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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919459
Clone id YMU001_000125_C12
Library
Length 508
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000125_C12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGCACAGGCAAAAAAGATGACCATCCAATGCCACTTTTGAAATGCGTCAATTGTTTCTTT
GCCTTGAAATAGTTTTCTCAAGGTATCACTAATCTTATCGAGAACACTTGGGAGGAAAAG
GCTTTAGCTGCCTATGTGCATACAGGCGGGTGAGGTGGCGGCCATCATTACACTTTTGCA
CCCTACTGTAAATCTTATGTTTGCACTGTGCTGCTCACAGTCAGCTGATTGCCAATAGTT
CTGGGGTCTGCTGATGTACGTTTAGCAACATGTTTTCCTTTCGTTGTGTGGCCCACCAGC
GGCGGGCATTCCTCGTCTTCCACTACTGTAATCAGAAAGACACAGCGTGTGCCTTTGTGC
ATTGATTGGTTTGGATCCCCAAATCATTATTGTGCTGGACTCTGGGTGTACATATCCAGC
AGCCAATTGAATTGATAGCCCTTACAGCTTGACATCAGAGAAGCTTACTCGCAGTTGTAT
AGATCCTGACTGCACCACTACCATTCTT
■■Homology search results ■■ -
sp_hit_id Q664W4
Definition sp|Q664W4|ACEK_YERPS Isocitrate dehydrogenase kinase/phosphatase OS=Yersinia pseudotuberculosis
Align length 57
Score (bit) 32.0
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919459|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_C12.
         (508 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q664W4|ACEK_YERPS Isocitrate dehydrogenase kinase/phosphatase...    32   1.7  
sp|A4TH34|ACEK_YERPP Isocitrate dehydrogenase kinase/phosphatase...    32   1.7  
sp|Q1CNT1|ACEK_YERPN Isocitrate dehydrogenase kinase/phosphatase...    32   1.7  
sp|Q8ZAR7|ACEK_YERPE Isocitrate dehydrogenase kinase/phosphatase...    32   1.7  
sp|Q1CC34|ACEK_YERPA Isocitrate dehydrogenase kinase/phosphatase...    32   1.7  
sp|A7FDG2|ACEK_YERP3 Isocitrate dehydrogenase kinase/phosphatase...    32   1.7  
sp|Q922H1|ANM3_MOUSE Protein arginine N-methyltransferase 3 OS=M...    30   4.9  
sp|O70467|ANM3_RAT Protein arginine N-methyltransferase 3 OS=Rat...    30   6.5  
sp|Q16AV0|SYK_ROSDO Lysyl-tRNA synthetase OS=Roseobacter denitri...    30   6.6  
sp|Q6AI14|SL9A4_HUMAN Sodium/hydrogen exchanger 4 OS=Homo sapien...    30   6.6  
sp|P26434|SL9A4_RAT Sodium/hydrogen exchanger 4 OS=Rattus norveg...    30   8.6  
sp|P48763|SL9A2_RAT Sodium/hydrogen exchanger 2 OS=Rattus norveg...    30   8.6  
sp|P50482|SL9A2_RABIT Sodium/hydrogen exchanger 2 OS=Oryctolagus...    30   8.6  
sp|Q9UBY0|SL9A2_HUMAN Sodium/hydrogen exchanger 2 OS=Homo sapien...    30   8.6  

>sp|Q664W4|ACEK_YERPS Isocitrate dehydrogenase kinase/phosphatase
           OS=Yersinia pseudotuberculosis GN=aceK PE=3 SV=1
          Length = 575

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = -1

Query: 289 TQRKENMLLNVHQQTPELLAIS*L*AAQCKHKIYSRVQKCNDGRHLTRLYAHRQLKP 119
           TQ  EN +++ H+ +PELL       A+ +H++  +++   D   +  LY  R++ P
Sbjct: 372 TQEYENFVIDKHRISPELL-------AELQHEVPEKLEDLGDKIVIKHLYMERRMTP 421


>sp|A4TH34|ACEK_YERPP Isocitrate dehydrogenase kinase/phosphatase
           OS=Yersinia pestis (strain Pestoides F) GN=aceK PE=3
           SV=1
          Length = 575

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = -1

Query: 289 TQRKENMLLNVHQQTPELLAIS*L*AAQCKHKIYSRVQKCNDGRHLTRLYAHRQLKP 119
           TQ  EN +++ H+ +PELL       A+ +H++  +++   D   +  LY  R++ P
Sbjct: 372 TQEYENFVIDKHRISPELL-------AELQHEVPEKLEDLGDKIVIKHLYMERRMTP 421


>sp|Q1CNT1|ACEK_YERPN Isocitrate dehydrogenase kinase/phosphatase
           OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=aceK
           PE=3 SV=1
          Length = 575

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = -1

Query: 289 TQRKENMLLNVHQQTPELLAIS*L*AAQCKHKIYSRVQKCNDGRHLTRLYAHRQLKP 119
           TQ  EN +++ H+ +PELL       A+ +H++  +++   D   +  LY  R++ P
Sbjct: 372 TQEYENFVIDKHRISPELL-------AELQHEVPEKLEDLGDKIVIKHLYMERRMTP 421


>sp|Q8ZAR7|ACEK_YERPE Isocitrate dehydrogenase kinase/phosphatase
           OS=Yersinia pestis GN=aceK PE=3 SV=1
          Length = 575

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = -1

Query: 289 TQRKENMLLNVHQQTPELLAIS*L*AAQCKHKIYSRVQKCNDGRHLTRLYAHRQLKP 119
           TQ  EN +++ H+ +PELL       A+ +H++  +++   D   +  LY  R++ P
Sbjct: 372 TQEYENFVIDKHRISPELL-------AELQHEVPEKLEDLGDKIVIKHLYMERRMTP 421


>sp|Q1CC34|ACEK_YERPA Isocitrate dehydrogenase kinase/phosphatase
           OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=aceK
           PE=3 SV=1
          Length = 575

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = -1

Query: 289 TQRKENMLLNVHQQTPELLAIS*L*AAQCKHKIYSRVQKCNDGRHLTRLYAHRQLKP 119
           TQ  EN +++ H+ +PELL       A+ +H++  +++   D   +  LY  R++ P
Sbjct: 372 TQEYENFVIDKHRISPELL-------AELQHEVPEKLEDLGDKIVIKHLYMERRMTP 421


>sp|A7FDG2|ACEK_YERP3 Isocitrate dehydrogenase kinase/phosphatase
           OS=Yersinia pseudotuberculosis serotype O:1b (strain IP
           31758) GN=aceK PE=3 SV=1
          Length = 575

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = -1

Query: 289 TQRKENMLLNVHQQTPELLAIS*L*AAQCKHKIYSRVQKCNDGRHLTRLYAHRQLKP 119
           TQ  EN +++ H+ +PELL       A+ +H++  +++   D   +  LY  R++ P
Sbjct: 372 TQEYENFVIDKHRISPELL-------AELQHEVPEKLEDLGDKIVIKHLYMERRMTP 421


>sp|Q922H1|ANM3_MOUSE Protein arginine N-methyltransferase 3 OS=Mus
           musculus GN=Prmt3 PE=1 SV=2
          Length = 532

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -3

Query: 374 PNQSMHKGTRCVFLITVVEDEECPPLVGHTTKGKHVAKRTSADPRTIGNQLTVSSTVQT* 195
           P  +     + VFL+    ++  P   G   KGK    +   DPR++   LT++S+ QT 
Sbjct: 474 PQSTKTHWKQTVFLL----EKPFPVKAGEALKGKITVHKNKKDPRSLIVTLTLNSSTQTY 529

Query: 194 DLQ 186
            LQ
Sbjct: 530 SLQ 532


>sp|O70467|ANM3_RAT Protein arginine N-methyltransferase 3 OS=Rattus
           norvegicus GN=Prmt3 PE=1 SV=1
          Length = 528

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = -3

Query: 374 PNQSMHKGTRCVFLITVVEDEECPPLVGHTTKGKHVAKRTSADPRTIGNQLTVSSTVQT* 195
           P  +     + +FL+    ++  P   G   KGK    +   DPR++   LT++S+ QT 
Sbjct: 470 PQSTKTHWKQTIFLL----EKPFPVKAGEALKGKITVHKNKKDPRSLIVTLTLNSSTQTY 525

Query: 194 DLQ 186
            LQ
Sbjct: 526 SLQ 528


>sp|Q16AV0|SYK_ROSDO Lysyl-tRNA synthetase OS=Roseobacter
           denitrificans (strain ATCC 33942 / OCh 114) GN=lysS PE=3
           SV=1
          Length = 527

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 411 VHPESSTIMIWGSKPINAQRHTLCLSDYSSGRRGMPAAGG 292
           +HPES  +M    K +NAQ  T+           +P  GG
Sbjct: 189 IHPESGRVMYVPMKEVNAQAGTITFDSEDGEEMTLPVTGG 228


>sp|Q6AI14|SL9A4_HUMAN Sodium/hydrogen exchanger 4 OS=Homo sapiens
           GN=SLC9A4 PE=1 SV=1
          Length = 798

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 117 FLPSVLDKISDTLRKLFQGKETIDAFQKWHWMVIFFACA 1
           +   +L  +S+TL  +F G  T+    +W+W  I F  A
Sbjct: 353 YFMKMLSSVSETLIFIFMGVSTVGKNHEWNWAFICFTLA 391
tr_hit_id A0DUL1
Definition tr|A0DUL1|A0DUL1_PARTE Chromosome undetermined scaffold_64, whole genome shotgun sequence OS=Paramecium tetraurelia
Align length 90
Score (bit) 37.0
E-value 0.54
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919459|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_C12.
         (508 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0DUL1|A0DUL1_PARTE Chromosome undetermined scaffold_64, whol...    37   0.54 

>tr|A0DUL1|A0DUL1_PARTE Chromosome undetermined scaffold_64, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00020400001 PE=4 SV=1
          Length = 634

 Score = 37.0 bits (84), Expect = 0.54
 Identities = 24/90 (26%), Positives = 37/90 (41%)
 Frame = -3

Query: 494 CSQDLYNCE*ASLMSSCKGYQFNWLLDMYTQSPAQ**FGDPNQSMHKGTRCVFLITVVED 315
           C Q   N + A   +  K   +N L+DMYT +P                  V++  +V+D
Sbjct: 542 CGQIAQNQKPAFFSNLTKQVHYNQLIDMYTLAP------------------VYIYPIVQD 583

Query: 314 EECPPLVGHTTKGKHVAKRTSADPRTIGNQ 225
            EC  ++  T   K + +    DP T  NQ
Sbjct: 584 NECKAVIELTLTNKQIDRHRFRDPLTSLNQ 613