRAFL Putative uncharacterized protein OS=Branc...    38   0.26 
tr|Q16XE5|Q16XE5_AEDAE Cation-transporting atpase fly OS=Aedes a...    37   0.75 
tr|B7GB01|B7GB01_PHATR Predicted protein OS=Phaeodactylum tricor...    34   3.7  
tr|B0X8H8|B0X8H8_CULQU Cation-transporting ATPase OS=Culex quinq...    34   3.7  
tr|B8BVE2|B8BVE2_THAPS Predicted protein OS=Thalassiosira pseudo...    34   4.9  
tr|A7QC52|A7QC52_VITVI Chromosome chr10 scaffold_76, whole genom...    33   6.4  
tr|A8RUC0|A8RUC0_9CLOT Putative uncharacterized protein OS=Clost...    33   8.3  

>tr|A9SKE0|A9SKE0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_106616 PE=4 SV=1
          Length = 695

 Score =  107 bits (266), Expect = 5e-22
 Identities = 49/67 (73%), Positives = 59/67 (88%)
 Frame = -2

Query: 515 QDLTVDNVAIVYDLTEAYHALSLRHTCVLFILEQHKQMCTMTGYPALIHRIIPEIRDYLV 336
           Q+LT++ +  VYDL EAYHALSLR TCVLFIL+ H+QMC++TGYPAL+HRI PEIR+YL 
Sbjct: 625 QNLTLETLMNVYDLAEAYHALSLRDTCVLFILKHHEQMCSITGYPALLHRITPEIREYLR 684

Query: 335 RILRPQP 315
           RILRPQP
Sbjct: 685 RILRPQP 691


>tr|A9SHX6|A9SHX6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_106476 PE=4 SV=1
          Length = 698

 Score =  103 bits (257), Expect = 5e-21
 Identities = 49/67 (73%), Positives = 57/67 (85%)
 Frame = -2

Query: 515 QDLTVDNVAIVYDLTEAYHALSLRHTCVLFILEQHKQMCTMTGYPALIHRIIPEIRDYLV 336
           Q+LT++ V  V+DL EAYHALSLR TCVLFIL+ H+QMC MTGYPAL+HRI  EIR+YL 
Sbjct: 628 QNLTLETVMNVFDLAEAYHALSLRDTCVLFILKHHEQMCGMTGYPALLHRISSEIREYLR 687

Query: 335 RILRPQP 315
           RILRPQP
Sbjct: 688 RILRPQP 694


>tr|Q688N3|Q688N3_ORYSJ Os05g0398100 protein OS=Oryza sativa subsp.
           japonica GN=P0605G01.6 PE=4 SV=1
          Length = 752

 Score = 87.4 bits (215), Expect = 4e-16
 Identities = 38/65 (58%), Positives = 53/65 (81%)
 Frame = -2

Query: 515 QDLTVDNVAIVYDLTEAYHALSLRHTCVLFILEQHKQMCTMTGYPALIHRIIPEIRDYLV 336
           QD+ VDNV+ +YDL+EA+HA+SLRHTCVLFILEQ +++C  +G   LI R+IPE+R++  
Sbjct: 681 QDVNVDNVSDMYDLSEAFHAMSLRHTCVLFILEQFEKICVKSGSSQLIQRVIPELRNFFA 740

Query: 335 RILRP 321
           + LRP
Sbjct: 741 KALRP 745


>tr|B8AY14|B8AY14_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_19876 PE=4 SV=1
          Length = 677

 Score = 87.4 bits (215), Expect = 4e-16
 Identities = 38/65 (58%), Positives = 53/65 (81%)
 Frame = -2

Query: 515 QDLTVDNVAIVYDLTEAYHALSLRHTCVLFILEQHKQMCTMTGYPALIHRIIPEIRDYLV 336
           QD+ VDNV+ +YDL+EA+HA+SLRHTCVLFILEQ +++C  +G   LI R+IPE+R++  
Sbjct: 606 QDVNVDNVSDMYDLSEAFHAMSLRHTCVLFILEQFEKICVKSGSSQLIQRVIPELRNFFA 665

Query: 335 RILRP 321
           + LRP
Sbjct: 666 KALRP 670


>tr|A3B3T4|A3B3T4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_017706 PE=4 SV=1
          Length = 599

 Score = 87.4 bits (215), Expect = 4e-16
 Identities = 38/65 (58%), Positives = 53/65 (81%)
 Frame = -2

Query: 515 QDLTVDNVAIVYDLTEAYHALSLRHTCVLFILEQHKQMCTMTGYPALIHRIIPEIRDYLV 336
           QD+ VDNV+ +YDL+EA+HA+SLRHTCVLFILEQ +++C  +G   LI R+IPE+R++  
Sbjct: 528 QDVNVDNVSDMYDLSEAFHAMSLRHTCVLFILEQFEKICVKSGSSQLIQRVIPELRNFFA 587

Query: 335 RILRP 321
           + LRP
Sbjct: 588 KALRP 592


>tr|A7NWJ3|A7NWJ3_VITVI Chromosome chr5 scaffold_2, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00019943001
           PE=4 SV=1
          Length = 149

 Score = 79.7 bits (195), Expect = 8e-14
 Identities = 36/68 (52%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
 Frame = -2

Query: 515 QDLTVDNVAIVYDLTEAYHALSLRHTCVLFILEQHKQMCTMTGYPALIHRIIPEIRDYLV 336
           QD++++NV+ +Y+L+EA+HA+SLRHTC+LFILEQ  ++ +  G+  LI RIIPEIR Y  
Sbjct: 77  QDISLENVSSMYELSEAFHAISLRHTCILFILEQFSKLSSRPGHSHLIQRIIPEIRTYFA 136

Query: 335 RIL-RPQP 315
           + L +P P
Sbjct: 137 KALTKPNP 144


>tr|B8A3I0|B8A3I0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 178

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 33/63 (52%), Positives = 50/63 (79%)
 Frame = -2

Query: 515 QDLTVDNVAIVYDLTEAYHALSLRHTCVLFILEQHKQMCTMTGYPALIHRIIPEIRDYLV 336
           +D+ +DNV+ +YDL+EA+HA+SLRHTC+L+ILE   ++CT  G   LI R+IPE+R++L 
Sbjct: 100 KDVNLDNVSDMYDLSEAFHAVSLRHTCILYILEHFNKICTRAGSAQLIQRVIPELRNFLT 159

Query: 335 RIL 327
           + L
Sbjct: 160 KAL 162


>tr|A7PU99|A7PU99_VITVI Chromosome chr7 scaffold_31, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023713001
           PE=4 SV=1
          Length = 704

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 32/74 (43%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
 Frame = -2

Query: 515 QDLTVDNVAIVYDLTEAYHALSLRHTCVLFILEQHKQMCTMTGYPALIHRIIPEIRDYLV 336
           QD++V+NV+++Y+L+EA++A++LRHTC+L+ILE  +++     Y  LI  I+PEIR +  
Sbjct: 630 QDISVENVSLMYELSEAFNAMTLRHTCILYILEHFEKLTVKPWYSRLIQCILPEIRKFFR 689

Query: 335 RIL-RPQPCIRTLS 297
             L +P   + TLS
Sbjct: 690 EALTKPVEPVLTLS 703


>tr|Q56ZQ9|Q56ZQ9_ARATH Putative uncharacterized protein At5g19330
           OS=Arabidopsis thaliana GN=At5g19330 PE=4 SV=1
          Length = 115

 Score = 66.2 bits (160), Expect = 9e-10
 Identities = 28/63 (44%), Positives = 45/63 (71%)
 Frame = -2

Query: 515 QDLTVDNVAIVYDLTEAYHALSLRHTCVLFILEQHKQMCTMTGYPALIHRIIPEIRDYLV 336
           QD+T++++  +Y+L+EA+HA+SLR  C++FILE   ++ +M     L+ R IPEIR+Y  
Sbjct: 41  QDITLESIGDMYELSEAFHAMSLRQACIMFILEHFDKLSSMPWQNELVQRTIPEIREYFC 100

Query: 335 RIL 327
           R L
Sbjct: 101 RAL 103


>tr|A5ASC1|A5ASC1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_012185 PE=4 SV=1
          Length = 726

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 23/43 (53%), Positives = 37/43 (86%)
 Frame = -2

Query: 515 QDLTVDNVAIVYDLTEAYHALSLRHTCVLFILEQHKQMCTMTG 387
           QD++++NV+ +Y+L+EA+HA+SLRHTC+LFILEQ  ++ +  G
Sbjct: 621 QDISLENVSSMYELSEAFHAISLRHTCILFILEQFSKLSSRPG 663