BP919486
Clone id YMU001_000125_F05
Library
Length 475
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000125_F05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AGAAGCTCGAAAGCAGTTTCTTGAGGTTGGACAAGATAGGAGGCCTTTGATGCAAAGGGC
ATATGAAGTTTTCAAGAAGGGTGGTAATCCAGGTGATCTCATACATGAATTTAAAGATGG
TCAACCGTATGAGGTCTTTTATGCACATCTATATGCAGGCCTGTACCATGAATCTGAGGG
AGATTCTGAGGCTGCCAAATCGGCTATGGTAGCTGCTTGCAGAACACCTTATGGTATTCG
ATCTGGAGACTACATGGCATCACTAGCAAAGGTCCACTGCAAGTGTCGGGACTGGGACCT
ATGAGAGACTCAGGATTCGGGACATGGGCTGAGGTTCACTGACAATTGGGCAAGCTTCTC
TTGGTATATATACTTCATTCAGATTCTCACAAGCATGGCTGACAGGTATTACAATCTAGA
AAGACAAAACAACTTCAATCATCTCATTCCATGCAGCAGTTCACAGCAGAGAATG
■■Homology search results ■■ -
sp_hit_id Q3SID4
Definition sp|Q3SID4|MNMC_THIDA tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC OS=Thiobacillus denitrificans (strain ATCC 25259)
Align length 84
Score (bit) 32.7
E-value 0.77
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919486|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_F05.
(460 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q3SID4|MNMC_THIDA tRNA 5-methylaminomethyl-2-thiouridine bios... 33 0.77
sp|O31385|PCAB_BRAJA 3-carboxy-cis,cis-muconate cycloisomerase O... 32 1.7
sp|Q2NSH3|AROC_SODGM Chorismate synthase OS=Sodalis glossinidius... 32 1.7
sp|P39641|BACD_BACSU Alanine-anticapsin ligase bacD OS=Bacillus ... 31 2.9
sp|Q7N299|AROC_PHOLL Chorismate synthase OS=Photorhabdus lumines... 30 3.8
sp|Q218F9|Y1666_RHOPB UPF0317 protein RPC_1666 OS=Rhodopseudomon... 30 3.8
sp|Q4R9C4|G2E3_MACFA G2/M phase-specific E3 ubiquitin-protein li... 29 8.5

>sp|Q3SID4|MNMC_THIDA tRNA 5-methylaminomethyl-2-thiouridine
biosynthesis bifunctional protein mnmC OS=Thiobacillus
denitrificans (strain ATCC 25259) GN=mnmC PE=3 SV=2
Length = 616

Score = 32.7 bits (73), Expect = 0.77
Identities = 24/84 (28%), Positives = 32/84 (38%)
Frame = +2

Query: 92 EFKDGQPYEVFYAHLYAGLYHESEGDSEAAKSAMVAACRTPYGIRSGDYMASLAKVHCKC 271
EF+DG PY Y +YH ++G A+ +A C P D L
Sbjct: 11 EFRDGVPYSA----AYGDVYHSADGGPGQARHVFLAGCGLPAAWAGRDSFVVL------- 59

Query: 272 RDWDL*ETQDSGHGLRFTDNWASF 343
ET G GL F WA++
Sbjct: 60 ------ET-GFGTGLNFLATWAAW 76


>sp|O31385|PCAB_BRAJA 3-carboxy-cis,cis-muconate cycloisomerase
OS=Bradyrhizobium japonicum GN=pcaB PE=3 SV=1
Length = 451

Score = 31.6 bits (70), Expect = 1.7
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2

Query: 137 YAGLYHESEGDSEAAKSAMVAACRTPYGIRSGDYMASLAKVHCKCR 274
+A L + A++ + A P+G+++ +Y ASLA+ C+ R
Sbjct: 139 FAALARNHRNTAMVARTWLQHALPMPFGLKAAEYAASLARARCRLR 184


>sp|Q2NSH3|AROC_SODGM Chorismate synthase OS=Sodalis glossinidius
(strain morsitans) GN=aroC PE=3 SV=1
Length = 361

Score = 31.6 bits (70), Expect = 1.7
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Frame = +2

Query: 125 YAHLYAGLYHESEGDSEAAKSAMVAACRT--------PYGIRSGDYMASLAKVHCKCRDW 280
YA Y + G S A ++AM A G+R Y+A + +HC+ +DW
Sbjct: 111 YAQKYGRRDYRGGGRSSARETAMRVAAGAIAKKYLAQQCGVRVRGYLAQMGDIHCELKDW 170


>sp|P39641|BACD_BACSU Alanine-anticapsin ligase bacD OS=Bacillus
subtilis GN=bacD PE=1 SV=1
Length = 472

Score = 30.8 bits (68), Expect = 2.9
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2

Query: 68 GNPGDLIHEFKDGQPYEVFYAHLYAGLYHESEGDSEAAKSAMVAACRTPYGIRSGD 235
G DL D +PY V HLY + ++ E A+ ++ A P G+ GD
Sbjct: 357 GKDADLPDGLLDQEPYYVADCHLYPQHFKQNGQIPETAEDLVIEAIDIPDGLLKGD 412


>sp|Q7N299|AROC_PHOLL Chorismate synthase OS=Photorhabdus
luminescens subsp. laumondii GN=aroC PE=3 SV=1
Length = 361

Score = 30.4 bits (67), Expect = 3.8
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Frame = +2

Query: 125 YAHLYAGLYHESEGDSEAAKSAMVAACRT--------PYGIRSGDYMASLAKVHCKCRDW 280
Y Y + G S A ++AM A YGIR + + +HC+ +DW
Sbjct: 111 YEQKYGIRDYRGGGRSSARETAMRVAAGAIAKKYLLDKYGIRVRACLTQMGNIHCQLKDW 170

Query: 281 DL*E 292
+L E
Sbjct: 171 ELVE 174


>sp|Q218F9|Y1666_RHOPB UPF0317 protein RPC_1666 OS=Rhodopseudomonas
palustris (strain BisB18) GN=RPC_1666 PE=3 SV=1
Length = 271

Score = 30.4 bits (67), Expect = 3.8
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = -3

Query: 302 NPESLIGPSPDTCSGPLLVMPCSLQIEYHKVFCKQLP*PI----WQPQNLPQIHGTGLHI 135
N E G +P G L ++P +L +H+ FC+Q P P P+I GL +
Sbjct: 29 NAEQTAGLAPGYVQGNLAILPENLAASFHR-FCQQNPKPCPIIGMSEVGDPKIPSLGLDL 87

Query: 134 DV 129
D+
Sbjct: 88 DI 89


>sp|Q4R9C4|G2E3_MACFA G2/M phase-specific E3 ubiquitin-protein
ligase OS=Macaca fascicularis GN=QtsA-15505 PE=2 SV=2
Length = 706

Score = 29.3 bits (64), Expect = 8.5
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2

Query: 317 RFTDNWASFSWYIYFIQILTSMADRYYNLERQNNFNHLIPCS 442
+FT N+ASF W +QI+TS NN+ +PC+
Sbjct: 115 QFTGNFASFCWNHRPVQIITS-----------NNYRESLPCT 145


tr_hit_id Q8GUK5
Definition tr|Q8GUK5|Q8GUK5_ARATH Putative uncharacterized protein (At3g05625) OS=Arabidopsis thaliana
Align length 93
Score (bit) 129.0
E-value 9.0e-29
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919486|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_F05.
(460 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q8GUK5|Q8GUK5_ARATH Putative uncharacterized protein (At3g056... 129 9e-29
tr|B6SRQ6|B6SRQ6_MAIZE TPR repeat OS=Zea mays PE=2 SV=1 122 9e-27
tr|A9NZ23|A9NZ23_PICSI Putative uncharacterized protein OS=Picea... 121 2e-26
tr|B7FKP3|B7FKP3_MEDTR Putative uncharacterized protein OS=Medic... 116 5e-25
tr|A5AP52|A5AP52_VITVI Putative uncharacterized protein OS=Vitis... 112 7e-24
tr|A7PRZ7|A7PRZ7_VITVI Chromosome chr14 scaffold_27, whole genom... 112 1e-23
tr|A9TX28|A9TX28_PHYPA Predicted protein OS=Physcomitrella paten... 111 2e-23
tr|Q2HW44|Q2HW44_MEDTR TPR repeat OS=Medicago truncatula GN=MtrD... 106 7e-22
tr|A8IKA9|A8IKA9_CHLRE Predicted protein OS=Chlamydomonas reinha... 94 4e-18
tr|B8A7I6|B8A7I6_ORYSI Putative uncharacterized protein OS=Oryza... 91 2e-17
tr|A2ZST4|A2ZST4_ORYSJ Putative uncharacterized protein OS=Oryza... 91 2e-17
tr|A4RV00|A4RV00_OSTLU Predicted protein (Fragment) OS=Ostreococ... 68 3e-10
tr|B5W0I9|B5W0I9_SPIMA TPR repeat-containing protein OS=Arthrosp... 58 3e-07
tr|B7G6H5|B7G6H5_PHATR Predicted protein OS=Phaeodactylum tricor... 57 5e-07
tr|A0YQA3|A0YQA3_9CYAN Expressed protein OS=Lyngbya sp. PCC 8106... 56 1e-06
tr|Q01C43|Q01C43_OSTTA Chromosome 03 contig 1, DNA sequence OS=O... 52 1e-05
tr|B2J734|B2J734_NOSP7 Expressed protein OS=Nostoc punctiforme (... 51 3e-05
tr|Q3MBA8|Q3MBA8_ANAVT Expressed protein OS=Anabaena variabilis ... 50 6e-05
tr|B8HRQ9|B8HRQ9_9CHRO Putative uncharacterized protein OS=Cyano... 50 7e-05
tr|A3ZQC1|A3ZQC1_9PLAN Expressed protein OS=Blastopirellula mari... 36 0.83
tr|B5YLR8|B5YLR8_THAPS Predicted protein OS=Thalassiosira pseudo... 36 1.1
tr|A9BF80|A9BF80_PETMO TPR repeat-containing protein OS=Petrotog... 34 3.2
tr|A8UXZ6|A8UXZ6_9AQUI Molybdate periplasmic binding protein OS=... 33 5.4
tr|A5HW76|A5HW76_9STRA Photosystem I P700 chlorophyll A apoprote... 33 5.4
tr|B8PA50|B8PA50_9APHY Predicted protein OS=Postia placenta Mad-... 33 7.0
tr|Q4P576|Q4P576_USTMA Putative uncharacterized protein OS=Ustil... 33 7.1
tr|Q7UIN4|Q7UIN4_RHOBA Putative uncharacterized protein OS=Rhodo... 33 9.2
tr|A6LED4|A6LED4_PARD8 Putative outer membrane protein, probably... 33 9.2
tr|Q8MAH7|Q8MAH7_9RHOD Photosystem I P700 chlorophyll A apoprote... 33 9.2
tr|Q5VKA2|Q5VKA2_9PHAE Photosystem I P700 chlorophyll A apoprote... 33 9.2

>tr|Q8GUK5|Q8GUK5_ARATH Putative uncharacterized protein (At3g05625)
OS=Arabidopsis thaliana GN=At3g05625 PE=2 SV=1
Length = 257

Score = 129 bits (323), Expect = 9e-29
Identities = 59/93 (63%), Positives = 72/93 (77%)
Frame = +2

Query: 2 FLEVGQDRRPLMQRAYEVFKKGGNPGDLIHEFKDGQPYEVFYAHLYAGLYHESEGDSEAA 181
FLEVG+D RP+M+ AY +FK GG+P L+++F GQ E FYA LYAGLY+E+EG SE A
Sbjct: 160 FLEVGRDSRPVMREAYNLFKNGGDPEKLVNDFSSGQASEYFYASLYAGLYYEAEGKSENA 219

Query: 182 KSAMVAACRTPYGIRSGDYMASLAKVHCKCRDW 280
K + AAC +PYG RS DYMASLAKVHC CR+W
Sbjct: 220 KFHLTAACGSPYGQRSDDYMASLAKVHCLCRNW 252


>tr|B6SRQ6|B6SRQ6_MAIZE TPR repeat OS=Zea mays PE=2 SV=1
Length = 261

Score = 122 bits (306), Expect = 9e-27
Identities = 55/93 (59%), Positives = 72/93 (77%)
Frame = +2

Query: 2 FLEVGQDRRPLMQRAYEVFKKGGNPGDLIHEFKDGQPYEVFYAHLYAGLYHESEGDSEAA 181
FLEVG D RP+M+ AY + + G +P L+ +F G EVFY+ LYAGLY+ES+ D++ A
Sbjct: 166 FLEVGLDSRPVMREAYALLRSGADPEKLVAKFSSGTDGEVFYSSLYAGLYYESQKDADMA 225

Query: 182 KSAMVAACRTPYGIRSGDYMASLAKVHCKCRDW 280
KS +VAAC++PYG RSGDYMASLA VHC+CR+W
Sbjct: 226 KSHIVAACKSPYGSRSGDYMASLALVHCQCRNW 258


>tr|A9NZ23|A9NZ23_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 275

Score = 121 bits (303), Expect = 2e-26
Identities = 56/95 (58%), Positives = 74/95 (77%)
Frame = +2

Query: 2 FLEVGQDRRPLMQRAYEVFKKGGNPGDLIHEFKDGQPYEVFYAHLYAGLYHESEGDSEAA 181
FLEVG D RP+M++AY +FK GG+P ++I EF + + FYA LYA LY+E++ D AA
Sbjct: 175 FLEVGLDPRPVMRKAYLMFKNGGDPQEIITEFSNRREQYYFYAALYASLYYEAQKDPIAA 234

Query: 182 KSAMVAACRTPYGIRSGDYMASLAKVHCKCRDWDL 286
++AM+AA +PYG+RSGDYMASLAKVHCKCR W +
Sbjct: 235 EAAMIAASCSPYGLRSGDYMASLAKVHCKCRGWKI 269


>tr|B7FKP3|B7FKP3_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=2 SV=1
Length = 265

Score = 116 bits (291), Expect = 5e-25
Identities = 52/94 (55%), Positives = 72/94 (76%)
Frame = +2

Query: 2 FLEVGQDRRPLMQRAYEVFKKGGNPGDLIHEFKDGQPYEVFYAHLYAGLYHESEGDSEAA 181
+LEVG+D RP+M+ Y +FK GG+P L+ F + + + FYA LYAGLY+ES+ +S+AA
Sbjct: 170 YLEVGRDPRPVMRETYNMFKDGGDPEKLVGAFSNSRESDYFYASLYAGLYYESQNESDAA 229

Query: 182 KSAMVAACRTPYGIRSGDYMASLAKVHCKCRDWD 283
K +VAAC++ YG RS DYMASL+KVHC CR+W+
Sbjct: 230 KVHIVAACKSLYGQRSDDYMASLSKVHCLCRNWN 263


>tr|A5AP52|A5AP52_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_004109 PE=4 SV=1
Length = 237

Score = 112 bits (281), Expect = 7e-24
Identities = 54/93 (58%), Positives = 68/93 (73%)
Frame = +2

Query: 2 FLEVGQDRRPLMQRAYEVFKKGGNPGDLIHEFKDGQPYEVFYAHLYAGLYHESEGDSEAA 181
FLE RP+M+ AY +FK GG+P L+ +F Q E FYA LYAGLY+ES+ DS +A
Sbjct: 144 FLEANP--RPVMREAYNMFKDGGDPEKLVAQFSGNQVGEYFYASLYAGLYYESQNDSGSA 201

Query: 182 KSAMVAACRTPYGIRSGDYMASLAKVHCKCRDW 280
K ++AAC++PYG RS DYMASLAKVHC CR+W
Sbjct: 202 KLHLLAACQSPYGQRSDDYMASLAKVHCLCRNW 234


>tr|A7PRZ7|A7PRZ7_VITVI Chromosome chr14 scaffold_27, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00022696001
PE=4 SV=1
Length = 247

Score = 112 bits (279), Expect = 1e-23
Identities = 51/87 (58%), Positives = 64/87 (73%)
Frame = +2

Query: 20 DRRPLMQRAYEVFKKGGNPGDLIHEFKDGQPYEVFYAHLYAGLYHESEGDSEAAKSAMVA 199
D RP+M+ AY +FK GG+P L+ +F Q E FYA LYAGLY+ES+ D +AK ++A
Sbjct: 158 DPRPVMREAYNMFKDGGDPEKLVAQFSGNQAGEYFYASLYAGLYYESQNDPGSAKLHLLA 217

Query: 200 ACRTPYGIRSGDYMASLAKVHCKCRDW 280
AC++PYG RS DYMASLAKVHC CR W
Sbjct: 218 ACQSPYGQRSDDYMASLAKVHCLCRSW 244


>tr|A9TX28|A9TX28_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_199147 PE=4 SV=1
Length = 203

Score = 111 bits (277), Expect = 2e-23
Identities = 51/93 (54%), Positives = 70/93 (75%)
Frame = +2

Query: 2 FLEVGQDRRPLMQRAYEVFKKGGNPGDLIHEFKDGQPYEVFYAHLYAGLYHESEGDSEAA 181
FL+VG+D RP+M+ AYE+F+ G + +L+ E + ++ FYA+LY GLY+ES+ SEAA
Sbjct: 102 FLKVGRDSRPVMRAAYELFRDGVDTKELL-ELANANAHDFFYAYLYVGLYYESQKKSEAA 160

Query: 182 KSAMVAACRTPYGIRSGDYMASLAKVHCKCRDW 280
K A+ A +PYG+RSGDYMA+LAKVHC CR W
Sbjct: 161 KEAITTAVSSPYGLRSGDYMATLAKVHCACRGW 193


>tr|Q2HW44|Q2HW44_MEDTR TPR repeat OS=Medicago truncatula
GN=MtrDRAFT_AC147963g33v2 PE=4 SV=2
Length = 263

Score = 106 bits (264), Expect = 7e-22
Identities = 47/86 (54%), Positives = 65/86 (75%)
Frame = +2

Query: 26 RPLMQRAYEVFKKGGNPGDLIHEFKDGQPYEVFYAHLYAGLYHESEGDSEAAKSAMVAAC 205
RP+M+ Y +FK GG+P L+ F + + + FYA LYAGLY+ES+ +S+AAK +VAAC
Sbjct: 176 RPVMRETYNMFKDGGDPEKLVGAFSNSRESDYFYASLYAGLYYESQNESDAAKVHIVAAC 235

Query: 206 RTPYGIRSGDYMASLAKVHCKCRDWD 283
++ YG RS DYMASL+KVHC CR+W+
Sbjct: 236 KSLYGQRSDDYMASLSKVHCLCRNWN 261


>tr|A8IKA9|A8IKA9_CHLRE Predicted protein OS=Chlamydomonas
reinhardtii GN=TPR2 PE=4 SV=1
Length = 254

Score = 93.6 bits (231), Expect = 4e-18
Identities = 49/110 (44%), Positives = 63/110 (57%), Gaps = 15/110 (13%)
Frame = +2

Query: 2 FLEVGQDRRPLMQRAYEVFKKGGNPGDLIHEFKDGQPYEVFYAHL--------------- 136
FLEVG+D RP+M+ AYE FK G P ++ + D ++ FY L
Sbjct: 139 FLEVGRDSRPVMRAAYECFKTGQPPEKIMAQVTDNGGHDTFYGLLVLIPTHPNCKPSSSQ 198

Query: 137 YAGLYHESEGDSEAAKSAMVAACRTPYGIRSGDYMASLAKVHCKCRDWDL 286
Y GL+HE+EGD A+ A+ AA TPY SGDYMASLA+VHC R W +
Sbjct: 199 YVGLWHEAEGDKAEAEKAVTAAVATPYARLSGDYMASLARVHCLRRGWQV 248


>tr|B8A7I6|B8A7I6_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_01794 PE=4 SV=1
Length = 262

Score = 91.3 bits (225), Expect = 2e-17
Identities = 44/87 (50%), Positives = 58/87 (66%)
Frame = +2

Query: 2 FLEVGQDRRPLMQRAYEVFKKGGNPGDLIHEFKDGQPYEVFYAHLYAGLYHESEGDSEAA 181
FLEVG D R +M+ AY +FK GG+P L F G E+FY+ LY GLY+ES+ D+E A
Sbjct: 162 FLEVGLDSRSVMREAYALFKDGGDPEKLASNFSSGSEGEIFYSSLYTGLYYESQKDAELA 221

Query: 182 KSAMVAACRTPYGIRSGDYMASLAKVH 262
KS +VAACR+PYG RS S +++
Sbjct: 222 KSHIVAACRSPYGSRSSIPTCSKVQIY 248