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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919523
Clone id YMU001_000126_A12
Library
Length 318
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000126_A12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGGAAGAATTCGCCGCCTTTCCTTGTCCATGTTGGGCTCTTGACCAACTGTAGCAGGCG
ACCCTTTGCCAGTAACAGGCTTTGCCAAGTGTGTTGTCTTGGCACCATTGTCACATACCT
TGAGAGTAGTAGACACGGGCCTGGGACTTTTCACATCTGATTCTTCGTTGCGCACTTTCA
CAACTTGCTCGCCAATTTTTGGAAAGCTTTGAGGAGACCATTGCTGCTGAGGTTTGAGCT
CAGGAACAGCCTTAATGGGCATGTTGCACAGAGGAAACTCATCTAGGATTGACGTGCGCA
AAGGGTAGCTCTTGATAA
■■Homology search results ■■ -
sp_hit_id Q8WZ42
Definition sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens
Align length 87
Score (bit) 32.3
E-value 0.75
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919523|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_A12.
         (289 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=2           32   0.75 
sp|Q54IT1|Y7983_DICDI Putative uncharacterized protein DDB_G0288...    31   1.7  
sp|Q3JC88|PRMA_NITOC Ribosomal protein L11 methyltransferase OS=...    31   1.7  
sp|Q7YR40|MDC1_PANTR Mediator of DNA damage checkpoint protein 1...    31   1.7  
sp|Q14676|MDC1_HUMAN Mediator of DNA damage checkpoint protein 1...    30   3.7  
sp|P31956|PAC_ARTVI Penicillin G acylase OS=Arthrobacter viscosu...    30   4.8  
sp|Q06106|MRD1_YEAST Multiple RNA-binding domain-containing prot...    29   6.3  
sp|Q5U2M8|MDC1_RAT Mediator of DNA damage checkpoint protein 1 O...    29   6.3  
sp|Q5TM68|MDC1_MACMU Mediator of DNA damage checkpoint protein 1...    29   6.3  
sp|Q5B1T9|ATG2_EMENI Autophagy-related protein 2 OS=Emericella n...    29   6.3  
sp|P42581|HMX3_MOUSE Homeobox protein HMX3 OS=Mus musculus GN=Hm...    29   8.2  
sp|P12111|CO6A3_HUMAN Collagen alpha-3(VI) chain OS=Homo sapiens...    29   8.3  

>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=2
          Length = 34350

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
 Frame = -3

Query: 266   EFPLCNMPIKAVPELKPQQQWSPQSFPKIGEQVVKVRNEESD---VKSPRPVSTTLKVCD 96
             E P   +P K VPE  P +  SP   P++ E+  +V  EE     V+ P P +       
Sbjct: 11566 EVPKVAVPEKKVPEAIPPKPESPP--PEVFEEPEEVALEEPPAEVVEEPEPAAPP----- 11618

Query: 95    NGAKTTHLAKPVTGKGSPATVGQEPNM 15
                 T    KPV  K +PA V ++P +
Sbjct: 11619 --QVTVPPKKPVPEKKAPAVVAKKPEL 11643


>sp|Q54IT1|Y7983_DICDI Putative uncharacterized protein DDB_G0288537
           OS=Dictyostelium discoideum GN=DDB_G0288537 PE=4 SV=1
          Length = 846

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = -3

Query: 251 NMPIKAVPELKPQQQWSPQSFPKIGEQVVKVRNEESDVKSPRPVSTTLKVCDNGA 87
           N+   A+ +    QQ  PQS  +  +Q  K+ +   ++  P P+S +L +C  G+
Sbjct: 369 NISSNALNQSSSSQQQQPQSTSQQQQQQHKMNSSSGNISPPLPLSISLGLCRGGS 423


>sp|Q3JC88|PRMA_NITOC Ribosomal protein L11 methyltransferase
           OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB
           11848) GN=prmA PE=3 SV=1
          Length = 292

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = -3

Query: 284 RTSILDEFPLCNMPIKAVPELKPQQQWSPQSFPKIGEQVVKVRNEE---SDVKSPRPVST 114
           RT +   FP+ + P   + ELK  Q W+P+SFP    +++  +N E    D   P    +
Sbjct: 53  RTRVNALFPMASDPDTLLQELK--QDWAPESFPSYRWEILADQNWERAWMDHFKPLRFGS 110

Query: 113 TLKVC 99
            L VC
Sbjct: 111 QLWVC 115


>sp|Q7YR40|MDC1_PANTR Mediator of DNA damage checkpoint protein 1
            OS=Pan troglodytes GN=MDC1 PE=3 SV=1
          Length = 2171

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 21/75 (28%), Positives = 30/75 (40%)
 Frame = -3

Query: 242  IKAVPELKPQQQWSPQSFPKIGEQVVKVRNEESDVKSPRPVSTTLKVCDNGAKTTHLAKP 63
            +   PEL+P         P+   QV + R + S VK+P  V  T       A T    +P
Sbjct: 1531 VPTAPELQPSTSTDQPVTPEPTSQVTRGRTDRSSVKTPETVVPTAPELQASASTD---QP 1587

Query: 62   VTGKGSPATVGQEPN 18
            VT + +  T     N
Sbjct: 1588 VTSEPTSRTTRGRKN 1602



 Score = 29.6 bits (65), Expect = 4.8
 Identities = 19/64 (29%), Positives = 27/64 (42%)
 Frame = -3

Query: 242  IKAVPELKPQQQWSPQSFPKIGEQVVKVRNEESDVKSPRPVSTTLKVCDNGAKTTHLAKP 63
            +   PEL+P    +    P+   +  + R   S VK+P PV  T         TT   +P
Sbjct: 1654 VPIAPELQPSTSRNQLVTPEPTSRATRCRTNRSSVKTPEPVVPT---APEPHPTTSTDQP 1710

Query: 62   VTGK 51
            VT K
Sbjct: 1711 VTPK 1714


>sp|Q14676|MDC1_HUMAN Mediator of DNA damage checkpoint protein 1
            OS=Homo sapiens GN=MDC1 PE=1 SV=3
          Length = 2089

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 21/76 (27%), Positives = 28/76 (36%)
 Frame = -3

Query: 242  IKAVPELKPQQQWSPQSFPKIGEQVVKVRNEESDVKSPRPVSTTLKVCDNGAKTTHLAKP 63
            +   PEL+P         PK   +  + R   S VK+P  V  T         T    +P
Sbjct: 1285 VPTAPELRPSTSTDRPVTPKPTSRTTRSRTNMSSVKTPETVVPTAPELQISTSTD---QP 1341

Query: 62   VTGKGSPATVGQEPNM 15
            VT K +  T     NM
Sbjct: 1342 VTPKPTSRTTRSRTNM 1357



 Score = 29.6 bits (65), Expect = 4.8
 Identities = 20/75 (26%), Positives = 29/75 (38%)
 Frame = -3

Query: 242  IKAVPELKPQQQWSPQSFPKIGEQVVKVRNEESDVKSPRPVSTTLKVCDNGAKTTHLAKP 63
            +   PEL+P         P+   Q  + R + S VK+P  V  T       A T    +P
Sbjct: 1449 VPTAPELQPSTSTDQPVTPEPTSQATRGRTDRSSVKTPETVVPTAPELQASASTD---QP 1505

Query: 62   VTGKGSPATVGQEPN 18
            VT + +  T     N
Sbjct: 1506 VTSEPTSRTTRGRKN 1520



 Score = 29.6 bits (65), Expect = 4.8
 Identities = 19/64 (29%), Positives = 27/64 (42%)
 Frame = -3

Query: 242  IKAVPELKPQQQWSPQSFPKIGEQVVKVRNEESDVKSPRPVSTTLKVCDNGAKTTHLAKP 63
            +   PEL+P    +    P+   +  + R   S VK+P PV  T         TT   +P
Sbjct: 1572 VPIAPELQPSTSRNQLVTPEPTSRATRCRTNRSSVKTPEPVVPT---APEPHPTTSTDQP 1628

Query: 62   VTGK 51
            VT K
Sbjct: 1629 VTPK 1632



 Score = 29.3 bits (64), Expect = 6.3
 Identities = 22/78 (28%), Positives = 31/78 (39%)
 Frame = -3

Query: 284  RTSILDEFPLCNMPIKAVPELKPQQQWSPQSFPKIGEQVVKVRNEESDVKSPRPVSTTLK 105
            ++S +  FP  +    A PE  P    +    PK   Q  + R   S VK+P PV  T  
Sbjct: 1111 KSSRMTPFPATS----AAPEPHPSTSTAQPVTPKPTSQATRSRTNRSSVKTPEPVVPTAP 1166

Query: 104  VCDNGAKTTHLAKPVTGK 51
                   T    +PVT +
Sbjct: 1167 ELQPSTSTD---QPVTSE 1181


>sp|P31956|PAC_ARTVI Penicillin G acylase OS=Arthrobacter viscosus
           GN=pac PE=1 SV=1
          Length = 802

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = -3

Query: 245 PIKAVPELKPQQQWSPQSFPKIGEQVVKV-----RNEESDVKSPRPVSTTLKVCDNGA 87
           P   V E KP+++ S QS  K+   V+K      +  E+ V+S   +   LK+  N A
Sbjct: 212 PTSIVSEGKPKRESSSQSLQKLSSAVIKASEKVGKERENFVQSSEELGLPLKIGSNAA 269


>sp|Q06106|MRD1_YEAST Multiple RNA-binding domain-containing protein
           1 OS=Saccharomyces cerevisiae GN=MRD1 PE=1 SV=1
          Length = 887

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -3

Query: 272 LDEFPLCNMPIKAVPELKPQQQWSPQSF 189
           LDEF L NMP+K   ELK +   S Q+F
Sbjct: 429 LDEFDLKNMPLKKQKELKRKAAASRQTF 456


>sp|Q5U2M8|MDC1_RAT Mediator of DNA damage checkpoint protein 1
            OS=Rattus norvegicus GN=Mdc1 PE=2 SV=2
          Length = 1279

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 17/76 (22%), Positives = 28/76 (36%)
 Frame = -3

Query: 230  PELKPQQQWSPQSFPKIGEQVVKVRNEESDVKSPRPVSTTLKVCDNGAKTTHLAKPVTGK 51
            PEL+P         P +  QV + R   + V  P PV T  +     +    +   +  +
Sbjct: 898  PELQPSTSTEQPGIPNLTSQVTEGRAHSTSVNMPEPVLTGPEAQPLTSAEQSVTSNLNPR 957

Query: 50   GSPATVGQEPNMDKER 3
              P T+   P    +R
Sbjct: 958  AQPLTLEPVPQTSHQR 973


>sp|Q5TM68|MDC1_MACMU Mediator of DNA damage checkpoint protein 1
            OS=Macaca mulatta GN=MDC1 PE=3 SV=1
          Length = 2173

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -3

Query: 284  RTSILDEFPLCNMPIKAVPELKPQQQWSPQSFPKIGEQVVKVRNEESDVKSPRPVSTTL 108
            ++S +  FP  +    A PE  P    +    PK   Q  + R   S VK+P PV  T+
Sbjct: 1113 KSSRMTPFPATS----AAPEPHPSTSTAQPVTPKPTSQATRSRTNRSSVKTPEPVVPTV 1167


>sp|Q5B1T9|ATG2_EMENI Autophagy-related protein 2 OS=Emericella
           nidulans GN=atg2 PE=3 SV=1
          Length = 2102

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = -3

Query: 197 QSFPKIGEQVVKVRNEESDVKSPRPVSTTLKVCDNGAKTTHLAKPVTGKGSPATVGQEPN 18
           Q F  IG+     ++ E DV+SP+ +  TL     G       + V GK  P    Q+P+
Sbjct: 760 QGFGDIGQPKTSKKSTERDVQSPQDIDFTL-----GTLCIKFVELVPGKSFPLEEQQDPS 814
tr_hit_id B6Q6Y8
Definition tr|B6Q6Y8|B6Q6Y8_PENMA Putative uncharacterized protein OS=Penicillium marneffei ATCC 18224
Align length 75
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919523|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_A12.
         (289 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6Q6Y8|B6Q6Y8_PENMA Putative uncharacterized protein OS=Penic...    35   2.4  
tr|A7HPD5|A7HPD5_PARL1 Orotidine 5'-phosphate decarboxylase OS=P...    34   4.2  
tr|B4D3T0|B4D3T0_9BACT Spermidine/putrescine ABC transporter,spe...    33   5.5  
tr|Q9WYA9|Q9WYA9_THEMA Pyruvate,orthophosphate dikinase OS=Therm...    33   7.1  
tr|B1L9N1|B1L9N1_THESQ Pyruvate, phosphate dikinase OS=Thermotog...    33   7.1  
tr|B2AL25|B2AL25_PODAN Predicted CDS Pa_5_9720 OS=Podospora anse...    33   7.1  
tr|B0RF96|B0RF96_CLAMS Putative cell division-associated ATP-bin...    33   9.3  

>tr|B6Q6Y8|B6Q6Y8_PENMA Putative uncharacterized protein
           OS=Penicillium marneffei ATCC 18224 GN=PMAA_025330 PE=4
           SV=1
          Length = 260

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = -3

Query: 227 ELKPQQQWSPQSFPKIGEQVVKVRNEESDVKSPRPVSTTLKVCDNGAKTTHLAKPVTGKG 48
           +LK  Q W+     ++ E   K  N++SD K+P+P        DNGA TT      T K 
Sbjct: 130 QLKLAQTWTRNEADEVDENESKETNDQSDSKTPKPSGVP---HDNGAATTTTDGTATYKA 186

Query: 47  SPATVGQEPNMDKER 3
             A   ++    ++R
Sbjct: 187 LEAETEKDLQQARKR 201


>tr|A7HPD5|A7HPD5_PARL1 Orotidine 5'-phosphate decarboxylase
           OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023
           / NCIMB 13966) GN=Plav_0145 PE=3 SV=1
          Length = 233

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 161 VRNEESDVKSPRPVSTTLKVCDNGAKTTHLAKPVTGKGSPATVGQEPN 18
           +R E+SDV   + V T  +   +GA    + +P+TG G P     E N
Sbjct: 181 IRPEKSDVGDQKRVMTPSQALASGADVLVIGRPITGAGDPRAAADEIN 228


>tr|B4D3T0|B4D3T0_9BACT Spermidine/putrescine ABC
           transporter,spermidine/putrescine-binding protein
           OS=Chthoniobacter flavus Ellin428 GN=CfE428DRAFT_3568
           PE=4 SV=1
          Length = 66

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = -3

Query: 275 ILDEFPLCNMPIKAVPELKPQQQWSPQSFPKIGEQVVKVRNEESDVKS 132
           I  E+P  N  + A   L P+Q  +P S+P + E+++ +RN  +D K+
Sbjct: 5   ISKEYPYTNPNLAARKLLTPEQLANPASYPHLDERLLPLRNVGNDTKA 52


>tr|Q9WYA9|Q9WYA9_THEMA Pyruvate,orthophosphate dikinase
           OS=Thermotoga maritima GN=TM_0272 PE=4 SV=1
          Length = 881

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 20/54 (37%), Positives = 24/54 (44%)
 Frame = -3

Query: 185 KIGEQVVKVRNEESDVKSPRPVSTTLKVCDNGAKTTHLAKPVTGKGSPATVGQE 24
           K GEQV+ VR E S        +    +   G  T+H A    G G PA VG E
Sbjct: 424 KAGEQVILVRPETSPEDVGGMAAAQGILTSRGGMTSHAAVVARGMGKPAVVGAE 477


>tr|B1L9N1|B1L9N1_THESQ Pyruvate, phosphate dikinase OS=Thermotoga
           sp. (strain RQ2) GN=TRQ2_0676 PE=4 SV=1
          Length = 881

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 20/54 (37%), Positives = 24/54 (44%)
 Frame = -3

Query: 185 KIGEQVVKVRNEESDVKSPRPVSTTLKVCDNGAKTTHLAKPVTGKGSPATVGQE 24
           K GEQV+ VR E S        +    +   G  T+H A    G G PA VG E
Sbjct: 424 KAGEQVILVRPETSPEDVGGMAAAQGILTSRGGMTSHAAVVARGMGKPAVVGAE 477


>tr|B2AL25|B2AL25_PODAN Predicted CDS Pa_5_9720 OS=Podospora
           anserina PE=4 SV=1
          Length = 1275

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 17/46 (36%), Positives = 29/46 (63%)
 Frame = -3

Query: 242 IKAVPELKPQQQWSPQSFPKIGEQVVKVRNEESDVKSPRPVSTTLK 105
           +KA PE + +++ +P+S  +  EQV+K   EES+V    PV+  L+
Sbjct: 416 LKAAPESEGEEEGAPESEAE-EEQVLKAEEEESEVDDEEPVNDPLE 460


>tr|B0RF96|B0RF96_CLAMS Putative cell division-associated
           ATP-binding ABC transport protein OS=Clavibacter
           michiganensis subsp. sepedonicus (strain ATCC 33113 /
           JCM 9667) GN=ftsE PE=3 SV=1
          Length = 538

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 24/75 (32%), Positives = 32/75 (42%)
 Frame = -3

Query: 227 ELKPQQQWSPQSFPKIGEQVVKVRNEESDVKSPRPVSTTLKVCDNGAKTTHLAKPVTGKG 48
           EL  Q Q S    P+  E  V V  E   V +P PV          A+ T  A+P TG  
Sbjct: 211 ELGGQYQTSAIDLPRTAENPVGVNPEHPPVAAPTPVFVPAAPLPAPARPTASAEPATG-- 268

Query: 47  SPATVGQEPNMDKER 3
             A   ++  +DK+R
Sbjct: 269 --AERREQAKLDKQR 281