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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919516
Clone id YMU001_000126_A04
Library
Length 489
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000126_A04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGGTACTCGCCAGCAGGCGGACCTGAAATCAAGTCCTTCCAAGACTTGACTTTTATTGGA
GTACCAGGCGTAGTTGGTTCAGATGATGGAGCATCATGGGATGTTACTGAAGTCCTTCCA
GCAGCCAGCTCCGACCTATCGGAAACTGATGAGTCCATTCGCCTGGATGTGCAAACCTGC
TTATCTCTCTGTTCTCTGCCATCCTTGGTTGATGATGACCTGGATAGCACTGTTTCAACA
CTATCAGGGATCTCATGAGCATCTGATGTGGAAAAAATCTTCAGCCCTGATTTCCCTGAT
CCTAATGCCTTTCCAGCATGACTGTCTGCCTTAGTTGGAACAACAGAAAATACCTGAGCA
AAGCTTGTTTGCGGGTACCCACCAAACACATCGTCAGAGTCAACAAAAGATTGCAGCATT
GCGATATTGATGCCATCCATAGCTCCTGCTGAACTCTTTGCATGTCCAGAGTACCTGCAG
GTAATATCT
■■Homology search results ■■ -
sp_hit_id Q14112
Definition sp|Q14112|NID2_HUMAN Nidogen-2 OS=Homo sapiens
Align length 46
Score (bit) 31.2
E-value 2.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919516|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_A04.
         (489 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q14112|NID2_HUMAN Nidogen-2 OS=Homo sapiens GN=NID2 PE=1 SV=2       31   2.7  
sp|Q51494|NDOB_PSEAE Naphthalene 1,2-dioxygenase subunit alpha O...    31   3.4  
sp|Q640Z9|LRC14_XENLA Leucine-rich repeat-containing protein 14 ...    31   3.4  
sp|P36286|POLG_SMSV1 Genome polyprotein OS=San Miguel sea lion v...    30   4.5  
sp|O07824|NDOB_PSEFL Naphthalene 1,2-dioxygenase subunit alpha O...    30   5.8  
sp|P0A111|NDOB_PSEU8 Naphthalene 1,2-dioxygenase subunit alpha O...    30   7.6  
sp|P0A110|NDOB_PSEPU Naphthalene 1,2-dioxygenase subunit alpha O...    30   7.6  
sp|Q9Z1N3|MYO9A_RAT Myosin-IXa OS=Rattus norvegicus GN=Myo9a PE=...    29   9.9  
sp|Q8C170|MYO9A_MOUSE Myosin-IXa OS=Mus musculus GN=Myo9a PE=2 SV=2    29   9.9  
sp|B2RTY4|MYO9A_HUMAN Myosin-IXa OS=Homo sapiens GN=MYO9A PE=1 SV=1    29   9.9  

>sp|Q14112|NID2_HUMAN Nidogen-2 OS=Homo sapiens GN=NID2 PE=1 SV=2
          Length = 1375

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 28  IKSFQDLTFIGVPGVVGSDDGASWDVTEVLPAASSDLSETDESIRL 165
           +K+   L+ +G+PGV     G++  +  V PAA  DLS    S+ L
Sbjct: 251 VKNLYQLSNLGIPGVWAFHIGSTSPLDNVRPAAVGDLSAAHSSVPL 296


>sp|Q51494|NDOB_PSEAE Naphthalene 1,2-dioxygenase subunit alpha
           OS=Pseudomonas aeruginosa GN=ndoB PE=3 SV=1
          Length = 449

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
 Frame = +2

Query: 95  HGMLLKSFQQPAPTYRKLMSPFAWMCKPAY-----LSVLCHPW---LMMTWIALFQHYQG 250
           HG +   F + AP+ +  M    W  +P +     L ++  P    +   W A  +++ G
Sbjct: 145 HGFIYGCFDEEAPSLKDYMGDAGWYLEPMFKHSGGLELIGPPGKVIIKANWKAPAENFTG 204

Query: 251 SHEHLMWKKSSALIS 295
              H+ W  +S+L S
Sbjct: 205 DAYHVGWTHASSLRS 219


>sp|Q640Z9|LRC14_XENLA Leucine-rich repeat-containing protein 14
           OS=Xenopus laevis GN=lrrc14 PE=2 SV=1
          Length = 509

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
 Frame = +3

Query: 336 WNNRKYLSKACLRVPTKH---IVRVNKRLQHCDIDAIHSS 446
           W+    L+KAC+ V  +H   +++V+KR + C I+A+ +S
Sbjct: 137 WSRTVTLAKACIDVSKRHSEEVMQVSKRRRSCHINALPAS 176


>sp|P36286|POLG_SMSV1 Genome polyprotein OS=San Miguel sea lion
           virus serotype 1 GN=ORF1 PE=3 SV=3
          Length = 1879

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 76  GSDDGA--SWDVTEVLPAASSDLSETDESIRLDVQT 177
           GS DG   SWD  E  PA  S LS TDE +  D  T
Sbjct: 171 GSTDGTIPSWDQIETTPAFLSLLSNTDEEMSADELT 206


>sp|O07824|NDOB_PSEFL Naphthalene 1,2-dioxygenase subunit alpha
           OS=Pseudomonas fluorescens GN=ndoB PE=3 SV=1
          Length = 449

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
 Frame = +2

Query: 95  HGMLLKSFQQPAPTYRKLMSPFAWMCKPAY-----LSVLCHPW---LMMTWIALFQHYQG 250
           HG +   F Q AP+    +   AW  +P +     L ++  P    +   W A  +++ G
Sbjct: 145 HGFIYGCFDQEAPSLMDYLGDAAWYLEPIFKHSGGLELVGPPGKVVIKANWKAPAENFVG 204

Query: 251 SHEHLMWKKSSAL 289
              H+ W  +S+L
Sbjct: 205 DAYHVGWTHASSL 217


>sp|P0A111|NDOB_PSEU8 Naphthalene 1,2-dioxygenase subunit alpha
           OS=Pseudomonas sp. (strain C18) GN=doxB PE=1 SV=1
          Length = 449

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
 Frame = +2

Query: 95  HGMLLKSFQQPAPTYRKLMSPFAWMCKPAY-----LSVLCHPW---LMMTWIALFQHYQG 250
           HG +   F Q AP     +   AW  +P +     L ++  P    +   W A  +++ G
Sbjct: 145 HGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVG 204

Query: 251 SHEHLMWKKSSALIS 295
              H+ W  +S+L S
Sbjct: 205 DAYHVGWTHASSLRS 219


>sp|P0A110|NDOB_PSEPU Naphthalene 1,2-dioxygenase subunit alpha
           OS=Pseudomonas putida GN=ndoB PE=1 SV=1
          Length = 449

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
 Frame = +2

Query: 95  HGMLLKSFQQPAPTYRKLMSPFAWMCKPAY-----LSVLCHPW---LMMTWIALFQHYQG 250
           HG +   F Q AP     +   AW  +P +     L ++  P    +   W A  +++ G
Sbjct: 145 HGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVG 204

Query: 251 SHEHLMWKKSSALIS 295
              H+ W  +S+L S
Sbjct: 205 DAYHVGWTHASSLRS 219


>sp|Q9Z1N3|MYO9A_RAT Myosin-IXa OS=Rattus norvegicus GN=Myo9a PE=1
            SV=1
          Length = 2626

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 89   EHHGMLLKSFQQPAPTYRKLMSPFAWMCKPAYLSVLC 199
            EH+G + K+ Q   PTY +  S   W+   A +  LC
Sbjct: 2064 EHNGHMFKATQYSIPTYCEYCSSLIWIMDRASVCKLC 2100


>sp|Q8C170|MYO9A_MOUSE Myosin-IXa OS=Mus musculus GN=Myo9a PE=2 SV=2
          Length = 2542

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 89   EHHGMLLKSFQQPAPTYRKLMSPFAWMCKPAYLSVLC 199
            EH+G + K+ Q   PTY +  S   W+   A +  LC
Sbjct: 1998 EHNGHIFKATQYSIPTYCEYCSSLIWIMDRASVCKLC 2034


>sp|B2RTY4|MYO9A_HUMAN Myosin-IXa OS=Homo sapiens GN=MYO9A PE=1 SV=1
          Length = 2548

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 89   EHHGMLLKSFQQPAPTYRKLMSPFAWMCKPAYLSVLC 199
            EH+G + K+ Q   PTY +  S   W+   A +  LC
Sbjct: 1996 EHNGHIFKATQYSIPTYCEYCSSLIWIMDRASVCKLC 2032
tr_hit_id B6GV45
Definition tr|B6GV45|B6GV45_9SAUR NADH dehydrogenase subunit 5 OS=Lepidochelys olivacea
Align length 69
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919516|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_A04.
         (489 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6GV45|B6GV45_9SAUR NADH dehydrogenase subunit 5 OS=Lepidoche...    34   4.2  
tr|B4UA96|B4UA96_ANASK Putative uncharacterized protein OS=Anaer...    33   7.1  
tr|A1TL94|A1TL94_ACIAC Adenosine deaminase OS=Acidovorax avenae ...    33   9.3  
tr|B6LLI2|B6LLI2_BRAFL Putative uncharacterized protein OS=Branc...    33   9.3  

>tr|B6GV45|B6GV45_9SAUR NADH dehydrogenase subunit 5 OS=Lepidochelys
           olivacea GN=NADH5 PE=4 SV=1
          Length = 601

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = +2

Query: 77  VQMMEHHGMLLKSFQQPAPTYRKLMSPFAWMCKPAYLSVLCHPWLMMTWIALFQHYQGSH 256
           + M++ H    K + +     +    P  ++  P Y     H   +  WI L++HY  +H
Sbjct: 340 ILMLKLHHSWSKQWTKHPKNKKITQIPTHYLLMPNYRWYGTHKHTIHNWILLWKHYYRNH 399

Query: 257 EHLMWKKSS 283
           +H+M K+ S
Sbjct: 400 KHIMCKRLS 408


>tr|B4UA96|B4UA96_ANASK Putative uncharacterized protein
           OS=Anaeromyxobacter sp. (strain K) GN=AnaeK_0334 PE=3
           SV=1
          Length = 1026

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = +1

Query: 67  GVVGSDDGASWDVTEVLPAASSD 135
           GV GSDDGA+W +T  LP+AS D
Sbjct: 479 GVAGSDDGAAWSLTR-LPSASGD 500


>tr|A1TL94|A1TL94_ACIAC Adenosine deaminase OS=Acidovorax avenae
           subsp. citrulli (strain AAC00-1) GN=Aave_1138 PE=4 SV=1
          Length = 375

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -2

Query: 422 AMLQSFVDSDD--VFGGYPQTSFAQVFSVVPTKADSH 318
           A L + V+SDD   FGGY  T+F ++F  VPT   +H
Sbjct: 302 AGLAATVNSDDPAYFGGYLNTNFVRLFEAVPTLTAAH 338


>tr|B6LLI2|B6LLI2_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_72067 PE=4 SV=1
          Length = 1167

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 200  HPWLMMTWIALFQHYQGSHEHLMWKKSSALISLILMPFQH 319
            HPW+   W A+ Q ++   +H +WKK + +   +     H
Sbjct: 1033 HPWVRNKWPAIEQFFKDGAQHDVWKKKAGIALAVYAQLAH 1072