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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919487
Clone id YMU001_000125_F06
Library
Length 446
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000125_F06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAGCAATGCAAGAACCAGGAAAGCCTTGTCAGCCCAAGCTCAATCCTCCAACAGGAACAG
TGCATTCAAACGGCAGAAAGTTGAAGCATAGGCAAAAGAGGAGGGTGAGATCTCAGAGAG
TGAAGAGCCTCGATATAAAGAAAAACTGGACCAGGAAGCAAGAGAGGAAAGATGGAGAGA
ATGGTGTGAGTCAAATATGCAGGATCAAACGCCGACACTGAAACGCTTACAGAAGTTACA
AAATACAAGCTCCAATCTACCCAAAGATGAGGTGCTCAAACGTGTGAAGAAGTATCTGAA
GCTTCTGGGTAGGAAGATTGACATCGTTCTGCAAGACCATGAAGGTGCAAAAAATATATC
CAGAATTGAGACGAGGCTATGGAATTATGTATCAAAGTTTTCGAATCTGACTGGAGAGCG
CTTAACTAGTCTATACAAAAAACTGA
■■Homology search results ■■ -
sp_hit_id P40201
Definition sp|P40201|CHD1_MOUSE Chromodomain-helicase-DNA-binding protein 1 OS=Mus musculus
Align length 100
Score (bit) 32.3
E-value 0.93
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919487|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_F06.
         (446 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P40201|CHD1_MOUSE Chromodomain-helicase-DNA-binding protein 1...    32   0.93 
sp|O14646|CHD1_HUMAN Chromodomain-helicase-DNA-binding protein 1...    32   1.2  
sp|O14647|CHD2_HUMAN Chromodomain-helicase-DNA-binding protein 2...    30   3.5  
sp|P53694|CWL1_SCHPO Cell lysis protein cwl1 OS=Schizosaccharomy...    30   6.0  

>sp|P40201|CHD1_MOUSE Chromodomain-helicase-DNA-binding protein 1
            OS=Mus musculus GN=Chd1 PE=1 SV=2
          Length = 1711

 Score = 32.3 bits (72), Expect = 0.93
 Identities = 24/100 (24%), Positives = 39/100 (39%)
 Frame = +2

Query: 140  EKLDQEAXXXXXXXXCESNMQDQTPTLKRLQKLQNTSSNLPKDEXXXXXXXXXXXXXXXI 319
            E+LDQ+         C+  M+   P    L++L      L + E               I
Sbjct: 1407 EELDQKTFSI-----CKERMR---PVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHI 1458

Query: 320  DIVLQDHEGAKNISRIETRLWNYVSKFSNLTGERLTSLYK 439
               L+++   + I +    LW +VSKF+     +L  LYK
Sbjct: 1459 TECLKEYSNPEQIKQWRKNLWIFVSKFTEFDARKLHKLYK 1498


>sp|O14646|CHD1_HUMAN Chromodomain-helicase-DNA-binding protein 1
            OS=Homo sapiens GN=CHD1 PE=1 SV=1
          Length = 1709

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 24/100 (24%), Positives = 39/100 (39%)
 Frame = +2

Query: 140  EKLDQEAXXXXXXXXCESNMQDQTPTLKRLQKLQNTSSNLPKDEXXXXXXXXXXXXXXXI 319
            E+LDQ+         C+  M+   P    L++L      L + E               I
Sbjct: 1407 EELDQKTFSI-----CKERMR---PVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHI 1458

Query: 320  DIVLQDHEGAKNISRIETRLWNYVSKFSNLTGERLTSLYK 439
               L+++   + I +    LW +VSKF+     +L  LYK
Sbjct: 1459 TECLKEYTNPEQIKQWRKNLWIFVSKFTEFDARKLHKLYK 1498


>sp|O14647|CHD2_HUMAN Chromodomain-helicase-DNA-binding protein 2
            OS=Homo sapiens GN=CHD2 PE=1 SV=2
          Length = 1828

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 25/100 (25%), Positives = 37/100 (37%)
 Frame = +2

Query: 140  EKLDQEAXXXXXXXXCESNMQDQTPTLKRLQKLQNTSSNLPKDEXXXXXXXXXXXXXXXI 319
            + LDQE         C+  M+   P  K L++L      L   E               I
Sbjct: 1462 DDLDQETFSI-----CKERMR---PVKKALKQLDKPDKGLNVQEQLEHTRNCLLKIGDRI 1513

Query: 320  DIVLQDHEGAKNISRIETRLWNYVSKFSNLTGERLTSLYK 439
               L+ +   ++I      LW +VSKF+     +L  LYK
Sbjct: 1514 AECLKAYSDQEHIKLWRRNLWIFVSKFTEFDARKLHKLYK 1553


>sp|P53694|CWL1_SCHPO Cell lysis protein cwl1 OS=Schizosaccharomyces
           pombe GN=cwl1 PE=2 SV=1
          Length = 308

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -3

Query: 417 SPVRFENFDT*FHSLVSILDIFFAPSWSCRTMSIFLPRSFRYFFTRLSTSSLGRL 253
           S + ++N    F +L+SIL + + PSW       F  R+FRY F   S    G L
Sbjct: 129 SVLTWKNTSCSFSTLMSILALVYVPSWINLPRLFF--RTFRYVFLITSIIEFGGL 181
tr_hit_id A9TTS1
Definition tr|A9TTS1|A9TTS1_PHYPA SNF2 family DNA-dependent ATPase (Fragment) OS=Physcomitrella patens subsp. patens
Align length 87
Score (bit) 77.0
E-value 4.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919487|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_F06.
         (446 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TTS1|A9TTS1_PHYPA SNF2 family DNA-dependent ATPase (Fragmen...    77   4e-13
tr|A9SM64|A9SM64_PHYPA Predicted protein OS=Physcomitrella paten...    77   6e-13
tr|Q9SI41|Q9SI41_ARATH Putative chromodomain-helicase-DNA-bindin...    72   2e-11
tr|Q7XAM4|Q7XAM4_ORYSJ Chromodomain-helicase-DNA-binding protein...    67   3e-10
tr|B8B5J6|B8B5J6_ORYSI Putative uncharacterized protein OS=Oryza...    67   3e-10
tr|A7PQX9|A7PQX9_VITVI Chromosome chr6 scaffold_25, whole genome...    67   3e-10
tr|A3BN25|A3BN25_ORYSJ Putative uncharacterized protein OS=Oryza...    67   3e-10
tr|Q17C31|Q17C31_AEDAE Chromodomain helicase DNA binding protein...    38   0.22 
tr|Q17C30|Q17C30_AEDAE Chromodomain helicase DNA binding protein...    38   0.22 
tr|Q7Q8C2|Q7Q8C2_ANOGA AGAP008698-PA (Fragment) OS=Anopheles gam...    37   0.37 
tr|B0W4T0|B0W4T0_CULQU Chromodomain helicase DNA binding protein...    37   0.63 
tr|A9X4T1|A9X4T1_BOMMO CHD1 OS=Bombyx mori GN=CHD1 PE=2 SV=1           36   0.82 
tr|Q0D3X9|Q0D3X9_ORYSJ Os07g0660200 protein (Fragment) OS=Oryza ...    35   1.4  
tr|Q54Q16|Q54Q16_DICDI Chromo (CHRomatin Organization MOdifier) ...    35   1.4  
tr|B6NFE0|B6NFE0_BRAFL Putative uncharacterized protein OS=Branc...    34   4.1  
tr|B4M9B0|B4M9B0_DROVI GJ18281 OS=Drosophila virilis GN=GJ18281 ...    34   4.1  
tr|B4KHL3|B4KHL3_DROMO GI10771 OS=Drosophila mojavensis GN=GI107...    34   4.1  
tr|B4JCS5|B4JCS5_DROGR GH10643 OS=Drosophila grimshawi GN=GH1064...    34   4.1  
tr|B3MMA3|B3MMA3_DROAN GF14337 OS=Drosophila ananassae GN=GF1433...    34   4.1  
tr|Q5SX10|Q5SX10_MOUSE Novel protein OS=Mus musculus GN=1700125H...    33   5.3  
tr|B4MX23|B4MX23_DROWI GK15574 OS=Drosophila willistoni GN=GK155...    33   5.3  
tr|Q7ZT34|Q7ZT34_TAEGU Chromo-helicase DNA-binding protein OS=Ta...    33   7.0  
tr|Q1LVN0|Q1LVN0_DANRE Novel protein similar to human chromodoma...    33   7.0  

>tr|A9TTS1|A9TTS1_PHYPA SNF2 family DNA-dependent ATPase (Fragment)
            OS=Physcomitrella patens subsp. patens GN=CHR1544 PE=4
            SV=1
          Length = 1445

 Score = 77.0 bits (188), Expect = 4e-13
 Identities = 41/87 (47%), Positives = 53/87 (60%)
 Frame = +2

Query: 185  CESNMQDQTPTLKRLQKLQNTSSNLPKDEXXXXXXXXXXXXXXXIDIVLQDHEGAKNISR 364
            C   M+DQT TL+RLQ+LQ T  +LPK+E               ID +L ++  A N  R
Sbjct: 1355 CAQMMEDQTRTLERLQRLQ-TDFSLPKEEVLRRVKTYLQTLGHKIDSILAENATAPNPDR 1413

Query: 365  IETRLWNYVSKFSNLTGERLTSLYKKL 445
            + TRLWNYVS FSNL G++L  +YKKL
Sbjct: 1414 MATRLWNYVSTFSNLKGDKLAEIYKKL 1440


>tr|A9SM64|A9SM64_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_132084 PE=4 SV=1
          Length = 1569

 Score = 76.6 bits (187), Expect = 6e-13
 Identities = 41/87 (47%), Positives = 53/87 (60%)
 Frame = +2

Query: 185  CESNMQDQTPTLKRLQKLQNTSSNLPKDEXXXXXXXXXXXXXXXIDIVLQDHEGAKNISR 364
            C   M+DQ+ TL  LQKLQ T+ +LPK+E               ID +L ++E   N  R
Sbjct: 1324 CAQMMEDQSRTLGSLQKLQ-TNFSLPKEEVLRRVKTYLQTLGRKIDSILAENEANPNPDR 1382

Query: 365  IETRLWNYVSKFSNLTGERLTSLYKKL 445
            + TRLWNYVS FSNLTG++L  +YKKL
Sbjct: 1383 MATRLWNYVSTFSNLTGDKLAQIYKKL 1409


>tr|Q9SI41|Q9SI41_ARATH Putative chromodomain-helicase-DNA-binding
            protein OS=Arabidopsis thaliana GN=At2g13370 PE=2 SV=1
          Length = 1738

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 39/88 (44%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
 Frame = +2

Query: 185  CESNMQDQTPTLKRLQKLQNTSSNLPKDEXXXXXXXXXXXXXXXID-IVLQDHEGAKNIS 361
            CE  + D+  TL RLQ+LQ TS++LPK++               ID IVL+  E      
Sbjct: 1555 CEDVLADEIKTLGRLQRLQTTSADLPKEKVLFKIRRYLEILGRRIDAIVLEHEEDLYKQD 1614

Query: 362  RIETRLWNYVSKFSNLTGERLTSLYKKL 445
            R+  RLWNYVS FSNL+G+RL  +Y KL
Sbjct: 1615 RMTMRLWNYVSTFSNLSGDRLNQIYSKL 1642


>tr|Q7XAM4|Q7XAM4_ORYSJ Chromodomain-helicase-DNA-binding
           protein-like protein OS=Oryza sativa subsp. japonica
           GN=OJ1477_F01.130-1 PE=4 SV=1
          Length = 432

 Score = 67.4 bits (163), Expect = 3e-10
 Identities = 34/87 (39%), Positives = 48/87 (55%)
 Frame = +2

Query: 185 CESNMQDQTPTLKRLQKLQNTSSNLPKDEXXXXXXXXXXXXXXXIDIVLQDHEGAKNISR 364
           C   + D+   LKRL +LQNTS NLPK++               I  ++  H  +   SR
Sbjct: 212 CSEVLDDEQEILKRLDRLQNTSVNLPKEKVLSRIRKYLQIIGNKIGEIVDQHSESYKQSR 271

Query: 365 IETRLWNYVSKFSNLTGERLTSLYKKL 445
           +  RLWNYV+ FS+++GE+L  LY KL
Sbjct: 272 MAMRLWNYVANFSSMSGEQLHDLYLKL 298


>tr|B8B5J6|B8B5J6_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_27196 PE=4 SV=1
          Length = 1734

 Score = 67.4 bits (163), Expect = 3e-10
 Identities = 34/87 (39%), Positives = 48/87 (55%)
 Frame = +2

Query: 185  CESNMQDQTPTLKRLQKLQNTSSNLPKDEXXXXXXXXXXXXXXXIDIVLQDHEGAKNISR 364
            C   + D+   LKRL +LQNTS NLPK++               I  ++  H  +   SR
Sbjct: 1514 CSEVLDDEQEILKRLDRLQNTSVNLPKEKVLSRIRKYLQIIGNKIGEIVDQHSESYKQSR 1573

Query: 365  IETRLWNYVSKFSNLTGERLTSLYKKL 445
            +  RLWNYV+ FS+++GE+L  LY KL
Sbjct: 1574 MAMRLWNYVANFSSMSGEQLHDLYLKL 1600


>tr|A7PQX9|A7PQX9_VITVI Chromosome chr6 scaffold_25, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00022239001
            PE=4 SV=1
          Length = 1719

 Score = 67.4 bits (163), Expect = 3e-10
 Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
 Frame = +2

Query: 185  CESNMQDQTPTLKRLQKLQNTSSNLPKDEXXXXXXXXXXXXXXXIDIVLQDHEGAK-NIS 361
            CE  M+ +  TL RL KLQ TS+NLPKD                ID ++ +H+  +    
Sbjct: 1522 CEDVMKTEIKTLNRLHKLQTTSANLPKDLVLSKIRKYLQLLGRRIDQIVLEHDKEQYKQD 1581

Query: 362  RIETRLWNYVSKFSNLTGERLTSLYKKL 445
            R+  RLWNY+S FSNL+GE+L  ++ KL
Sbjct: 1582 RMIMRLWNYISTFSNLSGEKLRQIHSKL 1609


>tr|A3BN25|A3BN25_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_024447 PE=4 SV=1
          Length = 1700

 Score = 67.4 bits (163), Expect = 3e-10
 Identities = 34/87 (39%), Positives = 48/87 (55%)
 Frame = +2

Query: 185  CESNMQDQTPTLKRLQKLQNTSSNLPKDEXXXXXXXXXXXXXXXIDIVLQDHEGAKNISR 364
            C   + D+   LKRL +LQNTS NLPK++               I  ++  H  +   SR
Sbjct: 1480 CSEVLDDEQEILKRLDRLQNTSVNLPKEKVLSRIRKYLQIIGNKIGEIVDQHSESYKQSR 1539

Query: 365  IETRLWNYVSKFSNLTGERLTSLYKKL 445
            +  RLWNYV+ FS+++GE+L  LY KL
Sbjct: 1540 MAMRLWNYVANFSSMSGEQLHDLYLKL 1566


>tr|Q17C31|Q17C31_AEDAE Chromodomain helicase DNA binding protein
            OS=Aedes aegypti GN=AAEL004716 PE=4 SV=1
          Length = 2002

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 23/85 (27%), Positives = 37/85 (43%)
 Frame = +2

Query: 185  CESNMQDQTPTLKRLQKLQNTSSNLPKDEXXXXXXXXXXXXXXXIDIVLQDHEGAKNISR 364
            C+  M+   P  K L+ L N    LP +E               I+  L  ++  + I  
Sbjct: 1574 CKEKMR---PVKKALKTLDNPDQTLPAEEQVSQTRACLLSIGNQINQCLLVYKDPEKIKE 1630

Query: 365  IETRLWNYVSKFSNLTGERLTSLYK 439
              + LW +VSKF+ +  ++L  LYK
Sbjct: 1631 WRSNLWYFVSKFTEVDAKKLFKLYK 1655


>tr|Q17C30|Q17C30_AEDAE Chromodomain helicase DNA binding protein
            OS=Aedes aegypti GN=AAEL004716 PE=4 SV=1
          Length = 2001

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 23/85 (27%), Positives = 37/85 (43%)
 Frame = +2

Query: 185  CESNMQDQTPTLKRLQKLQNTSSNLPKDEXXXXXXXXXXXXXXXIDIVLQDHEGAKNISR 364
            C+  M+   P  K L+ L N    LP +E               I+  L  ++  + I  
Sbjct: 1574 CKEKMR---PVKKALKTLDNPDQTLPAEEQVSQTRACLLSIGNQINQCLLVYKDPEKIKE 1630

Query: 365  IETRLWNYVSKFSNLTGERLTSLYK 439
              + LW +VSKF+ +  ++L  LYK
Sbjct: 1631 WRSNLWYFVSKFTEVDAKKLFKLYK 1655


>tr|Q7Q8C2|Q7Q8C2_ANOGA AGAP008698-PA (Fragment) OS=Anopheles gambiae
            GN=AGAP008698 PE=4 SV=4
          Length = 2083

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 21/85 (24%), Positives = 36/85 (42%)
 Frame = +2

Query: 185  CESNMQDQTPTLKRLQKLQNTSSNLPKDEXXXXXXXXXXXXXXXIDIVLQDHEGAKNISR 364
            C+  M+   P  K L+ L N   +L ++E               I++ L ++   +    
Sbjct: 1631 CKEKMR---PVKKALKTLDNPDESLSQEEQLRQTRACLLSIGDQINLCLAEYRDPEKAKE 1687

Query: 365  IETRLWNYVSKFSNLTGERLTSLYK 439
              + LW +VSKF+     +L  LYK
Sbjct: 1688 WRSNLWYFVSKFTEFDARKLFKLYK 1712