NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919465
Clone id YMU001_000125_D06
Library
Length 529
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000125_D06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGCCCGGGCCGTAACAGGATGAACCAATATAAATGAGTGTAAGCTTCGTAGCCTAAACAC
GATCAGTGCTAACCACGCATACCGAAGGCCTGTTATTATAGTAGCAAGAGAAGTCAAAGC
GGTGACGATTGAAAGGTTGTCACTGCAGCAGCGTTCCCAGTCGTACGAGAAGAGGGGTTA
ATTGGCGAGGCCATACGCTCGTGGAGCTTCTCGCGAAGTATAGCTCACATCCAAACATCT
GATTGAGGAACGGGGCAATGCCCATGGAGCTCCGGAAACGGAAGGCCTGCCAAGCCATAT
GCCCGTGAGTGCAGCGGGATTCTTCAAAAAGAATAGGCTGACTTGAGGACTTAGGACCTT
AGCCACGAATAGCCAGAGATGCGTGCAGACAAAACAGAAATTATAGCGTCCAACCCAAGG
CCTCGACCAAATGTTCAGGCCCTCCAATCGAGCAGGGATTGCAAGCAAAGTGGAGGATTT
AAGTTCTTAAGAAGAGCCGTGTGAGGCCTATAGCTCATGCACAGTTCAG
■■Homology search results ■■ -
sp_hit_id P34037
Definition sp|P34037|HIS8_ZYMMO Histidinol-phosphate aminotransferase OS=Zymomonas mobilis
Align length 47
Score (bit) 33.9
E-value 0.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919465|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_D06.
         (529 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P34037|HIS8_ZYMMO Histidinol-phosphate aminotransferase OS=Zy...    34   0.50 
sp|Q9A671|HIS81_CAUCR Histidinol-phosphate aminotransferase 1 OS...    34   0.50 
sp|A7HCR6|HIS8_ANADF Histidinol-phosphate aminotransferase OS=An...    32   1.4  
sp|Q3JEN8|HIS81_NITOC Histidinol-phosphate aminotransferase 1 OS...    31   3.2  
sp|A7H5D0|ACPS_CAMJD Holo-[acyl-carrier-protein] synthase OS=Cam...    31   4.2  
sp|Q5HT08|ACPS_CAMJR Holo-[acyl-carrier-protein] synthase OS=Cam...    30   5.5  
sp|A1W123|ACPS_CAMJJ Holo-[acyl-carrier-protein] synthase OS=Cam...    30   5.5  
sp|A8FN84|ACPS_CAMJ8 Holo-[acyl-carrier-protein] synthase OS=Cam...    30   5.5  
sp|O14426|CDC42_CANAL Cell division control protein 42 homolog O...    30   7.1  

>sp|P34037|HIS8_ZYMMO Histidinol-phosphate aminotransferase
           OS=Zymomonas mobilis GN=hisC PE=3 SV=3
          Length = 369

 Score = 33.9 bits (76), Expect = 0.50
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -2

Query: 360 KVLSPQVSLFFLKNPAALTGIWLGRPSVSGAPWALPRSSIRCLDVSY 220
           K ++P+  + F+ NP   TG W+ R  V      LPR+ +  +D +Y
Sbjct: 147 KAVTPRTRVVFIANPNNPTGTWITRAEVEKLHNGLPRNCLLVIDQAY 193


>sp|Q9A671|HIS81_CAUCR Histidinol-phosphate aminotransferase 1
           OS=Caulobacter crescentus GN=hisC1 PE=3 SV=1
          Length = 359

 Score = 33.9 bits (76), Expect = 0.50
 Identities = 28/98 (28%), Positives = 37/98 (37%)
 Frame = -2

Query: 366 VAKVLSPQVSLFFLKNPAALTGIWLGRPSVSGAPWALPRSSIRCLDVSYTSREAPRAYGL 187
           V K +  +  L F+ NPA  TG WL    +     ALP S +  LD +Y           
Sbjct: 138 VIKCVDERTRLVFIANPANPTGTWLTGEEIRALHAALPPSVVLVLDGAYAE--------F 189

Query: 186 AN*PLFSYDWERCCSDNLSIVTALTSLATIITGLRYAW 73
            + P F    E   +    IVT   S    +  LR  W
Sbjct: 190 CSDPHFEDGLELARTAENVIVTRTFSKIHGLAALRVGW 227


>sp|A7HCR6|HIS8_ANADF Histidinol-phosphate aminotransferase
           OS=Anaeromyxobacter sp. (strain Fw109-5) GN=hisC PE=3
           SV=1
          Length = 364

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 21/80 (26%), Positives = 36/80 (45%)
 Frame = -2

Query: 459 IPARLEGLNIWSRPWVGRYNFCFVCTHLWLFVAKVLSPQVSLFFLKNPAALTGIWLGRPS 280
           + A   G  +   P  GR+++          + K+LS +  L FL NP   TG W     
Sbjct: 121 LAAHEHGRTLVEAPMKGRFHYDLDA------LRKLLSRRTKLVFLANPDNPTGTWFTEAE 174

Query: 279 VSGAPWALPRSSIRCLDVSY 220
           ++    A+P+ ++  LD +Y
Sbjct: 175 LTPFLDAVPKDTLVVLDEAY 194


>sp|Q3JEN8|HIS81_NITOC Histidinol-phosphate aminotransferase 1
           OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB
           11848) GN=hisC1 PE=3 SV=1
          Length = 370

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = -2

Query: 366 VAKVLSPQVSLFFLKNPAALTGIWLGRPSVSGAPWALPRSSIRCLDVSYTS--REAPRAY 193
           + K ++ Q  L ++ NP   TG WL    +     ALP   +  LD +Y     EA   Y
Sbjct: 151 MVKAVNSQTRLVYIANPNNPTGTWLHSDELEAFLAALPEHVLVVLDEAYYEYVNEAQYPY 210

Query: 192 GLA 184
            LA
Sbjct: 211 SLA 213


>sp|A7H5D0|ACPS_CAMJD Holo-[acyl-carrier-protein] synthase
           OS=Campylobacter jejuni subsp. doylei (strain ATCC
           BAA-1458 / RM4099 / 269.97) GN=acpS PE=3 SV=1
          Length = 115

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -2

Query: 369 FVAKVLSPQVSLFFLKNPAALTGIWLGRPSVSGA--PWALPRSSIRCLDVSYTSREAPR 199
           F+ K LSP+  +  +KNPA L G+W  + + S A         S   +++S   R AP+
Sbjct: 24  FLDKFLSPKEQIL-IKNPATLAGLWAAKEAASKALGVGICELCSFFDIEISKDERNAPK 81


>sp|Q5HT08|ACPS_CAMJR Holo-[acyl-carrier-protein] synthase
           OS=Campylobacter jejuni (strain RM1221) GN=acpS PE=3
           SV=1
          Length = 115

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 369 FVAKVLSPQVSLFFLKNPAALTGIWLGRPSVSGA 268
           F+ K LSP+  +  +KNPA L G+W  + + S A
Sbjct: 24  FLDKFLSPKEQIL-IKNPATLAGLWAAKEAASKA 56


>sp|A1W123|ACPS_CAMJJ Holo-[acyl-carrier-protein] synthase
           OS=Campylobacter jejuni subsp. jejuni serotype O:23/36
           (strain 81-176) GN=acpS PE=3 SV=1
          Length = 115

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 369 FVAKVLSPQVSLFFLKNPAALTGIWLGRPSVSGA 268
           F+ K LSP+  +  +KNPA L G+W  + + S A
Sbjct: 24  FLDKFLSPKEQIL-IKNPATLAGLWAAKEAASKA 56


>sp|A8FN84|ACPS_CAMJ8 Holo-[acyl-carrier-protein] synthase
           OS=Campylobacter jejuni subsp. jejuni serotype O:6
           (strain 81116 / NCTC 11828) GN=acpS PE=3 SV=1
          Length = 115

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 369 FVAKVLSPQVSLFFLKNPAALTGIWLGRPSVSGA 268
           F+ K LSP+  +  +KNPA L G+W  + + S A
Sbjct: 24  FLDKFLSPKEQIL-IKNPATLAGLWAAKEAASKA 56


>sp|O14426|CDC42_CANAL Cell division control protein 42 homolog
           OS=Candida albicans GN=CDC42 PE=3 SV=1
          Length = 191

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
 Frame = -3

Query: 278 FPELHGHCP-VP------QSDVWM*AILREKLHERMASPI 180
           FPE+H HCP VP      Q+D+    ++ ++LH +  SPI
Sbjct: 98  FPEVHHHCPGVPIIIVGTQTDLRNDDVILQRLHRQKLSPI 137
tr_hit_id A4CJR1
Definition tr|A4CJR1|A4CJR1_9FLAO Glycine dehydrogenase OS=Robiginitalea biformata HTCC2501
Align length 56
Score (bit) 34.3
E-value 4.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919465|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_D06.
         (529 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4CJR1|A4CJR1_9FLAO Glycine dehydrogenase OS=Robiginitalea bi...    34   4.0  
tr|B0T2V4|B0T2V4_CAUSK Histidinol-phosphate aminotransferase OS=...    34   5.3  
tr|B8GYJ8|B8GYJ8_CAUCR Histidinol-phosphate aminotransferase OS=...    34   5.3  
tr|B4R842|B4R842_PHEZH Histidinol-phosphate aminotransferase OS=...    33   9.0  
tr|A9IU38|A9IU38_BORPD Membrane protein similar to PMT family gl...    33   9.0  
tr|A4QYL3|A4QYL3_MAGGR Putative uncharacterized protein OS=Magna...    33   9.0  

>tr|A4CJR1|A4CJR1_9FLAO Glycine dehydrogenase OS=Robiginitalea
           biformata HTCC2501 GN=RB2501_09705 PE=4 SV=1
          Length = 949

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 22/56 (39%), Positives = 31/56 (55%)
 Frame = -2

Query: 354 LSPQVSLFFLKNPAALTGIWLGRPSVSGAPWALPRSSIRCLDVSYTSREAPRAYGL 187
           ++PQ++ F  KNP   TG   G P++S APW    S++ CL +SY       A GL
Sbjct: 717 VAPQLAEFLPKNPLVETGGKHGIPAISAAPWG---SALVCL-ISYAYIRMLGAEGL 768


>tr|B0T2V4|B0T2V4_CAUSK Histidinol-phosphate aminotransferase
           OS=Caulobacter sp. (strain K31) GN=Caul_3228 PE=4 SV=1
          Length = 375

 Score = 33.9 bits (76), Expect = 5.3
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -2

Query: 366 VAKVLSPQVSLFFLKNPAALTGIWLGRPSVSGAPWALPRSSIRCLDVSY 220
           V K +  +  L F+ NPA  TG WL    +     ALP S +  LD +Y
Sbjct: 152 VVKCVDERTRLVFIANPANPTGTWLTGEEIRALHAALPPSVVLVLDGAY 200


>tr|B8GYJ8|B8GYJ8_CAUCR Histidinol-phosphate aminotransferase
           OS=Caulobacter crescentus NA1000 GN=CCNA_02306 PE=4 SV=1
          Length = 373

 Score = 33.9 bits (76), Expect = 5.3
 Identities = 28/98 (28%), Positives = 37/98 (37%)
 Frame = -2

Query: 366 VAKVLSPQVSLFFLKNPAALTGIWLGRPSVSGAPWALPRSSIRCLDVSYTSREAPRAYGL 187
           V K +  +  L F+ NPA  TG WL    +     ALP S +  LD +Y           
Sbjct: 152 VIKCVDERTRLVFIANPANPTGTWLTGEEIRALHAALPPSVVLVLDGAYAE--------F 203

Query: 186 AN*PLFSYDWERCCSDNLSIVTALTSLATIITGLRYAW 73
            + P F    E   +    IVT   S    +  LR  W
Sbjct: 204 CSDPHFEDGLELARTAENVIVTRTFSKIHGLAALRVGW 241


>tr|B4R842|B4R842_PHEZH Histidinol-phosphate aminotransferase
           OS=Phenylobacterium zucineum (strain HLK1) GN=hisC PE=4
           SV=1
          Length = 354

 Score = 33.1 bits (74), Expect = 9.0
 Identities = 24/98 (24%), Positives = 38/98 (38%)
 Frame = -2

Query: 366 VAKVLSPQVSLFFLKNPAALTGIWLGRPSVSGAPWALPRSSIRCLDVSYTSREAPRAYGL 187
           + K +  +  + F+ NPA  TG W+    +     ALP S +  LD +Y+          
Sbjct: 132 ILKCVDERTRIVFIANPANPTGTWVPFAEIERLHRALPASVVLVLDGAYSE--------F 183

Query: 186 AN*PLFSYDWERCCSDNLSIVTALTSLATIITGLRYAW 73
            N P F    +   +    +VT   S    +  LR  W
Sbjct: 184 CNDPAFDDGMDLARTAQNVVVTRTFSKLHGLAALRVGW 221


>tr|A9IU38|A9IU38_BORPD Membrane protein similar to PMT family
           glycosyltransferases OS=Bordetella petrii (strain ATCC
           BAA-461 / DSM 12804 / CCUG 43448) GN=Bpet3153 PE=4 SV=1
          Length = 576

 Score = 33.1 bits (74), Expect = 9.0
 Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 16/140 (11%)
 Frame = -2

Query: 414 VGRYNFCFVCTHLWLFVAKVLSPQVSLFFLKNPAALTGIWLGRPSVSGAPWALP---RSS 244
           V R+       H+WL +       V LFFL+ P     I L  P    A ++LP   R  
Sbjct: 310 VWRWRDWLYAPHIWLPLVLAAFAGVQLFFLEEPTDSEFILLAVPCSILAAFSLPTLRRGV 369

Query: 243 IRCLD----VSYTSREAPRAYGLAN*PLFSYDWERCCSDNLSIVTA---------LTSLA 103
           +  LD    + ++   A    G        + W    + N++  TA           +LA
Sbjct: 370 VNTLDWFAVMCFSLTVATAWLGWV---ALHFGWPAQIARNIARQTAGYEPVISWIAFALA 426

Query: 102 TIITGLRYAWLALIVFRLRS 43
            ++T    AW+AL+ +RLRS
Sbjct: 427 LLVTA---AWVALVAWRLRS 443


>tr|A4QYL3|A4QYL3_MAGGR Putative uncharacterized protein
           OS=Magnaporthe grisea GN=MGG_07705 PE=4 SV=1
          Length = 1799

 Score = 33.1 bits (74), Expect = 9.0
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -2

Query: 357 VLSPQVSLFFLKNPAALTGIWLGRPSVSGAPWALPR 250
           V+ P   L  L +P A+  IW+  PS+SG  WALP+
Sbjct: 725 VVEPDTGL--LASPHAIGEIWVDSPSLSGGFWALPK 758