BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919472|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_E02.
         (511 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P48197|GYRB_CAUCR DNA gyrase subunit B OS=Caulobacter crescen...    31   3.9  
sp|Q292H2|DOP1_DROPS Protein dopey-1 homolog OS=Drosophila pseud...    31   3.9  
sp|A1ZBE8|DOP1_DROME Protein dopey-1 homolog OS=Drosophila melan...    31   3.9  
sp|A8AL53|DTD_CITK8 D-tyrosyl-tRNA(Tyr) deacylase OS=Citrobacter...    30   5.0  
sp|Q2LVL1|LPXK_SYNAS Tetraacyldisaccharide 4'-kinase OS=Syntroph...    30   6.6  

>sp|P48197|GYRB_CAUCR DNA gyrase subunit B OS=Caulobacter crescentus
           GN=gyrB PE=3 SV=2
          Length = 805

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = -3

Query: 506 TSMGTFPDDGLFTLLAFERPDDELPVTELYKQEPGRRIMSSSHEEDELAEET---SGGLE 336
           T +  FP    F  + F+R   E  + EL     G  I    H + E  EE     GG+E
Sbjct: 181 TEVTFFPSKDTFAFIEFDRKTLEHRLRELAFLNSGVTIWFKDHRDVEPWEEKLFYEGGIE 240

Query: 335 AILRH 321
           A +RH
Sbjct: 241 AFVRH 245


>sp|Q292H2|DOP1_DROPS Protein dopey-1 homolog OS=Drosophila
           pseudoobscura pseudoobscura GN=GA13490 PE=3 SV=1
          Length = 2629

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -3

Query: 374 EDELAEETSGGLEAILRHDGGLGFVQSAWELGSCVWSNMP 255
           ED+L +  + GL  ILR D  L     +W LGS V  N P
Sbjct: 267 EDDLVKLVTNGLNTILRRDMSLNRRLFSWLLGSEVAKNSP 306


>sp|A1ZBE8|DOP1_DROME Protein dopey-1 homolog OS=Drosophila
           melanogaster GN=CG15099 PE=1 SV=1
          Length = 2599

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -3

Query: 374 EDELAEETSGGLEAILRHDGGLGFVQSAWELGSCVWSNMP 255
           ED+L +  + GL  ILR D  L     +W LGS V  N P
Sbjct: 267 EDDLVKLVTNGLNTILRRDMSLNRRLFSWLLGSEVAKNSP 306


>sp|A8AL53|DTD_CITK8 D-tyrosyl-tRNA(Tyr) deacylase OS=Citrobacter
           koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
           GN=dtd PE=3 SV=1
          Length = 145

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 479 GLFTLLAFERPDDELPVTELYKQEPGRRIMSSSHEEDELAEETSGG 342
           GL  LL  ER DDE     L ++  G RI S +  +  L  + +GG
Sbjct: 26  GLLVLLGVERDDDEQKANRLCERVLGYRIFSDAEGKMNLNVQQAGG 71


>sp|Q2LVL1|LPXK_SYNAS Tetraacyldisaccharide 4'-kinase OS=Syntrophus
           aciditrophicus (strain SB) GN=lpxK PE=3 SV=1
          Length = 374

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 237 SNLEGTRHVAPNARAQLPCTLHKTEPSIVPKDSLKTPGCLLS 362
           S+L      A  ARA++  T  K E  + P + L  P C LS
Sbjct: 311 SDLAFIERTAKEARAEMIVTTEKDEIKLAPMEKLALPACFLS 352

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919472|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_E02.
         (511 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8LY60|A8LY60_SALAI DNA polymerase III, alpha subunit OS=Sali...    35   2.7  
tr|B5YP29|B5YP29_THAPS Predicted protein OS=Thalassiosira pseudo...    33   6.1  

>tr|A8LY60|A8LY60_SALAI DNA polymerase III, alpha subunit
           OS=Salinispora arenicola (strain CNS-205) GN=Sare_3466
           PE=4 SV=1
          Length = 1124

 Score = 34.7 bits (78), Expect = 2.7
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -3

Query: 461 AFERPDDELPVTELYKQEPGRRIMSSSHEEDELAEETSGGLE--AILRHDGGLGFVQSA 291
           A  RPDD +P  EL+       +  +SH E+   E T  GL   A+  HDG  G V+ A
Sbjct: 64  AVSRPDDAVPYAELHTHTNFSFLDGASHPEELAEEATRLGLTALAVTDHDGFYGVVRFA 122


>tr|B5YP29|B5YP29_THAPS Predicted protein OS=Thalassiosira pseudonana
            CCMP1335 GN=THAPS_6636 PE=4 SV=1
          Length = 1349

 Score = 33.5 bits (75), Expect = 6.1
 Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 9/87 (10%)
 Frame = -3

Query: 488  PDDGLFTLLAFERPDD---------ELPVTELYKQEPGRRIMSSSHEEDELAEETSGGLE 336
            PDD     L+    DD         +  +TELYKQ P   +++   EED      S GL 
Sbjct: 1205 PDDNFGNNLSLVVSDDRTDTQDTLIQFDITELYKQNPRSAVLTLYVEED----CDSAGLF 1260

Query: 335  AILRHDGGLGFVQSAWELGSCVWSNMP 255
               R      +  S W      WSN P
Sbjct: 1261 TTTR------YTDSGWNESDVTWSNAP 1281