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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919507
Clone id YMU001_000125_H04
Library
Length 430
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000125_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATTCGCGGCCGCGAATTCTTCCAGTTATCGAAATCTCACCATTGCCCAATACTATCACTT
CACATCAGCCTTACTGTAATCGCCGCAATCCTTTGCCGCTCTCTTAGCAGACTGGCATCC
TCATGGATAAAGGAAACTGTGCCATGAACATCACCATCAAATGCTGCAGAATTGACATGG
GTGTCTACTACAATCCAGGCCACATCTTCAATGCGACTTGTGGACCATACCCGAGGCTCG
TCAGAGTACTCAATCATCTTACAACTTTCGCAGTTCCTGATAGTATCTGATCAACCAAGG
CTTCTGGTAGGCTTCCCTTGGACTGAAAATGCCTCATGTGAAGTATCGGCTCACAACCAA
GATCAGCAACAGAAATGCCGGAAATATCGTTCGTGTTGAACCTCTTTGCTTGTTGCAAGT
TGAGAGAATG
■■Homology search results ■■ -
sp_hit_id Q3SYW2
Definition sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus
Align length 60
Score (bit) 30.0
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919507|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_H04.
         (404 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1        30   3.7  
sp|P49048|GPI8_CAEEL Putative GPI-anchor transamidase OS=Caenorh...    30   4.8  
sp|Q86GC9|ACES_CULTO Acetylcholinesterase (Fragment) OS=Culex to...    29   6.3  
sp|Q867X2|ACES_CULQU Acetylcholinesterase (Fragment) OS=Culex qu...    29   6.3  
sp|Q867X3|ACES_CULPP Acetylcholinesterase (Fragment) OS=Culex pi...    29   6.3  
sp|Q86GC8|ACES_CULPI Acetylcholinesterase OS=Culex pipiens GN=AC...    29   6.3  
sp|Q9RXL3|MURE_DEIRA UDP-N-acetylmuramyl-tripeptide synthetase O...    29   8.2  
sp|P31468|CBRB_ECOLI Inner membrane protein cbrB OS=Escherichia ...    29   8.2  

>sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1
          Length = 750

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +1

Query: 109 NCAMNITIKCCRIDMGVYYNPGHIFNATCG----PYPRLVRVLNHLTTFAVPDSI*STKA 276
           +C  N+ I      +   +NPG I   +C     PYP + R+      + +P S  STKA
Sbjct: 23  SCPKNVNISGGSFTLSNGWNPGSILTYSCPLGHYPYPVVTRLCKSNGQWQIPRSTRSTKA 82


>sp|P49048|GPI8_CAEEL Putative GPI-anchor transamidase
           OS=Caenorhabditis elegans GN=T05E11.6 PE=1 SV=3
          Length = 319

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = -3

Query: 249 NCESCKMIEYSDEPRVWSTSRI---EDVAWIVVDTHVNSAAFDGDVHGTVSFIHEDASLL 79
           +C S  M E+ D P V S S     E+     VDT +     D   H TV+F+ ++   L
Sbjct: 197 SCRSASMYEWIDSPNVLSLSSSLTHEESYSYDVDTDIGVYVIDRYTHYTVNFLTKEVKAL 256


>sp|Q86GC9|ACES_CULTO Acetylcholinesterase (Fragment) OS=Culex
           torrentium GN=ACE-1 PE=3 SV=1
          Length = 132

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 98  WIKETVP*TSPSNAAELTWV--STTIQATSSMRLVDHTRGSSEYSIILQLSQFLIVS 262
           +I   VP   P NAA + W+        T+++ + DH   +SE ++I+   Q+ + S
Sbjct: 74  YINVVVPRPRPKNAAVMLWIFGGGFYSGTATLDVYDHRTLASEENVIVVSLQYRVAS 130


>sp|Q867X2|ACES_CULQU Acetylcholinesterase (Fragment) OS=Culex
           quinquefasciatus GN=ACE-1 PE=3 SV=1
          Length = 132

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 98  WIKETVP*TSPSNAAELTWV--STTIQATSSMRLVDHTRGSSEYSIILQLSQFLIVS 262
           +I   VP   P NAA + W+        T+++ + DH   +SE ++I+   Q+ + S
Sbjct: 74  YINVVVPRPRPKNAAVMLWIFGGGFYSGTATLDVYDHRTLASEENVIVVSLQYRVAS 130


>sp|Q867X3|ACES_CULPP Acetylcholinesterase (Fragment) OS=Culex
           pipiens pipiens GN=ACE-1 PE=3 SV=1
          Length = 132

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 98  WIKETVP*TSPSNAAELTWV--STTIQATSSMRLVDHTRGSSEYSIILQLSQFLIVS 262
           +I   VP   P NAA + W+        T+++ + DH   +SE ++I+   Q+ + S
Sbjct: 74  YINVVVPRPRPKNAAVMLWIFGGGFYSGTATLDVYDHRTLASEENVIVVSLQYRVAS 130


>sp|Q86GC8|ACES_CULPI Acetylcholinesterase OS=Culex pipiens GN=ACHE1
           PE=2 SV=2
          Length = 702

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 98  WIKETVP*TSPSNAAELTWV--STTIQATSSMRLVDHTRGSSEYSIILQLSQFLIVS 262
           +I   VP   P NAA + W+        T+++ + DH   +SE ++I+   Q+ + S
Sbjct: 224 YINVVVPRPRPKNAAVMLWIFGGGFYSGTATLDVYDHRTLASEENVIVVSLQYRVAS 280


>sp|Q9RXL3|MURE_DEIRA UDP-N-acetylmuramyl-tripeptide synthetase
           OS=Deinococcus radiodurans GN=murE PE=3 SV=1
          Length = 490

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 198 STSRIEDVAW-IVVDTHVNSAAFDGDVHGTVSFIHEDASLLRERQRIAAITV 46
           S  R+  V W + V TH++S   D   HGT+     D   L ER R A + V
Sbjct: 190 SLDRVRGVDWDVAVWTHLSSEHLD--FHGTLDNYFADKRKLVERARFAVLNV 239


>sp|P31468|CBRB_ECOLI Inner membrane protein cbrB OS=Escherichia
           coli (strain K12) GN=cbrB PE=1 SV=1
          Length = 155

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -1

Query: 389 QQAKRFNTNDISGISVADLGCEPILHMRHFQSKGSLPEALVDQILSGTAKVVR*LSTL 216
           Q+  R     I G+ + ++ C  I+H+     KG     L + ILSG + VVR +  L
Sbjct: 76  QKRYRCLAGGIGGVVITEIYCAVIVHI-----KGMASSELFENILSGDSLVVRIIPAL 128
tr_hit_id Q9FGS4|Q9FGS4_ARATH Gb
Definition tr|Q9FGS4|Q9FGS4_ARATH Gb|AAF26953.1 (Putative uncharacterized protein At5g50210) (Putative uncharacterized protein) OS=Arabidopsis thaliana
Align length 48
Score (bit) 56.2
E-value 8.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919507|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_H04.
         (404 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9FGS4|Q9FGS4_ARATH Gb|AAF26953.1 (Putative uncharacterized p...    56   8e-07
tr|A7PCQ2|A7PCQ2_VITVI Chromosome chr17 scaffold_12, whole genom...    55   1e-06
tr|Q2QTL0|Q2QTL0_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    55   2e-06
tr|Q2QTK9|Q2QTK9_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    55   2e-06
tr|A3CGJ6|A3CGJ6_ORYSJ Putative uncharacterized protein OS=Oryza...    53   7e-06
tr|A4S9B2|A4S9B2_OSTLU Predicted protein OS=Ostreococcus lucimar...    47   4e-04
tr|Q00T95|Q00T95_OSTTA Homology to unknown gene OS=Ostreococcus ...    45   0.002
tr|B8BP70|B8BP70_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.002
tr|A9RPD6|A9RPD6_PHYPA Predicted protein (Fragment) OS=Physcomit...    40   0.045
tr|A9SEY5|A9SEY5_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.077
tr|A6GBP5|A6GBP5_9DELT Quinolinate synthetase complex, A subunit...    38   0.22 
tr|Q0VMQ7|Q0VMQ7_ALCBS Peptide synthetase, putative OS=Alcanivor...    34   3.2  
tr|B3U1Y9|B3U1Y9_9MARC Pentatricopeptide repeat protein (Fragmen...    34   3.2  
tr|B3U1K7|B3U1K7_9MARC Pentatricopeptide repeat protein (Fragmen...    34   3.2  
tr|B3U1X9|B3U1X9_9MARC Pentatricopeptide repeat protein (Fragmen...    33   9.4  

>tr|Q9FGS4|Q9FGS4_ARATH Gb|AAF26953.1 (Putative uncharacterized
           protein At5g50210) (Putative uncharacterized protein)
           OS=Arabidopsis thaliana GN=At5g50210 PE=2 SV=1
          Length = 718

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 26/48 (54%), Positives = 33/48 (68%)
 Frame = -1

Query: 383 AKRFNTNDISGISVADLGCEPILHMRHFQSKGSLPEALVDQILSGTAK 240
           A+RF      G  +AD+GCEPILHMRHFQ+   LP+ LV Q+LS  +K
Sbjct: 670 AERFKRQTPQGKLIADVGCEPILHMRHFQANKELPDKLVHQVLSCESK 717


>tr|A7PCQ2|A7PCQ2_VITVI Chromosome chr17 scaffold_12, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015962001
           PE=4 SV=1
          Length = 742

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 26/44 (59%), Positives = 33/44 (75%)
 Frame = -1

Query: 386 QAKRFNTNDISGISVADLGCEPILHMRHFQSKGSLPEALVDQIL 255
           +A RF+    +G S+AD+GCEPIL+MRHFQ+   LPE LV QIL
Sbjct: 687 EAGRFHLQTPNGNSIADVGCEPILNMRHFQATKELPEKLVSQIL 730


>tr|Q2QTL0|Q2QTL0_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=LOC_Os12g19304 PE=4 SV=1
          Length = 475

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 25/46 (54%), Positives = 31/46 (67%)
 Frame = -1

Query: 386 QAKRFNTNDISGISVADLGCEPILHMRHFQSKGSLPEALVDQILSG 249
           QA RFN     G  VA++GCEPILHMRHFQ+   LP+ LV  ++ G
Sbjct: 424 QASRFNAKTPLGKLVAEVGCEPILHMRHFQATKRLPDKLVHHVIHG 469


>tr|Q2QTK9|Q2QTK9_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=LOC_Os12g19304 PE=4 SV=1
          Length = 413

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 25/46 (54%), Positives = 31/46 (67%)
 Frame = -1

Query: 386 QAKRFNTNDISGISVADLGCEPILHMRHFQSKGSLPEALVDQILSG 249
           QA RFN     G  VA++GCEPILHMRHFQ+   LP+ LV  ++ G
Sbjct: 362 QASRFNAKTPLGKLVAEVGCEPILHMRHFQATKRLPDKLVHHVIHG 407


>tr|A3CGJ6|A3CGJ6_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_034418 PE=4 SV=1
          Length = 752

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 25/47 (53%), Positives = 31/47 (65%)
 Frame = -1

Query: 386 QAKRFNTNDISGISVADLGCEPILHMRHFQSKGSLPEALVDQILSGT 246
           QA RFN     G  VA++GCEPILHMRHFQ+   LP+ LV  ++  T
Sbjct: 664 QASRFNAKTPLGKLVAEVGCEPILHMRHFQATKRLPDKLVHHVIHVT 710


>tr|A4S9B2|A4S9B2_OSTLU Predicted protein OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_28143 PE=4 SV=1
          Length = 579

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 21/47 (44%), Positives = 31/47 (65%)
 Frame = -1

Query: 398 LNLQQAKRFNTNDISGISVADLGCEPILHMRHFQSKGSLPEALVDQI 258
           L  Q+ +++ + D +G S+A  GC PILHMRHFQ   +  +ALV+ I
Sbjct: 530 LAAQEPRKYESADGAGPSIASQGCVPILHMRHFQKNKTFSDALVEDI 576


>tr|Q00T95|Q00T95_OSTTA Homology to unknown gene OS=Ostreococcus
           tauri GN=Ot17g01940 PE=4 SV=1
          Length = 622

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 20/47 (42%), Positives = 29/47 (61%)
 Frame = -1

Query: 398 LNLQQAKRFNTNDISGISVADLGCEPILHMRHFQSKGSLPEALVDQI 258
           L  Q+ +++ + D +G S+A  GC PILHMRHFQ   +  + LV  I
Sbjct: 572 LAAQEPRKYESEDGTGPSIASQGCVPILHMRHFQKNKTFSDELVTDI 618


>tr|B8BP70|B8BP70_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_38036 PE=4 SV=1
          Length = 676

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 20/30 (66%), Positives = 22/30 (73%)
 Frame = -1

Query: 386 QAKRFNTNDISGISVADLGCEPILHMRHFQ 297
           QA RFN     G  VA++GCEPILHMRHFQ
Sbjct: 646 QASRFNAKTPLGKLVAEVGCEPILHMRHFQ 675


>tr|A9RPD6|A9RPD6_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_117327 PE=4 SV=1
          Length = 638

 Score = 40.4 bits (93), Expect = 0.045
 Identities = 18/27 (66%), Positives = 20/27 (74%)
 Frame = -1

Query: 377 RFNTNDISGISVADLGCEPILHMRHFQ 297
           R  T  I G ++ DLGCEPILHMRHFQ
Sbjct: 588 RTYTTLIDGQTLGDLGCEPILHMRHFQ 614


>tr|A9SEY5|A9SEY5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_128647 PE=4 SV=1
          Length = 668

 Score = 39.7 bits (91), Expect = 0.077
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = -1

Query: 359 ISGISVADLGCEPILHMRHFQ 297
           I G ++ DLGCEPILHMRHFQ
Sbjct: 642 IDGQALGDLGCEPILHMRHFQ 662