BP919533 |
Clone id |
YMU001_000126_B12 |
Library |
YMU01 |
Length |
446 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000126_B12. |
Accession |
BP919533 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL6Contig1 |
Sequence |
ACAAGGAGCTACACTTTTTCATTCTCATGACTGTCAGAATATACAAGGCAATAGGTGAGA CATGGAAGACGCATAGTGTGTCAGAATTCAGGATTCACCTCATTAACATACAAAAGCAAT CATTGAGCAAGGGCACTGGTGTTGTACACTAAGAGGGCACCACCCAACAAGATAGCGCCG AGGGTAACTGCCCAGATAGCCAATCCAGTAGGACCTGCAGCATAGCTATCACCAGAAGTT GACCATTCCTCTGGGACATAGATAGGGCTGTATCCATCGACATTAGCACCATACTTCTTG GTATATTGGTAGACTCCCTTTCCCTTAGCTTTGCGACCAGAGGCATCCAGGTTACCCTTG AATTTGGTATCGCCGGAAGGTCCCAAGGGAGTTCTGGTCGAGATCTTCTTGACACCACTT GCCTCGATTCTGAGGGAGCGGGCGGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P06183 |
Definition |
sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum |
Align length |
108 |
Score (bit) |
130.0 |
E-value |
2.0e-30 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919533|Adiantum capillus-veneris mRNA, clone: YMU001_000126_B12. (446 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl... 130 2e-30 sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl... 130 2e-30 sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl... 129 6e-30 sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl... 127 3e-29 sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl... 126 4e-29 sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl... 125 6e-29 sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl... 125 8e-29 sp|Q12NC2|THIC_SHEDO Thiamine biosynthesis protein thiC OS=Shewa... 30 6.0 sp|Q9Z1J1|TF7L1_MOUSE Transcription factor 7-like 1 OS=Mus muscu... 30 6.0 sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal tr... 30 6.0 sp|Q9WU01|KHDR2_MOUSE KH domain-containing, RNA-binding, signal ... 30 6.0 sp|A1RIA0|AROC_SHESW Chorismate synthase OS=Shewanella sp. (stra... 30 6.0 sp|Q0HWM5|AROC_SHESR Chorismate synthase OS=Shewanella sp. (stra... 30 6.0 sp|Q0HKC3|AROC_SHESM Chorismate synthase OS=Shewanella sp. (stra... 30 6.0 sp|A0KV84|AROC_SHESA Chorismate synthase OS=Shewanella sp. (stra... 30 6.0 sp|A4Y889|AROC_SHEPC Chorismate synthase OS=Shewanella putrefaci... 30 6.0 sp|A9KTV7|AROC_SHEB9 Chorismate synthase OS=Shewanella baltica (... 30 6.0 sp|A6WQ14|AROC_SHEB8 Chorismate synthase OS=Shewanella baltica (... 30 6.0 sp|A3D676|AROC_SHEB5 Chorismate synthase OS=Shewanella baltica (... 30 6.0
>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1 Length = 138
Score = 130 bits (327), Expect = 2e-30 Identities = 66/108 (61%), Positives = 74/108 (68%) Frame = -1
Query: 446 SARSLRIEASGVKKISTRTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYS 267 S+ S ++ ASGVKK+ T P G +G + +DASGRK KGKGVYQY KYGANVDGYS Sbjct: 31 SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYS 90
Query: 266 PIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYNTSALAQ 123 PIY +EWS SGD Y G TGLAIWAVT LVYNTSALAQ Sbjct: 91 PIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138
>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1 Length = 138
Score = 130 bits (327), Expect = 2e-30 Identities = 66/108 (61%), Positives = 74/108 (68%) Frame = -1
Query: 446 SARSLRIEASGVKKISTRTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYS 267 S+ S ++ ASGVKK+ T P G +G + +DASGRK KGKGVYQY KYGANVDGYS Sbjct: 31 SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYS 90
Query: 266 PIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYNTSALAQ 123 PIY +EWS SGD Y G TGLAIWAVT LVYNTSALAQ Sbjct: 91 PIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138
>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1 Length = 136
Score = 129 bits (324), Expect = 6e-30 Identities = 64/108 (59%), Positives = 75/108 (69%) Frame = -1
Query: 446 SARSLRIEASGVKKISTRTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYS 267 S+ S R++ASGVKK+ T P G +G + +DASGRK KGKGVYQ+ KYGANVDGYS Sbjct: 29 SSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYS 88
Query: 266 PIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYNTSALAQ 123 PIY ++WS SGD Y G TGLAIWAVT LV+NTSALAQ Sbjct: 89 PIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136
>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1 Length = 141
Score = 127 bits (318), Expect = 3e-29 Identities = 66/108 (61%), Positives = 72/108 (66%) Frame = -1
Query: 446 SARSLRIEASGVKKISTRTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYS 267 S S RI ASGVKKI T P G +G + +DASGRK KG GVY++ KYGANVDGYS Sbjct: 34 SPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYS 93
Query: 266 PIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYNTSALAQ 123 PIY +EWS SGD Y G TGLAIWAVT LVYNTSALAQ Sbjct: 94 PIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141
>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1 Length = 138
Score = 126 bits (317), Expect = 4e-29 Identities = 67/108 (62%), Positives = 72/108 (66%), Gaps = 1/108 (0%) Frame = -1
Query: 446 SAR-SLRIEASGVKKISTRTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGY 270 SAR SL I A KK+ T P GP G FK +DASGR AKGKGVYQ+ KYGANVDGY Sbjct: 30 SARPSLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGY 89
Query: 269 SPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYNTSALA 126 SPIY PEEWS SGD Y G TGL +WAVT LVY+TSALA Sbjct: 90 SPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137
>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1 Length = 140
Score = 125 bits (315), Expect = 6e-29 Identities = 64/108 (59%), Positives = 72/108 (66%) Frame = -1
Query: 446 SARSLRIEASGVKKISTRTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYS 267 S+ S + ASGVKKI PLG G K + +D+SGRK GKGVYQ+ KYGANVDGYS Sbjct: 33 SSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYS 92
Query: 266 PIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYNTSALAQ 123 PIY EEW+ +GD YA G TGL IWAVT LVYNTSALAQ Sbjct: 93 PIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140
>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1 Length = 140
Score = 125 bits (314), Expect = 8e-29 Identities = 65/105 (61%), Positives = 70/105 (66%) Frame = -1
Query: 437 SLRIEASGVKKISTRTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYSPIY 258 S +I ASGVKKI T P G +G + +DASGRK KG GVY+Y KYGANVDGYSPIY Sbjct: 36 SFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIY 95
Query: 257 VPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYNTSALAQ 123 EWS SGD Y G TGLAIWAVT LVYNTSALAQ Sbjct: 96 NENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140
>sp|Q12NC2|THIC_SHEDO Thiamine biosynthesis protein thiC OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=thiC PE=3 SV=1 Length = 686
Score = 29.6 bits (65), Expect = 6.0 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +2
Query: 2 QGATLFHSHDCQNIQGNR*DMEDA*CVRI 88 QG+ L+HS D I N+ D +DA VR+ Sbjct: 651 QGSALYHSIDSSGINDNKNDQQDASVVRV 679
>sp|Q9Z1J1|TF7L1_MOUSE Transcription factor 7-like 1 OS=Mus musculus GN=Tcf7l1 PE=1 SV=2 Length = 584
Score = 29.6 bits (65), Expect = 6.0 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +1
Query: 202 NPVGPAA*LSPEVDHSSGT*IGLYPSTLAPYF 297 +P P LSPE+D +G +PS L+PY+ Sbjct: 200 SPASPPTHLSPEIDPKTGIPRPPHPSELSPYY 231
>sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Rattus norvegicus GN=Khdrbs2 PE=1 SV=1 Length = 349
Score = 29.6 bits (65), Expect = 6.0 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = -1
Query: 305 YTKKYGANVDGYSPIYVPEEWSTSGDSYAAGP 210 Y +G N D Y Y PEEW+T+ S A P Sbjct: 303 YDYGHGVNEDAYDS-YAPEEWTTTRSSLKAPP 333
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A4ZGB4 |
Definition |
tr|A4ZGB4|A4ZGB4_AGATE Chloroplast photosystem II 10 kDa protein OS=Agave tequilana |
Align length |
108 |
Score (bit) |
137.0 |
E-value |
2.0e-31 |
Report |
|