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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919492
Clone id YMU001_000125_F11
Library
Length 470
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000125_F11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCACCCTCTGCTGAAATCCAATCCCATCATTGTTTGTGTTCAAATCGAGTCCCTTCCCTA
TGCCATCGGATCCGCACATCACAAGGGCACCTGATGATCCCAACATCCTATTTTTCTCAT
GCGATGAAGCCAGACCGATGACCTGCTCCATCGACAATGCAGCTCTTCTGGGCTCTGGCC
TTTCCACACAATGGAAGGTTCTACAAGTCTGCTCGCAATCTCTTATTCCTCCTTGTTTAT
GAATCCCATCATAGCCTTCCAAACCACTAAAATGCATTAAATGCACTGACCCCTCTGAGT
TGCTTGTATTCATTGCGCACGCATTGCTTGATGATCTCTCATCTAGAGAGGAACACCCAT
CTCTTGATGCAATCACTATGCTTGGCTTGACATCTTCCTCCTCATTCTGCCGCAATTGTG
TGTTAAAATCACAAACTTTTAACCTCTTGATATTACCTGATTGTACATCA
■■Homology search results ■■ -
sp_hit_id Q9Z959
Definition sp|Q9Z959|SYM_CHLPN Methionyl-tRNA synthetase OS=Chlamydia pneumoniae
Align length 36
Score (bit) 33.5
E-value 0.48
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919492|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_F11.
         (470 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Z959|SYM_CHLPN Methionyl-tRNA synthetase OS=Chlamydia pneum...    33   0.48 
sp|Q5QJC2|DCR1C_CHICK Protein artemis OS=Gallus gallus GN=DCLRE1...    33   0.82 
sp|A2Q9N7|KMO1_ASPNC Kynurenine 3-monooxygenase 1 OS=Aspergillus...    32   1.8  
sp|P61340|EFTS_WOLPM Elongation factor Ts OS=Wolbachia pipientis...    32   1.8  
sp|Q255A6|SYM_CHLFF Methionyl-tRNA synthetase OS=Chlamydophila f...    31   2.4  
sp|Q822N0|SYM_CHLCV Methionyl-tRNA synthetase OS=Chlamydophila c...    31   3.1  
sp|Q5L5M3|SYM_CHLAB Methionyl-tRNA synthetase OS=Chlamydophila a...    31   3.1  
sp|P78985|K6PF_ASPNG 6-phosphofructokinase OS=Aspergillus niger ...    30   4.1  
sp|Q54IG2|Y8886_DICDI Heat shock protein DDB_G0288861 OS=Dictyos...    30   5.3  
sp|B3MG50|KTU_DROAN Protein kintoun OS=Drosophila ananassae GN=P...    30   5.3  
sp|Q9PL07|SYM_CHLMU Methionyl-tRNA synthetase OS=Chlamydia murid...    30   6.9  
sp|Q8TDY8|NOPE_HUMAN Neighbor of punc e11 OS=Homo sapiens GN=NOP...    30   6.9  
sp|Q9JJN2|ZFHX4_MOUSE Zinc finger homeobox protein 4 OS=Mus musc...    29   9.1  
sp|Q2QLC0|MET_CALMO Hepatocyte growth factor receptor OS=Callice...    29   9.1  
sp|B4MPK3|KTU_DROWI Protein kintoun OS=Drosophila willistoni GN=...    29   9.1  

>sp|Q9Z959|SYM_CHLPN Methionyl-tRNA synthetase OS=Chlamydia
           pneumoniae GN=metG PE=3 SV=2
          Length = 551

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -2

Query: 109 RMLGSSGALVMCGSDGIGKGLDLNTNNDGIGFQQRV 2
           R+LG    L +CGSD  G  + LN + +G+G+Q+ V
Sbjct: 38  RLLGDD-VLYICGSDEFGIAITLNADREGLGYQEYV 72


>sp|Q5QJC2|DCR1C_CHICK Protein artemis OS=Gallus gallus GN=DCLRE1C
           PE=2 SV=1
          Length = 714

 Score = 32.7 bits (73), Expect = 0.82
 Identities = 30/116 (25%), Positives = 47/116 (40%)
 Frame = -2

Query: 406 NEEEDVKPSIVIASRDGCSSLDERSSSNACAMNTSNSEGSVHLMHFSGLEGYDGIHKQGG 227
           +E ED  PS   A        D    S++  +++ NS  S H+    G +G+D       
Sbjct: 518 SENEDNFPSSADAGGSQSLFSDSDGVSDSTHISSQNSSQSTHISE-QGSQGWDSQMDTVL 576

Query: 226 IRDCEQTCRTFHCVERPEPRRAALSMEQVIGLASSHEKNRMLGSSGALVMCGSDGI 59
           I   E+    F C  R   R A LS +      +   + ++LG + +   C SD I
Sbjct: 577 ITSQERNAADFSCFSRGGSRTALLSHDTPRDSQADDSRWKLLGQNPS---CASDVI 629


>sp|A2Q9N7|KMO1_ASPNC Kynurenine 3-monooxygenase 1 OS=Aspergillus
           niger (strain CBS 513.88 / FGSC A1513) GN=bna4-1 PE=3
           SV=1
          Length = 475

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 21/86 (24%), Positives = 34/86 (39%)
 Frame = -2

Query: 337 RSSSNACAMNTSNSEGSVHLMHFSGLEGYDGIHKQGGIRDCEQTCRTFHCVERPEPRRAA 158
           RS  N   +   ++  +VH+ +   L G D           +Q C TFH + RP+     
Sbjct: 115 RSEINQSLLEELSAFPNVHIFYKHRLNGLD----------MKQKCATFHNISRPQEPSHE 164

Query: 157 LSMEQVIGLASSHEKNRMLGSSGALV 80
              + +IG   +H   R   S  A +
Sbjct: 165 TKFDLLIGADGAHSTTRFFLSRYAKI 190


>sp|P61340|EFTS_WOLPM Elongation factor Ts OS=Wolbachia pipientis
           wMel GN=tsf PE=3 SV=1
          Length = 286

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 18/75 (24%), Positives = 36/75 (48%)
 Frame = -2

Query: 229 GIRDCEQTCRTFHCVERPEPRRAALSMEQVIGLASSHEKNRMLGSSGALVMCGSDGIGKG 50
           G+ DC++        E     + A+   + IGLA + +K+  + S G + MC ++  G  
Sbjct: 18  GLSDCKKALE-----ECDGDIKKAVDKLRTIGLAKADKKSDRVASDGLVAMCLTENCGVL 72

Query: 49  LDLNTNNDGIGFQQR 5
           ++LN   D +   ++
Sbjct: 73  IELNCETDFVARNEK 87


>sp|Q255A6|SYM_CHLFF Methionyl-tRNA synthetase OS=Chlamydophila
           felis (strain Fe/C-56) GN=metG PE=3 SV=1
          Length = 551

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 109 RMLGSSGALVMCGSDGIGKGLDLNTNNDGIGFQQRV 2
           R+LG    L +CGSD  G  + LN    G+G+Q+ V
Sbjct: 38  RLLGDD-VLYICGSDEYGIAITLNAERAGLGYQEYV 72


>sp|Q822N0|SYM_CHLCV Methionyl-tRNA synthetase OS=Chlamydophila
           caviae GN=metG PE=3 SV=1
          Length = 550

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 109 RMLGSSGALVMCGSDGIGKGLDLNTNNDGIGFQQRV 2
           R+LG    L +CGSD  G  + LN    G+G+Q+ V
Sbjct: 38  RLLGDD-VLYICGSDEYGIAITLNAERVGLGYQEYV 72


>sp|Q5L5M3|SYM_CHLAB Methionyl-tRNA synthetase OS=Chlamydophila
           abortus GN=metG PE=3 SV=1
          Length = 551

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 109 RMLGSSGALVMCGSDGIGKGLDLNTNNDGIGFQQRV 2
           R+LG    L +CGSD  G  + LN    G+G+Q+ V
Sbjct: 38  RLLGDD-VLYICGSDEYGIAITLNAERAGMGYQEYV 72


>sp|P78985|K6PF_ASPNG 6-phosphofructokinase OS=Aspergillus niger
           GN=pfkA PE=3 SV=1
          Length = 783

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 26/87 (29%), Positives = 35/87 (40%)
 Frame = -2

Query: 301 NSEGSVHLMHFSGLEGYDGIHKQGGIRDCEQTCRTFHCVERPEPRRAALSMEQVIGLASS 122
           N    +  +H+  + G+     +GG       C TF   ERP   RAA            
Sbjct: 58  NGGDMIRQLHWEDVRGW---LSRGGTLIGSARCMTFR--ERPGRLRAA------------ 100

Query: 121 HEKNRMLGSSGALVMCGSDGIGKGLDL 41
             KN +L    ALV+CG DG   G D+
Sbjct: 101 --KNMVLRGIDALVVCGGDGSLTGADV 125


>sp|Q54IG2|Y8886_DICDI Heat shock protein DDB_G0288861
           OS=Dictyostelium discoideum GN=DDB_G0288861 PE=3 SV=1
          Length = 722

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/45 (35%), Positives = 29/45 (64%)
 Frame = -2

Query: 412 RQNEEEDVKPSIVIASRDGCSSLDERSSSNACAMNTSNSEGSVHL 278
           RQ+ +E  +PS +  S  G SS+++ SSS++  + + NS+ +V L
Sbjct: 252 RQDSKEISQPSELQRSNFGESSVNQPSSSSSSLLGSDNSQSNVDL 296


>sp|B3MG50|KTU_DROAN Protein kintoun OS=Drosophila ananassae
           GN=Ppi20 PE=3 SV=1
          Length = 843

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = -2

Query: 361 DGCSSLDERSSSNACAMNTSNSEGSVHLMHFSGLEGYDGIHKQGGIRD-CEQTCR 200
           D CSS+D+ SSS +C+++ S +  S+    F G+   D      G+ + C++T R
Sbjct: 690 DSCSSIDDYSSSYSCSVDASGA--SLFSQSFGGIPEED--RSDAGLSESCKKTVR 740
tr_hit_id B3M965
Definition tr|B3M965|B3M965_DROAN GF10324 OS=Drosophila ananassae
Align length 77
Score (bit) 33.1
E-value 7.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919492|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_F11.
         (470 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3M965|B3M965_DROAN GF10324 OS=Drosophila ananassae GN=GF1032...    33   7.1  
tr|A5K7F2|A5K7F2_PLAVI Putative uncharacterized protein OS=Plasm...    33   9.3  
tr|A0CW74|A0CW74_PARTE Chromosome undetermined scaffold_3, whole...    33   9.3  

>tr|B3M965|B3M965_DROAN GF10324 OS=Drosophila ananassae GN=GF10324
            PE=4 SV=1
          Length = 1660

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
 Frame = -2

Query: 403  EEEDVKPSIVIASRDGCSSLDERSSSN-ACAMNTSNSEGSVHLMHFSGLEGYDGIHKQGG 227
            E  D +P  ++ + D C  +DE  + N  C+    NSEGS       G E  +       
Sbjct: 955  EPIDCEPGFILGTDDRCEDIDECQAKNGGCSHRCENSEGSFKCSCLPGFELDEDQRTCQD 1014

Query: 226  IRDC---EQTCRTFHCV 185
            + +C   + +C+   CV
Sbjct: 1015 VDECATDKNSCQAGKCV 1031


>tr|A5K7F2|A5K7F2_PLAVI Putative uncharacterized protein
           OS=Plasmodium vivax GN=PVX_094855 PE=4 SV=1
          Length = 1467

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = -2

Query: 181 RPEPRRAALSMEQVIGLASSHEKNRMLGSSGALVMCGSDGIGKGLDLNTNNDGIG 17
           R  PR A L +E+  G A+S +++ +    GA V    DG G   D++ N DG G
Sbjct: 378 RSAPREADLPLEEECGAANSKKEDNVRAEDGADVDGNGDGNG---DVDGNGDGNG 429


>tr|A0CW74|A0CW74_PARTE Chromosome undetermined scaffold_3, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00001243001 PE=4 SV=1
          Length = 451

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = -2

Query: 442 LKVCDFNTQLRQNEEEDVKPSIVIASRDGCSSLDERSSSNACAMNTSNSEGSVHLMHFSG 263
           +  CD  TQ +  +EED++    +AS   C S   ++S     ++    EGSV  +H   
Sbjct: 151 MPTCDEATQYQDEQEEDIQTISDVASCRICFS--SKASETNPLISPCKCEGSVKYIHLEC 208

Query: 262 LEGYDGIH---KQG 230
           L+ + GI    KQG
Sbjct: 209 LQKWIGIQLKIKQG 222