BP919462 |
Clone id |
YMU001_000125_D03 |
Library |
YMU01 |
Length |
535 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000125_D03. |
Accession |
BP919462 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
GCAGAGTGCGGCTCGAGAGGGCGAAGGTGCACGGATAGTTCAGAGATGGCGAGGCGGTAG TGCAATCTCTTGTTCTCCTACACAGGCTGCTGTATCTCCTAAGTCATCTGCGGCGGAGAC CAGGAGTTTGAAGGTGAAGTCAAATCAGAGGACGTGATTATAATCAACTCCTAAATTGCT AGCTTTTGAGAATGTTGTTTTTTTCATATTTCAAAGAGCTGGTTGGCAAAGAGGTTACTG TAGAGCTAAAGAATGACCTTGCTATTCGAGGAACTCTGCATTCAGTTGACCAGTATTTAA ATATCAAGCTTGAGAATACAAGAGTGGTTGACCAAGTCAAGTATCCACACATGCTTTCAG TGAAGAATTGCTTCATCAGAGGATCAGTTGTTCGATATGTGCAGCTTCCGCCCGACGGTG TGGACGTCGAAGTTCTGCACGATGCAACGCGTCGAGAGGCACGTGGAGGTTGAGAGCTTC GACATTCTCATCCATTCCACTTACTTTCTTATAGTACGTGAACGAGGGGTTGATT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O35900 |
Definition |
sp|O35900|LSM2_MOUSE U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus |
Align length |
90 |
Score (bit) |
139.0 |
E-value |
1.0e-32 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NLP3 |
Definition |
tr|A9NLP3|A9NLP3_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
93 |
Score (bit) |
180.0 |
E-value |
5.0e-44 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919462|Adiantum capillus-veneris mRNA, clone: YMU001_000125_D03. (535 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NLP3|A9NLP3_PICSI Putative uncharacterized protein OS=Picea... 180 5e-44 tr|A9PD52|A9PD52_POPTR Putative uncharacterized protein OS=Popul... 179 6e-44 tr|A9PBV8|A9PBV8_POPTR Putative uncharacterized protein OS=Popul... 177 2e-43 tr|A7PU56|A7PU56_VITVI Chromosome chr7 scaffold_31, whole genome... 177 2e-43 tr|B6UI47|B6UI47_MAIZE SnRNP core Sm protein Sm-X5-like protein ... 177 3e-43 tr|B7F9X3|B7F9X3_ORYSJ cDNA, clone: J100009E11, full insert sequ... 177 4e-43 tr|B6UER1|B6UER1_MAIZE SnRNP core Sm protein Sm-X5-like protein ... 177 4e-43 tr|A9TVK1|A9TVK1_PHYPA Predicted protein OS=Physcomitrella paten... 176 5e-43 tr|Q7F193|Q7F193_ORYSJ Putative snRNP core protein SMX5d OS=Oryz... 175 1e-42 tr|B8BAV8|B8BAV8_ORYSI Putative uncharacterized protein OS=Oryza... 175 1e-42 tr|Q1H595|Q1H595_ARATH At1g03330 OS=Arabidopsis thaliana PE=4 SV=1 174 2e-42 tr|Q9ZVT4|Q9ZVT4_ARATH F15K9.7 protein OS=Arabidopsis thaliana G... 173 6e-42 tr|Q8L5U6|Q8L5U6_ARATH SnRNP core Sm protein Sm-X5-like protein ... 172 1e-41 tr|A8IIA2|A8IIA2_CHLRE Sm-D1 protein OS=Chlamydomonas reinhardti... 158 2e-37 tr|A4RQT9|A4RQT9_OSTLU Predicted protein OS=Ostreococcus lucimar... 153 6e-36 tr|B4J336|B4J336_DROGR GH15400 OS=Drosophila grimshawi GN=GH1540... 140 4e-32 tr|B4L066|B4L066_DROMO GI13004 OS=Drosophila mojavensis GN=GI130... 139 7e-32 tr|Q9VTW6|Q9VTW6_DROME CG10418 OS=Drosophila melanogaster GN=CG1... 139 9e-32 tr|B7QF41|B7QF41_IXOSC Putative uncharacterized protein OS=Ixode... 139 9e-32 tr|B4QR91|B4QR91_DROSI GD14374 OS=Drosophila simulans GN=GD14374... 139 9e-32 tr|B4PGC1|B4PGC1_DROYA GE21899 OS=Drosophila yakuba GN=GE21899 P... 139 9e-32 tr|B4LFF8|B4LFF8_DROVI GJ13149 OS=Drosophila virilis GN=GJ13149 ... 139 9e-32 tr|B4HFL6|B4HFL6_DROSE GM25341 OS=Drosophila sechellia GN=GM2534... 139 9e-32 tr|Q5RKP8|Q5RKP8_DANRE Smx5 OS=Danio rerio GN=smx5 PE=2 SV=1 139 1e-31 tr|Q5BL46|Q5BL46_XENTR LSM2 homolog, U6 small nuclear RNA associ... 139 1e-31 tr|Q52KE0|Q52KE0_XENLA Lsm2 protein OS=Xenopus laevis GN=lsm2 PE... 139 1e-31 tr|Q3U9X2|Q3U9X2_MOUSE Putative uncharacterized protein OS=Mus m... 139 1e-31 tr|A6QQV3|A6QQV3_BOVIN LSM2 protein OS=Bos taurus GN=LSM2 PE=4 SV=1 139 1e-31 tr|A5A8V8|A5A8V8_PIG LSM2 homolog, U6 small nuclear RNA associat... 139 1e-31 tr|Q6FGG1|Q6FGG1_HUMAN LSM2 homolog, U6 small nuclear RNA associ... 139 1e-31
>tr|A9NLP3|A9NLP3_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 93
Score = 180 bits (456), Expect = 5e-44 Identities = 88/93 (94%), Positives = 91/93 (97%) Frame = +3
Query: 192 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQVKYPHMLSVKNC 371 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV+Q KYPHMLSVKNC Sbjct: 1 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVEQDKYPHMLSVKNC 60
Query: 372 FIRGSVVRYVQLPPDGVDVEVLHDATRREARGG 470 FIRGSVVRYV LPPDGVDV++LHDATRREARGG Sbjct: 61 FIRGSVVRYVLLPPDGVDVDILHDATRREARGG 93
>tr|A9PD52|A9PD52_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1 Length = 93
Score = 179 bits (455), Expect = 6e-44 Identities = 87/93 (93%), Positives = 92/93 (98%) Frame = +3
Query: 192 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQVKYPHMLSVKNC 371 MLFFSYFK+LVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ KYPHMLSV+NC Sbjct: 1 MLFFSYFKDLVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
Query: 372 FIRGSVVRYVQLPPDGVDVEVLHDATRREARGG 470 FIRGSVVRYVQLPP+GVDV++LHDATRREARGG Sbjct: 61 FIRGSVVRYVQLPPEGVDVDLLHDATRREARGG 93
>tr|A9PBV8|A9PBV8_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1 Length = 93
Score = 177 bits (450), Expect = 2e-43 Identities = 86/93 (92%), Positives = 91/93 (97%) Frame = +3
Query: 192 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQVKYPHMLSVKNC 371 MLFFSYFK+LVGKEVTVELKNDLAIRG LHSVDQYLNIKLENTRVVDQ KYPHMLSV+NC Sbjct: 1 MLFFSYFKDLVGKEVTVELKNDLAIRGNLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
Query: 372 FIRGSVVRYVQLPPDGVDVEVLHDATRREARGG 470 FIRGSVVRYVQLPP+GVDV++LHDATRREARGG Sbjct: 61 FIRGSVVRYVQLPPEGVDVDLLHDATRREARGG 93
>tr|A7PU56|A7PU56_VITVI Chromosome chr7 scaffold_31, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00023663001 PE=4 SV=1 Length = 97
Score = 177 bits (450), Expect = 2e-43 Identities = 86/95 (90%), Positives = 92/95 (96%) Frame = +3
Query: 186 LRMLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQVKYPHMLSVK 365 L LFFSYFK+LVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ KYPHMLSV+ Sbjct: 3 LVQLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVR 62
Query: 366 NCFIRGSVVRYVQLPPDGVDVEVLHDATRREARGG 470 NCFIRGSVVRYVQLPP+GVD+E+LHDATRREARGG Sbjct: 63 NCFIRGSVVRYVQLPPEGVDIELLHDATRREARGG 97
>tr|B6UI47|B6UI47_MAIZE SnRNP core Sm protein Sm-X5-like protein OS=Zea mays PE=4 SV=1 Length = 93
Score = 177 bits (449), Expect = 3e-43 Identities = 87/93 (93%), Positives = 90/93 (96%) Frame = +3
Query: 192 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQVKYPHMLSVKNC 371 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ KYPHMLSV+NC Sbjct: 1 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
Query: 372 FIRGSVVRYVQLPPDGVDVEVLHDATRREARGG 470 FIRGSVVRYV LP DGVDV++LHDATRREARGG Sbjct: 61 FIRGSVVRYVLLPQDGVDVDILHDATRREARGG 93
>tr|B7F9X3|B7F9X3_ORYSJ cDNA, clone: J100009E11, full insert sequence OS=Oryza sativa subsp. japonica PE=4 SV=1 Length = 93
Score = 177 bits (448), Expect = 4e-43 Identities = 86/93 (92%), Positives = 90/93 (96%) Frame = +3
Query: 192 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQVKYPHMLSVKNC 371 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ KYPHMLSV+NC Sbjct: 1 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
Query: 372 FIRGSVVRYVQLPPDGVDVEVLHDATRREARGG 470 FIRGSVVRYV LP DGVD+++LHDATRREARGG Sbjct: 61 FIRGSVVRYVLLPQDGVDIDILHDATRREARGG 93
>tr|B6UER1|B6UER1_MAIZE SnRNP core Sm protein Sm-X5-like protein OS=Zea mays PE=4 SV=1 Length = 93
Score = 177 bits (448), Expect = 4e-43 Identities = 86/93 (92%), Positives = 90/93 (96%) Frame = +3
Query: 192 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQVKYPHMLSVKNC 371 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ KYPHMLSV+NC Sbjct: 1 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
Query: 372 FIRGSVVRYVQLPPDGVDVEVLHDATRREARGG 470 FIRGSVVRYV LP DGVD+++LHDATRREARGG Sbjct: 61 FIRGSVVRYVLLPQDGVDIDILHDATRREARGG 93
>tr|A9TVK1|A9TVK1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_198696 PE=4 SV=1 Length = 93
Score = 176 bits (447), Expect = 5e-43 Identities = 86/93 (92%), Positives = 88/93 (94%) Frame = +3
Query: 192 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQVKYPHMLSVKNC 371 MLFFSYFKELVGKEV VELKNDLAI G LHSVDQYLNIKLENTRVVD KYPHMLSVKNC Sbjct: 1 MLFFSYFKELVGKEVIVELKNDLAISGILHSVDQYLNIKLENTRVVDDTKYPHMLSVKNC 60
Query: 372 FIRGSVVRYVQLPPDGVDVEVLHDATRREARGG 470 FIRGSVVRYVQLPPDGVDV++LHDATRREARGG Sbjct: 61 FIRGSVVRYVQLPPDGVDVDILHDATRREARGG 93
>tr|Q7F193|Q7F193_ORYSJ Putative snRNP core protein SMX5d OS=Oryza sativa subsp. japonica GN=OJ1066_B03.126 PE=4 SV=1 Length = 288
Score = 175 bits (443), Expect = 1e-42 Identities = 85/92 (92%), Positives = 89/92 (96%) Frame = +3
Query: 195 LFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQVKYPHMLSVKNCF 374 LFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ KYPHMLSV+NCF Sbjct: 197 LFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 256
Query: 375 IRGSVVRYVQLPPDGVDVEVLHDATRREARGG 470 IRGSVVRYV LP DGVD+++LHDATRREARGG Sbjct: 257 IRGSVVRYVLLPQDGVDIDILHDATRREARGG 288
>tr|B8BAV8|B8BAV8_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_27848 PE=4 SV=1 Length = 120
Score = 175 bits (443), Expect = 1e-42 Identities = 85/92 (92%), Positives = 89/92 (96%) Frame = +3
Query: 195 LFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQVKYPHMLSVKNCF 374 LFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ KYPHMLSV+NCF Sbjct: 29 LFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 88
Query: 375 IRGSVVRYVQLPPDGVDVEVLHDATRREARGG 470 IRGSVVRYV LP DGVD+++LHDATRREARGG Sbjct: 89 IRGSVVRYVLLPQDGVDIDILHDATRREARGG 120
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