BP919525
Clone id YMU001_000126_B03
Library
Length 474
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000126_B03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GTCATTGCTACGGGGCTTGCTGTTGTTGGTGGGGCATTCCTAGCACAGTATATTTCAGAG
AAAATGGTCAGCTATATTGGTGGGTTTCTGTTTCTGGCTTTTGCTGCCGCAACTCTTCTC
GGAGTTTTTTAAAATTTTGTAGACTGCCTGTCCATCAATCCTCACGCTTGGTTATGGTGT
CCGATTTTCTTTTTGAGCTTTCAAATGGAGAGCAAAGACAGAATGCATCTAAGCAGCACG
TGTTACCTTAATTGACCAACCCATTGACGATTGATTAATCCTCGAATTCAAATCAATTTG
ATGGAATGTTGGAGAAAACAGGAGATCCGCTGTCCTTAAGCCAAAATTTTTAAACACACC
CTTGTATTATTTAGAATTCATCAGTATTTATATGTAACATGTGACAACTGCAAAGAGAAA
TCGATAGAAAGGCATTGAGGCTCTATTTTTCAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q70EL3
Definition sp|Q70EL3|UBP50_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 50 OS=Homo sapiens
Align length 22
Score (bit) 30.4
E-value 3.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919525|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_B03.
(451 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q70EL3|UBP50_HUMAN Inactive ubiquitin carboxyl-terminal hydro... 30 3.7
sp|Q03ZQ0|POTA_LEUMM Spermidine/putrescine import ATP-binding pr... 30 6.1

>sp|Q70EL3|UBP50_HUMAN Inactive ubiquitin carboxyl-terminal
hydrolase 50 OS=Homo sapiens GN=USP50 PE=2 SV=1
Length = 339

Score = 30.4 bits (67), Expect = 3.7
Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Frame = -1

Query: 268 VNGLVN*GNTCCLDAF--CLCS 209
V GL N GNTCC++A CLCS
Sbjct: 43 VTGLWNLGNTCCVNAISQCLCS 64


>sp|Q03ZQ0|POTA_LEUMM Spermidine/putrescine import ATP-binding
protein potA OS=Leuconostoc mesenteroides subsp.
mesenteroides (strain ATCC 8293 / NCDO 523) GN=potA PE=3
SV=1
Length = 368

Score = 29.6 bits (65), Expect = 6.1
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +3

Query: 153 HQSSRLVMVSDFLFELSNGEQRQNASKQHVLP*LTNPLTID*SSNSNQFDGMLEK 317
H + +SD++F +++G +QN S + + N D SN DG++++
Sbjct: 197 HDQEEALAMSDWIFVMNDGVIQQNGSPEDIYDEPINHFVADFIGESNIVDGIMKE 251


tr_hit_id A9SX91
Definition tr|A9SX91|A9SX91_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 24
Score (bit) 42.7
E-value 0.009
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919525|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_B03.
(451 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9SX91|A9SX91_PHYPA Predicted protein (Fragment) OS=Physcomit... 43 0.009
tr|B8C5Q1|B8C5Q1_THAPS Uncharacterized protein (Fragment) OS=Tha... 41 0.034
tr|A9NN11|A9NN11_PICSI Putative uncharacterized protein OS=Picea... 40 0.076
tr|A9RQG2|A9RQG2_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.17
tr|A7NXR9|A7NXR9_VITVI Chromosome chr5 scaffold_2, whole genome ... 39 0.17
tr|Q2R2Z4|Q2R2Z4_ORYSJ Os11g0544500 protein OS=Oryza sativa subs... 38 0.22
tr|B8BKY2|B8BKY2_ORYSI Putative uncharacterized protein OS=Oryza... 38 0.22
tr|A9U355|A9U355_PHYPA Predicted protein (Fragment) OS=Physcomit... 37 0.38
tr|A8I8C6|A8I8C6_CHLRE Predicted protein OS=Chlamydomonas reinha... 37 0.49
tr|A3CC48|A3CC48_ORYSJ Putative uncharacterized protein OS=Oryza... 37 0.49
tr|Q9T0H9|Q9T0H9_ARATH Putative uncharacterized protein T6G15.14... 37 0.65
tr|B6TEV6|B6TEV6_MAIZE Putative uncharacterized protein OS=Zea m... 36 0.84
tr|B4FQE9|B4FQE9_MAIZE Putative uncharacterized protein OS=Zea m... 36 0.84
tr|A8J8M8|A8J8M8_CHLRE Predicted protein (Fragment) OS=Chlamydom... 33 5.5

>tr|A9SX91|A9SX91_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_136778 PE=4 SV=1
Length = 231

Score = 42.7 bits (99), Expect = 0.009
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +1

Query: 1 VIATGLAVVGGAFLAQYISEKMVS 72
VIAT LAV+GGAFLAQYISEK+VS
Sbjct: 190 VIATALAVLGGAFLAQYISEKVVS 213


>tr|B8C5Q1|B8C5Q1_THAPS Uncharacterized protein (Fragment)
OS=Thalassiosira pseudonana CCMP1335 GN=THAPSDRAFT_18109
PE=4 SV=1
Length = 208

Score = 40.8 bits (94), Expect = 0.034
Identities = 15/25 (60%), Positives = 24/25 (96%)
Frame = +1

Query: 4 IATGLAVVGGAFLAQYISEKMVSYI 78
+ATG+AVVGGA++++Y+SEK++ YI
Sbjct: 168 VATGIAVVGGAYISKYVSEKVIGYI 192


>tr|A9NN11|A9NN11_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 357

Score = 39.7 bits (91), Expect = 0.076
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +1

Query: 1 VIATGLAVVGGAFLAQYISEKMVSYI 78
V AT +AVVGG LAQYISEK+V Y+
Sbjct: 315 VAATSIAVVGGGLLAQYISEKLVGYL 340


>tr|A9RQG2|A9RQG2_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_117920 PE=4 SV=1
Length = 257

Score = 38.5 bits (88), Expect = 0.17
Identities = 14/24 (58%), Positives = 23/24 (95%)
Frame = +1

Query: 4 IATGLAVVGGAFLAQYISEKMVSY 75
+AT LAV+GG+FL++Y+SEK+++Y
Sbjct: 215 VATALAVLGGSFLSEYVSEKLIAY 238


>tr|A7NXR9|A7NXR9_VITVI Chromosome chr5 scaffold_2, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00020447001
PE=4 SV=1
Length = 354

Score = 38.5 bits (88), Expect = 0.17
Identities = 16/26 (61%), Positives = 22/26 (84%)
Frame = +1

Query: 1 VIATGLAVVGGAFLAQYISEKMVSYI 78
+ AT +A++GGAFLA YISEK+V Y+
Sbjct: 312 LFATTIAILGGAFLANYISEKLVGYL 337


>tr|Q2R2Z4|Q2R2Z4_ORYSJ Os11g0544500 protein OS=Oryza sativa subsp.
japonica GN=Os11g0544500 PE=2 SV=1
Length = 347

Score = 38.1 bits (87), Expect = 0.22
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +1

Query: 1 VIATGLAVVGGAFLAQYISEKMVSYI 78
++AT LA+VGGAFLA Y+SEK+V I
Sbjct: 305 LVATFLAIVGGAFLANYLSEKLVGLI 330


>tr|B8BKY2|B8BKY2_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_36409 PE=4 SV=1
Length = 314

Score = 38.1 bits (87), Expect = 0.22
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +1

Query: 1 VIATGLAVVGGAFLAQYISEKMVSYI 78
++AT LA+VGGAFLA Y+SEK+V I
Sbjct: 272 LVATFLAIVGGAFLANYLSEKLVGLI 297


>tr|A9U355|A9U355_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_4995 PE=4 SV=1
Length = 222

Score = 37.4 bits (85), Expect = 0.38
Identities = 14/25 (56%), Positives = 23/25 (92%)
Frame = +1

Query: 4 IATGLAVVGGAFLAQYISEKMVSYI 78
+AT LAV+GG FL++Y+SEK+++Y+
Sbjct: 181 VATILAVLGGRFLSEYVSEKLIAYV 205


>tr|A8I8C6|A8I8C6_CHLRE Predicted protein OS=Chlamydomonas
reinhardtii GN=CGLD1 PE=4 SV=1
Length = 340

Score = 37.0 bits (84), Expect = 0.49
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1

Query: 4 IATGLAVVGGAFLAQYISEKMVSYI 78
+ATGLAV GG FL++Y SE+++ YI
Sbjct: 298 VATGLAVAGGGFLSRYFSEQVLQYI 322


>tr|A3CC48|A3CC48_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_032870 PE=4 SV=1
Length = 165

Score = 37.0 bits (84), Expect = 0.49
Identities = 16/23 (69%), Positives = 21/23 (91%)
Frame = +1

Query: 1 VIATGLAVVGGAFLAQYISEKMV 69
++AT LA+VGGAFLA Y+SEK+V
Sbjct: 128 LVATFLAIVGGAFLANYLSEKLV 150