BP919527 |
Clone id |
YMU001_000126_B05 |
Library |
YMU01 |
Length |
527 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000126_B05. |
Accession |
BP919527 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL235Contig1 |
Sequence |
TTGTTTTGCAGGCAACACAGCACTGACTGCATACTATAAATTCATAGATACAAAACCACC TGTACATACATCAGGTGTAGGCCGATGCAGCTTACAATGAGACTTGCCTCATCTCTTTCC TAAGGGCATTTGCTCTAACAAGGCTACCAATGGTGTTAAAAGCAAGTTTGAGATCATCCA GCGGGTTTCCAGGCACAACAGTCTTGTAGAGATAACTATCGAAAGTCATCTTCTGCACAT ACTCATCTGCACAAAGCTCAACGAAGGCTTCTCGAGCTGGGTTAGATCGGTAAAACAGCT TTTGAAGAATATCCAAGACCTTGTAAGTAGGCCAATAGGTCTTGTCCCACTTCTCCAAAT ATACTCGCAGATGAGACTCACCAATCATCCGTGTACCGCGTGCAGAGCCCTCGACAATAG CCTCTGCACACATGCGACCTGATTTTGCTGCAAAGTATATGCCCTCACCAGAGCATTTTG TCACATACCCTGCTGCATCGCCTACCAATGCAGCTCTGTCCTTCACC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q55087 |
Definition |
sp|Q55087|CHLP_SYNY3 Geranylgeranyl hydrogenase OS=Synechocystis sp. (strain PCC 6803) |
Align length |
135 |
Score (bit) |
174.0 |
E-value |
3.0e-43 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919527|Adiantum capillus-veneris mRNA, clone: YMU001_000126_B05. (527 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q55087|CHLP_SYNY3 Geranylgeranyl hydrogenase OS=Synechocystis... 174 3e-43 sp|P26172|BCHP_RHOCA Geranylgeranyl hydrogenase OS=Rhodobacter c... 84 3e-16 sp|Q58915|Y1520_METJA Uncharacterized protein MJ1520 OS=Methanoc... 44 6e-04 sp|A6UWL1|GGR_META3 Digeranylgeranylglycerophospholipid reductas... 42 0.002 sp|P94132|ETFD_ACIAD Probable electron transfer flavoprotein-ubi... 42 0.002 sp|A9A6R1|GGR_METM6 Digeranylgeranylglycerophospholipid reductas... 42 0.002 sp|P96800|Y1602_METBF Uncharacterized protein Mbar_A1602 OS=Meth... 40 0.005 sp|A6VJ23|GGR_METM7 Digeranylgeranylglycerophospholipid reductas... 40 0.005 sp|Q9V2B0|GGR_PYRAB Digeranylgeranylglycerophospholipid reductas... 39 0.012 sp|Q6M083|GGR_METMP Digeranylgeranylglycerophospholipid reductas... 39 0.012 sp|A7I9P9|GGR_METB6 Digeranylgeranylglycerophospholipid reductas... 39 0.015 sp|Q2NER9|GGR3_METST Digeranylgeranylglycerophospholipid reducta... 39 0.020 sp|Q2FUA4|GGR_METHJ Digeranylgeranylglycerophospholipid reductas... 38 0.034 sp|Q8TUV8|GGR2_METKA Digeranylgeranylglycerophospholipid reducta... 38 0.034 sp|A6US00|GGR_METVS Digeranylgeranylglycerophospholipid reductas... 37 0.058 sp|A4FZB4|GGR_METM5 Digeranylgeranylglycerophospholipid reductas... 37 0.076 sp|Q8U4J0|GGR_PYRFU Digeranylgeranylglycerophospholipid reductas... 36 0.099 sp|Q8TVE9|GGR1_METKA Digeranylgeranylglycerophospholipid reducta... 35 0.29 sp|O26377|GGR1_METTH Digeranylgeranylglycerophospholipid reducta... 34 0.38 sp|Q9VMQ5|COQ6_DROME Putative ubiquinone biosynthesis monooxygen... 34 0.38 sp|Q57952|GGR_METJA Digeranylgeranylglycerophospholipid reductas... 34 0.49 sp|O27753|GGR2_METTH Digeranylgeranylglycerophospholipid reducta... 34 0.49 sp|P72835|Y1300_SYNY3 Uncharacterized protein slr1300 OS=Synecho... 33 0.64 sp|Q98880|ACHA_DANRE Acetylcholine receptor subunit alpha OS=Dan... 33 0.64 sp|Q2NFF7|GGR2_METST Digeranylgeranylglycerophospholipid reducta... 33 0.84 sp|O01884|COQ6_CAEEL Probable ubiquinone biosynthesis monooxygen... 33 0.84 sp|A8A6F0|CBRA_ECOHS Protein cbrA OS=Escherichia coli O9:H4 (str... 33 0.84 sp|Q329C3|CBRA_SHIDS Protein cbrA OS=Shigella dysenteriae seroty... 32 1.4 sp|Q1R4P6|CBRA_ECOUT Protein cbrA OS=Escherichia coli (strain UT... 32 1.4 sp|Q8CVK0|CBRA_ECOL6 Protein cbrA OS=Escherichia coli O6 GN=cbrA... 32 1.4
>sp|Q55087|CHLP_SYNY3 Geranylgeranyl hydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=chlP PE=3 SV=1 Length = 407
Score = 174 bits (440), Expect = 3e-43 Identities = 88/135 (65%), Positives = 104/135 (77%) Frame = -2
Query: 526 VKDRAALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSARGTRMIGESHLRVYLEKW 347 V R ALVGDAAG VTK SGEGIYFAAKS RMCAE IV S G R+ E+ L+ Y+++W Sbjct: 271 VVGRVALVGDAAGTVTKSSGEGIYFAAKSARMCAETIVATSNNGQRVPTEADLKQYIKQW 330
Query: 346 DKTYWPTYKVLDILQKLFYRSNPAREAFVELCADEYVQKMTFDSYLYKTVVPGNPLDDLK 167 DK Y TY VLDILQ++FYR++ REAFVE+C+D VQK+TFDSYLYKTVVP NPL +K Sbjct: 331 DKRYGATYLVLDILQRVFYRTDATREAFVEMCSDIDVQKLTFDSYLYKTVVPANPLVQMK 390
Query: 166 LAFNTIGSLVRANAL 122 + TIGSL+R NAL Sbjct: 391 ITAKTIGSLLRGNAL 405
>sp|P26172|BCHP_RHOCA Geranylgeranyl hydrogenase OS=Rhodobacter capsulatus GN=bchP PE=3 SV=1 Length = 391
Score = 84.3 bits (207), Expect = 3e-16 Identities = 49/123 (39%), Positives = 68/123 (55%) Frame = -2
Query: 508 LVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSARGTRMIGESHLRVYLEKWDKTYWP 329 L GDAAG V SGEGIY+A GR AEA + G + L++ + K + Sbjct: 264 LSGDAAGVVAPSSGEGIYYAHAGGRYAAEAAMAFLKSGK----PADLKLARAGFMKEHGT 319
Query: 328 TYKVLDILQKLFYRSNPAREAFVELCADEYVQKMTFDSYLYKTVVPGNPLDDLKLAFNTI 149 +KVL ++Q +Y S+ RE FV LC D VQ+MTF+SY+ K + PL +LK+ F + Sbjct: 320 VFKVLRMMQDKYYHSDDRRERFVSLCHDVDVQRMTFESYMNKKMTKFQPLKNLKIGFKNL 379
Query: 148 GSL 140 L Sbjct: 380 AHL 382
>sp|Q58915|Y1520_METJA Uncharacterized protein MJ1520 OS=Methanocaldococcus jannaschii GN=MJ1520 PE=3 SV=1 Length = 387
Score = 43.5 bits (101), Expect = 6e-04 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 2/81 (2%) Frame = -2
Query: 523 KDRAALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSARGTRMIGE--SHLRVYLEK 350 KD LVGDAA +V SG G+YF A G++ E I ++ + E +L +Y ++ Sbjct: 259 KDNVLLVGDAACHVKPLSGGGLYFGAMGGKIAGEVI-------SKYLNEDIENLELYDKR 311
Query: 349 WDKTYWPTYKVLDILQKLFYR 287 W +T+ K ++KLF + Sbjct: 312 WKETFGSEIKNGLRVRKLFLK 332
>sp|A6UWL1|GGR_META3 Digeranylgeranylglycerophospholipid reductase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_1307 PE=3 SV=1 Length = 391
Score = 42.0 bits (97), Expect = 0.002 Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 5/107 (4%) Frame = -2
Query: 526 VKDRAALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSARGTRMIGESHLRVYLEKW 347 V D +VGDAAG ++ SG GIY + G + + V G A + E +L Y +W Sbjct: 270 VADNFMVVGDAAGQISPISGGGIYLSLSCGSIAGK--VAGEAIKSNNCSEDYLVEYENRW 327
Query: 346 DKTYW----PTYKVLDILQKLFYRS-NPAREAFVELCADEYVQKMTF 221 + Y+ K +LQK + N +A E + V K+ F Sbjct: 328 KEKYYKLLMDELKYKKVLQKFSEKELNALADAMDERLEEIDVAKIAF 374
>sp|P94132|ETFD_ACIAD Probable electron transfer flavoprotein-ubiquinone oxidoreductase OS=Acinetobacter sp. (strain ADP1) GN=etfD PE=4 SV=1 Length = 570
Score = 42.0 bits (97), Expect = 0.002 Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 35/167 (20%) Frame = -2
Query: 508 LVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSARGTRMIG--------------ESH 371 L+GD AG++ +G + A KSG +C EA+ E ARG G + Sbjct: 328 LIGDDAGFLNFAKIKGSHTAMKSGMLCGEAVFEAIARGVDKGGDLAIARVVEGEDLFDKE 387
Query: 370 LRVYLEKWDKTYWPTYKVLDILQKLFYRS---NPAREAF------VELCADEYVQKMTFD 218 L Y +K+DK++ L++ +RS PA F D+ + K+ F Sbjct: 388 LTTYTQKFDKSW---------LKEELHRSRNFGPAMHKFGLWIGGAFNFVDQNIFKVPFT 438
Query: 217 SYLYK------------TVVPGNPLDDLKLAFNTIGSLVRANALRKE 113 + + T P P D KL F+ + S+ +N + +E Sbjct: 439 LHDLQPDYSALKTQDQATFKPNYPKPDGKLTFDRLSSVFVSNTVHEE 485
>sp|A9A6R1|GGR_METM6 Digeranylgeranylglycerophospholipid reductase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=MmarC6_0522 PE=3 SV=1 Length = 390
Score = 41.6 bits (96), Expect = 0.002 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 4/81 (4%) Frame = -2
Query: 526 VKDRAALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSARGTRMIGESHLRVYLEKW 347 V D +VGDAAG+V+ +G GI + G M E E + E L +Y ++W Sbjct: 269 VADNIMVVGDAAGHVSPLTGGGIGLSMACGVMAGEVAAESTK--AEDYSEEFLNLYEKRW 326
Query: 346 DKTYW-PTYKVL---DILQKL 296 + Y+ P K L +ILQKL Sbjct: 327 KERYYKPLMKDLKYKNILQKL 347
>sp|P96800|Y1602_METBF Uncharacterized protein Mbar_A1602 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=Mbar_A1602 PE=3 SV=2 Length = 387
Score = 40.4 bits (93), Expect = 0.005 Identities = 19/31 (61%), Positives = 23/31 (74%) Frame = -2
Query: 508 LVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI 416 LVGDAAG+ +GEGIY+A KSG + AE I Sbjct: 263 LVGDAAGFGEYWTGEGIYYAVKSGTIAAEVI 293
>sp|A6VJ23|GGR_METM7 Digeranylgeranylglycerophospholipid reductase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_1386 PE=3 SV=1 Length = 390
Score = 40.4 bits (93), Expect = 0.005 Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 4/81 (4%) Frame = -2
Query: 526 VKDRAALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSARGTRMIGESHLRVYLEKW 347 V D +VGDAAG+V+ +G GI + G M E V + E L +Y ++W Sbjct: 269 VDDNIIVVGDAAGHVSPLTGGGIGLSMDCGLMAGE--VAAQSIKAENYSEEFLSLYEKRW 326
Query: 346 -DKTYWPTYKVL---DILQKL 296 +K Y P K L +ILQKL Sbjct: 327 KEKYYKPLMKDLKYKNILQKL 347
>sp|Q9V2B0|GGR_PYRAB Digeranylgeranylglycerophospholipid reductase OS=Pyrococcus abyssi GN=PYRAB01640 PE=3 SV=1 Length = 393
Score = 39.3 bits (90), Expect = 0.012 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 1/107 (0%) Frame = -2
Query: 526 VKDRAALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSARGTRMIGESHLRVYLEKW 347 VKD +VGDAA V G G+ A K+ + A+ I++ + L+ Y E+W Sbjct: 265 VKDNVLVVGDAARQVNPVHGGGMKEAMKAASIAAKWIIKALEEENLEL----LKNYSEEW 320
Query: 346 DKTYWPTYKVLDILQKLFYR-SNPAREAFVELCADEYVQKMTFDSYL 209 +T P + L L+K + ++ + FV+L + ++K+ +YL Sbjct: 321 WRTEGPRMEKLLKLRKAMEKLTDEDLDVFVQLVSGTDLEKLAGGNYL 367
>sp|Q6M083|GGR_METMP Digeranylgeranylglycerophospholipid reductase OS=Methanococcus maripaludis GN=MMP0388 PE=3 SV=1 Length = 390
Score = 39.3 bits (90), Expect = 0.012 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 4/81 (4%) Frame = -2
Query: 526 VKDRAALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSARGTRMIGESHLRVYLEKW 347 V D +VGDAAG+V+ +G GI + G M + V + E L +Y +KW Sbjct: 269 VADNIMVVGDAAGHVSPLTGGGIGLSMDCGLMAGD--VAAQSIKAENYSEEFLDLYEKKW 326
Query: 346 DKTYWP----TYKVLDILQKL 296 + Y+ K +ILQKL Sbjct: 327 KEKYYKLLMNDLKYKNILQKL 347
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B7X936 |
Definition |
tr|B7X936|B7X936_HEVBR Geranylgeranyl reductase OS=Hevea brasiliensis |
Align length |
144 |
Score (bit) |
262.0 |
E-value |
9.0e-69 |
Report |
|