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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919536
Clone id YMU001_000126_C03
Library
Length 457
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000126_C03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGGAGCTGCAGGCCAACAAGAAGGATCTGGTTTTCTGTTACATCATCCTTCGGACAGTTA
TACGACACATCCAACAAATCTTTCTTCACTGGAATAATACCATCTAAATCCCTCTCTTCC
TTGCCTGCCTCTGCACTGCCTTCTGAAGGAATAGGATCCTCAATCGATATCTTCCCAGTC
CCATCTTTCGCGATTTCACCACCAGCATCGTTTTCTTTACACTTCAGAACTTCATCAACA
CTGAGGTTTGGATCTTTCTTGTCTGGAGACAAAGAGGCTCCGTGTGCTTCATGATGACCA
TATTGCTGAACTTCTTGCTCAACTTCTTTTGCAACCTGCCTTGCTACTTCAAGCGCATCC
TCCCCATAAAATTCTGAGACTACATCTCCAACATTTGCAGAAGATGGAGACACCTTCAGG
GTACCCGGGCTAGGAAGATCCTTGCTTCCATTCTCCG
■■Homology search results ■■ -
sp_hit_id Q9UNN4
Definition sp|Q9UNN4|TF2AY_HUMAN TFIIA-alpha and beta-like factor OS=Homo sapiens
Align length 60
Score (bit) 31.2
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919536|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_C03.
         (457 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UNN4|TF2AY_HUMAN TFIIA-alpha and beta-like factor OS=Homo s...    31   2.2  
sp|Q5T8A7|K0649_HUMAN Protein KIAA0649 OS=Homo sapiens GN=KIAA06...    31   2.9  
sp|A1S6Q9|THIC_SHEAM Thiamine biosynthesis protein thiC OS=Shewa...    30   4.9  
sp|Q94KE2|TIC_ARATH Protein TIME FOR COFFEE OS=Arabidopsis thali...    30   6.4  
sp|Q8BUH8|SENP7_MOUSE Sentrin-specific protease 7 OS=Mus musculu...    29   8.4  
sp|P0A170|NAHB_PSEU8 1,2-dihydroxy-1,2-dihydronaphthalene dehydr...    29   8.6  
sp|P0A169|NAHB_PSEPU 1,2-dihydroxy-1,2-dihydronaphthalene dehydr...    29   8.6  

>sp|Q9UNN4|TF2AY_HUMAN TFIIA-alpha and beta-like factor OS=Homo
           sapiens GN=GTF2A1L PE=2 SV=1
          Length = 478

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = -3

Query: 278 ASLSPDKKDPNLSVDEVLKCKENDAGGEIAKDGTGKISIEDPIPSEGSAEAGKEERDLDG 99
           +++   +KD N  VD  ++  ++D G  I  DG+G  S  + I S   A+  +   ++DG
Sbjct: 319 SNIPVSEKDSNSQVDLSIRVTDDDIGEIIQVDGSGDTSSNEEIGSTRDADENEFLGNIDG 378


>sp|Q5T8A7|K0649_HUMAN Protein KIAA0649 OS=Homo sapiens GN=KIAA0649
           PE=1 SV=1
          Length = 1209

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 12/77 (15%)
 Frame = -3

Query: 299 GHHEAHGASLSPDKKDPNLSVDEVLKCKENDAGG------------EIAKDGTGKISIED 156
           G +   G   +P  K P    D +L CK    GG            E+ KDG+     +D
Sbjct: 570 GLNSQTGGHKTPLSKTP----DPLLGCKRKRRGGGHVRPSTPKKMQEVVKDGS-----QD 620

Query: 155 PIPSEGSAEAGKEERDL 105
              S+G AE G E RDL
Sbjct: 621 ADHSQGRAEPGHERRDL 637


>sp|A1S6Q9|THIC_SHEAM Thiamine biosynthesis protein thiC
           OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
           GN=thiC PE=3 SV=1
          Length = 664

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = -3

Query: 236 DEVLKCKENDAGGEIAKDGTGKISIEDPIPSEGSAEAGKEERDL----DGIIPVKKDLLD 69
           +E+     N     +A DG   +   D +P    A+AGK    L     GII  + + + 
Sbjct: 104 EELNSASSNFTQQRLADDGLDHLRF-DVLPKPRRAKAGKRVTQLHYARQGIITPEMEYIA 162

Query: 68  VSYNCPKDDVTENQI 24
           +  N  +D+VT+ Q+
Sbjct: 163 IRENMARDEVTDEQL 177


>sp|Q94KE2|TIC_ARATH Protein TIME FOR COFFEE OS=Arabidopsis thaliana
           GN=TIC PE=1 SV=2
          Length = 1550

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
 Frame = -3

Query: 278 ASLSPDKKDPNLSVDEVLKCKENDAGGEIAKDGTG-----------KISIEDPIPSEGSA 132
           ASL  +KK+ NLS DE +  K   + G    DG G           +I +  P P   S+
Sbjct: 444 ASLDSEKKENNLSKDETILPKVESSSG-FRSDGEGAKSSSPEKEKFEIDLMAPPPVRSSS 502

Query: 131 EAGKE 117
           E G E
Sbjct: 503 ERGGE 507


>sp|Q8BUH8|SENP7_MOUSE Sentrin-specific protease 7 OS=Mus musculus
           GN=Senp7 PE=2 SV=1
          Length = 1037

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = -3

Query: 293 HEAHGASLSPDKKDPNLSVDEVLKCKENDAGGEIAKDGTGKISIEDPIPSEGSAEAGKE 117
           H++H +  S DK        E  K +END+      + +G+ S +DP P EG A    E
Sbjct: 303 HDSHNSKTSLDKPT------EHTKEEENDSSVSRKLEESGEDSHQDPAPPEGLAPESLE 355


>sp|P0A170|NAHB_PSEU8 1,2-dihydroxy-1,2-dihydronaphthalene
           dehydrogenase OS=Pseudomonas sp. (strain C18) GN=doxE
           PE=3 SV=1
          Length = 259

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +1

Query: 28  WFSVTSSFGQLYDTSNKSFFTGI 96
           W  ++SSF +++D + KS+F+GI
Sbjct: 99  WEKISSSFDEIFDINVKSYFSGI 121


>sp|P0A169|NAHB_PSEPU 1,2-dihydroxy-1,2-dihydronaphthalene
           dehydrogenase OS=Pseudomonas putida GN=nahB PE=3 SV=1
          Length = 259

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +1

Query: 28  WFSVTSSFGQLYDTSNKSFFTGI 96
           W  ++SSF +++D + KS+F+GI
Sbjct: 99  WEKISSSFDEIFDINVKSYFSGI 121
tr_hit_id Q0V2X1
Definition tr|Q0V2X1|Q0V2X1_PHANO Putative uncharacterized protein OS=Phaeosphaeria nodorum
Align length 80
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919536|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_C03.
         (457 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0V2X1|Q0V2X1_PHANO Putative uncharacterized protein OS=Phaeo...    35   2.4  
tr|Q5R0P0|Q5R0P0_IDILO Pyruvate dehydrogenase (Dihydrolipoyltran...    33   5.4  
tr|B7DBI3|B7DBI3_DESSA Putative uncharacterized protein OS=Desul...    33   7.1  
tr|A8NKZ0|A8NKZ0_COPC7 Predicted protein OS=Coprinopsis cinerea ...    33   7.1  
tr|B7VIK4|B7VIK4_VIBSP Cell division protein zipA homolog OS=Vib...    33   9.3  

>tr|Q0V2X1|Q0V2X1_PHANO Putative uncharacterized protein
           OS=Phaeosphaeria nodorum GN=SNOG_01643 PE=4 SV=2
          Length = 394

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
 Frame = +3

Query: 30  VFCYIILRTVIRHIQQIFLHWNNTI*IPLFLACLCTAF*RNRILNRYLPSPIFRDFTTSI 209
           VF + + RT +       + W   I + LFLAC        R L  Y    +  D  T +
Sbjct: 130 VFVHPVFRTAVLATAFFVIAWGIGITVTLFLAC--------RPLKAYWDITVKGDCLTMV 181

Query: 210 VFFTLQNFIN--TEVWIFLV 263
            F    N  N  T++WIFL+
Sbjct: 182 TFTYFTNISNLITDIWIFLM 201


>tr|Q5R0P0|Q5R0P0_IDILO Pyruvate dehydrogenase
           (Dihydrolipoyltransacetylase component, E2)
           OS=Idiomarina loihiensis GN=aceF PE=3 SV=1
          Length = 591

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 36/165 (21%), Positives = 57/165 (34%), Gaps = 17/165 (10%)
 Frame = -3

Query: 455 ENGSKDLPSPGTLKVSPSSANVGDVVSEFYGEDALXXXXXXXXXXXXXXXQYGHHEAHGA 276
           +  S D+P+    K++     VGD +SE    D L                    E    
Sbjct: 42  DKASMDIPASSGGKITELKVKVGDTISE---GDVLAMIEASGGADESDE---SDSEEEAE 95

Query: 275 SLSPDKKDPNLSVDEVLKC-------KENDAGGEIAKDGTGKISIEDPIPSEGSAE---- 129
             + DK D   + D+  +        K+ D+  E    G G   I+  +P  G  E    
Sbjct: 96  DKTDDKADEEATKDKAEESEDKQEEEKDEDSEPEKKSSGGGSKVIDVEVPDIGDEEDVEI 155

Query: 128 ------AGKEERDLDGIIPVKKDLLDVSYNCPKDDVTENQILLVG 12
                  G      DG+I ++ D   +   CP+D   E  ++ VG
Sbjct: 156 IEILVSKGDSVSAEDGLITLETDKATMDVPCPEDGEIEEMLVKVG 200


>tr|B7DBI3|B7DBI3_DESSA Putative uncharacterized protein
           OS=Desulfovibrio salexigens DSM 2638 GN=DesalDRAFT_0767
           PE=4 SV=1
          Length = 291

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
 Frame = -3

Query: 293 HEAHGASLSPDKKDPNLSVDEVLKCKEN-DAGGEIAKDGTGKISIEDPIPSEGSAEAGKE 117
           +EA G    PD ++  L VDE+ +     D  G+  +D T  + + D + ++  AE    
Sbjct: 153 YEAPGDFARPDPEESALLVDEISEAAALVDFDGDSGEDLTNPVVL-DNLKTKTMAEVLAS 211

Query: 116 ERDLDGIIPVKKDLLDVSYNCPKDDVTENQIL 21
           + DL+G + + +DLL     C   D  + +++
Sbjct: 212 QGDLEGALEIYRDLL-----CKASDEDKEELM 238


>tr|A8NKZ0|A8NKZ0_COPC7 Predicted protein OS=Coprinopsis cinerea
           (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_12454 PE=4
           SV=1
          Length = 248

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 195 FTTSIVFFTLQNFINTEVWIFLV--WRQRGSVCFMMTI 302
           F T  V F    F+++ VWI L   WR  G VCF++T+
Sbjct: 72  FLTGGVTFLANGFLSSRVWIVLPTPWRGIGPVCFLVTL 109


>tr|B7VIK4|B7VIK4_VIBSP Cell division protein zipA homolog OS=Vibrio
           splendidus LGP32 GN=VS_2287 PE=4 SV=1
          Length = 378

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = -3

Query: 275 SLSPDKKDPNLSVDEVLKCKENDAG-GEIAKDGTGKISIEDPIPSEGSAEAGKEERDLDG 99
           ++SP   DP +  D +   ++ DA   EI  +     S+EDPI  +G  E  +EE+ ++ 
Sbjct: 78  AVSPSATDPLIDSDPLSAPQQKDAHEDEIELNDLPSFSVEDPIEVKGELEQVEEEKVVEP 137

Query: 98  IIP 90
            +P
Sbjct: 138 EVP 140