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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919466
Clone id YMU001_000125_D07
Library
Length 435
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000125_D07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTTATTGTCGTTCGTCGGATTCTGTCCCGCCCTTTGTGTCAAAACTTCATCC
GTGAGGTAGGTCAAGTTACCCAAATGTATCCGAGAATCCCCGCTTAGCATGTCCCATCAG
TTGGTGTATTGAGCTCGGACTTTTGCTCAAGGCAGTGATCTCGGGTCTCTTTATGGAGGC
CGCAGCGAAAACCGCTCAATCTGCTCTTTGAAAGTGACCTTCTTAAACGCAGAGGTCGGT
AGAAAAGAATCCCAAAACCTTTCAGAATATGCACTCAAAGTGTCACCCTTGGTCATCCAA
AGATGATTCCAATGCGGTTCTCACGTCTCGTTCGTAATCCTGGGTCAACCAAGAAGAAAT
AAAGAGGCGTTTGAACTTTAACCACTTGGTCGGAGCTTCTCTCCTCAGAAGAAGAGTGGA
CCACCATGTTCGTGA
■■Homology search results ■■ -
sp_hit_id A7THM1
Definition sp|A7THM1|SHE9_VANPO Sensitive to high expression protein 9 homolog, mitochondrial OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294)
Align length 54
Score (bit) 29.3
E-value 6.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919466|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_D07.
         (421 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A7THM1|SHE9_VANPO Sensitive to high expression protein 9 homo...    29   6.6  
sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05...    29   8.4  
sp|Q8BFU1|S39A9_MOUSE Zinc transporter ZIP9 OS=Mus musculus GN=S...    29   8.4  

>sp|A7THM1|SHE9_VANPO Sensitive to high expression protein 9
           homolog, mitochondrial OS=Vanderwaltozyma polyspora
           (strain ATCC 22028 / DSM 70294) GN=SHE9 PE=3 SV=1
          Length = 446

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = -1

Query: 409 WSTLLLRREAPTKWLKFKRLFISSW----LTQDYERDVRTALESSLDDQG*HFE 260
           WST +L       ++   +LF+  W    L + +ER+VRT+LE+   D   H+E
Sbjct: 307 WSTFMLMAVNLFLFV-ILQLFLEPWKRRRLVRAFERNVRTSLEAQAADHQLHYE 359


>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c
           OS=Schizosaccharomyces pombe GN=SPCC548.05c PE=2 SV=1
          Length = 468

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 222 SVEKNPKTFQNMHSKCHPWSSKDDSNAVLTS 314
           S   N  +  N+HS+ HP+SS +D   ++T+
Sbjct: 390 SSSNNSPSHNNIHSRQHPFSSDEDEGNIVTN 420


>sp|Q8BFU1|S39A9_MOUSE Zinc transporter ZIP9 OS=Mus musculus
           GN=Slc39a9 PE=2 SV=1
          Length = 308

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = +3

Query: 57  SSYPNVSENPRLACPISWCIE--LGLLLKAVISGLFMEAAAKTAQSAL 194
           SS+ + S++P  A P S  I   LGL++ A   G+ + AAA T+Q+++
Sbjct: 128 SSHVHSSDDPETARPSSSKITTTLGLVVHAAADGVALGAAASTSQTSV 175
tr_hit_id B1DH18
Definition tr|B1DH18|B1DH18_9BACL Mg2 transporter protein CorA family protein OS=Paenibacillus sp. JDR-2
Align length 36
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919466|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_D07.
         (421 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1DH18|B1DH18_9BACL Mg2 transporter protein CorA family prote...    33   5.4  
tr|B8MEA2|B8MEA2_9EURO Putative uncharacterized protein OS=Talar...    33   7.0  
tr|B0DSK3|B0DSK3_LACBS Carbohydrate esterase family 4 protein (F...    33   9.2  

>tr|B1DH18|B1DH18_9BACL Mg2 transporter protein CorA family protein
           OS=Paenibacillus sp. JDR-2 GN=Pjdr2DRAFT_4419 PE=4 SV=1
          Length = 388

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 300 HWNHLWMTKGDTLSAYSERFWDSFLPTSAFKKVTFK 193
           HW+HL++   +   A  E F D+   T  FK+ T+K
Sbjct: 208 HWSHLFIPIRELYGAAQEAFMDTLTETEVFKRTTYK 243


>tr|B8MEA2|B8MEA2_9EURO Putative uncharacterized protein
           OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_016090 PE=4
           SV=1
          Length = 596

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +2

Query: 233 ESQNLSEYALKVSPLVIQR*FQCGSHVSFVILGQPRRNKEAFEL*PLGRSFSPQKKSGPP 412
           E Q    YA  V+P  + + +  G+H    + G P  + + +   P G  F P +   PP
Sbjct: 253 EPQGADSYASPVAPKEVSKPYPGGNHPEGNLEGHPEGHPDGYHSVPAGNPFQPPQPPQPP 312


>tr|B0DSK3|B0DSK3_LACBS Carbohydrate esterase family 4 protein
           (Fragment) OS=Laccaria bicolor (strain S238N-H82)
           GN=LACBIDRAFT_253895 PE=4 SV=1
          Length = 314

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 297 WNHLWMTKGDTLSAYSERFWDSFLPTSAFKKVT 199
           W+H +MT   +  A++E ++  FLP  A K VT
Sbjct: 154 WSHRYMTSFSSPDAFAELYYSQFLPMQAIKLVT 186