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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919544
Clone id YMU001_000126_C12
Library
Length 375
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000126_C12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGCAGGTACTCGAGTACCTGCGAGAATAAGATGCTGAGAGAGATGCAAGAGGCGGAGGAG
GAGTGGTGTGCTAGAAAACAAAGCCTTGGGTCATCTCTCGCATGCAGGAAGGAAAAGCAC
GAAAAGTGTGGCGAGGTCATCGAGGCTTTGAAGAAACTTCAGGGAAATATGTTACGTCAT
ACTCGAGCACTAGCCACAACATGATATTCAAGGAGCTAAAGAGAGAAAGAGCGCTTGGTG
CTCGCGAGTTGCCAATTCTCTCCTGCCAAACAGTCTTCTACAATGGCAGGAGCAGGAAGA
GGCCATAGCCTAGGTGCTTCCCCTCTCGAAATGGTCGGGAGGGGCTCTATCCAAAGTGGT
TCCCCACTTTCACTG
■■Homology search results ■■ -
sp_hit_id Q3JAN0
Definition sp|Q3JAN0|UVRC_NITOC UvrABC system protein C OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)
Align length 53
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919544|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_C12.
         (375 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3JAN0|UVRC_NITOC UvrABC system protein C OS=Nitrosococcus oc...    31   1.7  
sp|Q6NRE7|CBLBB_XENLA E3 ubiquitin-protein ligase CBL-B-B OS=Xen...    30   3.7  
sp|Q2KIQ2|MNS1_BOVIN Meiosis-specific nuclear structural protein...    30   4.8  
sp|Q27171|DYHC_PARTE Dynein heavy chain, cytoplasmic OS=Parameci...    30   4.8  
sp|Q15696|U2AFM_HUMAN U2 small nuclear ribonucleoprotein auxilia...    29   6.3  
sp|A2AQP0|MYH7B_MOUSE Myosin-7B OS=Mus musculus GN=Myh7b PE=3 SV=1     29   6.3  
sp|Q8IYA2|C144C_HUMAN Coiled-coil domain-containing protein 144C...    29   6.3  
sp|Q15695|U2AFL_HUMAN U2 small nuclear ribonucleoprotein auxilia...    29   8.3  
sp|A7E2Y1|MYH7B_HUMAN Myosin-7B OS=Homo sapiens GN=MYH7B PE=2 SV=2     29   8.3  
sp|Q1RMZ1|CG060_HUMAN UPF0532 protein C7orf60 OS=Homo sapiens GN...    29   8.3  
sp|Q5ZJ87|CG060_CHICK UPF0532 protein C7orf60 homolog OS=Gallus ...    29   8.3  

>sp|Q3JAN0|UVRC_NITOC UvrABC system protein C OS=Nitrosococcus
           oceani (strain ATCC 19707 / NCIMB 11848) GN=uvrC PE=3
           SV=1
          Length = 599

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +3

Query: 138 HRGFEETSGKYVTSYSSTSHNMIFKELKRERALGARELPILSCQTVFYNGRSR 296
           HRG ++ SG+Y   Y +     +++ LK    L  R  P+  C+  FY  RSR
Sbjct: 117 HRGVKQVSGQYFGPYPNI--RSVWQTLK----LLQRVFPVRQCEDNFYRNRSR 163


>sp|Q6NRE7|CBLBB_XENLA E3 ubiquitin-protein ligase CBL-B-B
           OS=Xenopus laevis GN=cblb-B PE=2 SV=1
          Length = 764

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 20/78 (25%), Positives = 31/78 (39%)
 Frame = +1

Query: 1   CRYSSTCENKMLREMQEAEEEWCARKQSLGSSLACRKEKHEKCGEVIEALKKLQGNMLRH 180
           CR+    EN   R+     E WC R  S G+  +  +  H+   ++  +   L G   RH
Sbjct: 583 CRHLHHAENVPCRDQSTPNEAWCTRDLSGGNQPSVCRVTHDGSPKLGVSSSVLNG---RH 639

Query: 181 TRALATT*YSRS*REKER 234
           +R      + R    K R
Sbjct: 640 SRVSTEAGFMRHKHHKRR 657


>sp|Q2KIQ2|MNS1_BOVIN Meiosis-specific nuclear structural protein 1
           OS=Bos taurus GN=MNS1 PE=2 SV=2
          Length = 495

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
 Frame = +1

Query: 22  ENKMLREMQEAEEEWCA------RKQSLGSSLACRKEKHEKCGEVIEALKKLQGNMLRHT 183
           ENK LRE+Q A+EE  A      +++SL      R++  E   E+ E  KKL+   +   
Sbjct: 78  ENKRLRELQLAQEEKLATELAKLKRESLKDE-KLRQQVRENSAELRELEKKLKAAYMNKE 136

Query: 184 RA 189
           RA
Sbjct: 137 RA 138


>sp|Q27171|DYHC_PARTE Dynein heavy chain, cytoplasmic OS=Paramecium
            tetraurelia GN=DHC-8 PE=2 SV=1
          Length = 4540

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 15/59 (25%)
 Frame = +1

Query: 22   ENKMLREMQEAEEEWCARK---------------QSLGSSLACRKEKHEKCGEVIEALK 153
            E  + +++QE EE+W   K               +SL   L   +EK+EKC +  E LK
Sbjct: 1191 ERYLNQQIQEIEEQWKTSKPDSGDCSPNEAEQILKSLNEQLISVQEKYEKCSQAKEILK 1249


>sp|Q15696|U2AFM_HUMAN U2 small nuclear ribonucleoprotein auxiliary
           factor 35 kDa subunit-related protein 2 OS=Homo sapiens
           GN=ZRSR2 PE=1 SV=2
          Length = 482

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 22  ENKML-REMQEAEEEWCARKQSLGSSLACRKEKHE 123
           E K+L RE Q   EEW  R+Q        +KEK E
Sbjct: 60  EEKLLERERQRLHEEWLLREQKAQEEFRIKKEKEE 94


>sp|A2AQP0|MYH7B_MOUSE Myosin-7B OS=Mus musculus GN=Myh7b PE=3 SV=1
          Length = 1941

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 22   ENKMLREMQEAEEEWCARKQSLGSSLACRKEKHEKCGEVIEALKKLQGNM 171
            E +M RE++ A+ E     + LG+ L   +  HE+  E +E LK+   N+
Sbjct: 1467 EEEMQRELEAAQRE----ARGLGTELFRLRHSHEEALEALETLKRENKNL 1512


>sp|Q8IYA2|C144C_HUMAN Coiled-coil domain-containing protein 144C
           OS=Homo sapiens GN=CCDC144C PE=2 SV=3
          Length = 1237

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 115 KHEKCGEVIEALKKLQGNMLRHTRALATT*YSRS*REKE 231
           K E+CG+V+E  ++L+ N+ R  + L T    R+  +K+
Sbjct: 549 KEEECGKVVETKQQLKWNLRRLVKELRTVVQERNDAQKQ 587


>sp|Q15695|U2AFL_HUMAN U2 small nuclear ribonucleoprotein auxiliary
           factor 35 kDa subunit-related protein 1 OS=Homo sapiens
           GN=ZRSR1 PE=2 SV=2
          Length = 479

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 22  ENKML-REMQEAEEEWCARKQSLGSSLACRKEKHEKCGEVIE 144
           E K+L RE +   EEW  R+Q        +KEK E   + +E
Sbjct: 65  EEKLLERERERLHEEWLLREQKAQEEFRIKKEKEEAAKKWLE 106


>sp|A7E2Y1|MYH7B_HUMAN Myosin-7B OS=Homo sapiens GN=MYH7B PE=2 SV=2
          Length = 1941

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 22   ENKMLREMQEAEEEWCARKQSLGSSLACRKEKHEKCGEVIEALKKLQGNM 171
            E +M RE++ A+ E     + LG+ L   +  HE+  E +E LK+   N+
Sbjct: 1467 EEEMQRELEAAQRE----SRGLGTELFRLRHGHEEALEALETLKRENKNL 1512


>sp|Q1RMZ1|CG060_HUMAN UPF0532 protein C7orf60 OS=Homo sapiens
           GN=C7orf60 PE=2 SV=1
          Length = 405

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = +3

Query: 111 GKARKVWRGHRGFEETSGKYVTSYSSTSHNMIFKELKRERALGARELPILSCQTVFYNGR 290
           G   K+WR H   EET  +Y  +  + + N   K  + E   G  E     C+  F NG 
Sbjct: 55  GDFDKIWREHCEDEETLCEYAVAMKNLADNHWAKTCEGE---GRIEWCCSVCREYFQNGG 111

Query: 291 SRK 299
            RK
Sbjct: 112 KRK 114
tr_hit_id A6RC77
Definition tr|A6RC77|A6RC77_AJECN Putative uncharacterized protein OS=Ajellomyces capsulata (strain NAm1 / WU24)
Align length 35
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919544|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_C12.
         (375 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6RC77|A6RC77_AJECN Putative uncharacterized protein OS=Ajell...    36   1.1  
tr|B7DVI3|B7DVI3_9BACL Chromosome segregation protein SMC OS=Ali...    35   1.4  
tr|B6MFY5|B6MFY5_BRAFL Putative uncharacterized protein OS=Branc...    34   3.1  
tr|B4PB87|B4PB87_DROYA GE11466 OS=Drosophila yakuba GN=GE11466 P...    34   4.1  
tr|B7P9B9|B7P9B9_IXOSC Peroxinectin, putative (Fragment) OS=Ixod...    34   4.1  
tr|B6LPG9|B6LPG9_BRAFL Putative uncharacterized protein (Fragmen...    33   7.0  
tr|B6HF53|B6HF53_PENCH Pc20g02930 protein OS=Penicillium chrysog...    33   9.2  
tr|A6SHB0|A6SHB0_BOTFB Predicted protein OS=Botryotinia fuckelia...    33   9.2  
tr|A7IHN3|A7IHN3_XANP2 AAA ATPase OS=Xanthobacter autotrophicus ...    33   9.2  
tr|Q9XIH8|Q9XIH8_ARATH Putative non-LTR retrolelement reverse tr...    33   9.2  

>tr|A6RC77|A6RC77_AJECN Putative uncharacterized protein
           OS=Ajellomyces capsulata (strain NAm1 / WU24)
           GN=HCAG_07235 PE=4 SV=1
          Length = 568

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = +1

Query: 10  SSTCENKMLREMQEAEEEWCARKQSLGSSLACRKE 114
           +++C     ++ QEA E W ARKQSL S +A RKE
Sbjct: 396 NNSCSFVFAKDDQEAHELWSARKQSLWSMMALRKE 430


>tr|B7DVI3|B7DVI3_9BACL Chromosome segregation protein SMC
           OS=Alicyclobacillus acidocaldarius LAA1
           GN=AaLAA1DRAFT_3008 PE=4 SV=1
          Length = 1190

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
 Frame = +1

Query: 25  NKMLREMQEAEEEWCARKQSLGSSLACRKEKHEKCGEVIEALKKLQGNMLRHTRALATT* 204
           N+    ++ +EE W AR+Q+L  + A  +   ++  EV+EA +K +G++      LA   
Sbjct: 256 NEAQERLRLSEEAWKARRQALNEATARLESLQQQYVEVVEARQKAEGSLALAEERLAALA 315

Query: 205 YSRS*REKERLVLAS--CQFSPAKQSSTMAGAGRGHSLG 315
                R + R  LA    +   A ++   A A    +LG
Sbjct: 316 QRAEDRRRRREELARDLAELEAAMEAVARAEAEAAAALG 354


>tr|B6MFY5|B6MFY5_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_281553 PE=4 SV=1
          Length = 254

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 34  LREMQEAEEEWCARKQSLGSSLACRKEKHEKCGEVIEALKKLQGNMLR 177
           L EMQE E +WC   Q +  ++A R+ + EK    I   K++  NM +
Sbjct: 99  LAEMQEEERDWCLTLQEMQQNIAIRRAEEEKAR--IAREKRIAANMAK 144


>tr|B4PB87|B4PB87_DROYA GE11466 OS=Drosophila yakuba GN=GE11466 PE=4
            SV=1
          Length = 1703

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 24/100 (24%), Positives = 42/100 (42%)
 Frame = +1

Query: 13   STCENKMLREMQEAEEEWCARKQSLGSSLACRKEKHEKCGEVIEALKKLQGNMLRHTRAL 192
            S  + ++  E++E  E+   RKQ L   +    ++HEK   ++   ++ +   +     L
Sbjct: 1271 SEIDERLKGELREWREQLVPRKQELNKQIKLAIDQHEKRFGLVANREEFEDQEVMLPAYL 1330

Query: 193  ATT*YSRS*REKERLVLASCQFSPAKQSSTMAGAGRGHSL 312
                  RS R   R      Q+ P  +SS +   G GH L
Sbjct: 1331 RNIYNERSSRMLPRNTFIDPQYIPRSRSSLLMMGGGGHRL 1370


>tr|B7P9B9|B7P9B9_IXOSC Peroxinectin, putative (Fragment) OS=Ixodes
           scapularis GN=IscW_ISCW002680 PE=4 SV=1
          Length = 585

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = -2

Query: 362 EPLWIEPLPTISRGEAPRLWPLPAPAIVEDCLAGENWQLASTKRSFSL*LLEY 204
           +P + + L    RGE  R  PLP P +V   LAG +WQ + T+ +F   LL +
Sbjct: 37  KPAYADGLHQPRRGEYGR--PLPNPRLVSLALAGGSWQTSDTEYTFHTDLLTH 87


>tr|B6LPG9|B6LPG9_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_210175 PE=4 SV=1
          Length = 179

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 34  LREMQEAEEEWCARKQSLGSSLACRKEKHEKCGEVIEALKKLQGNMLR 177
           L EMQE E +WC   Q +  ++A R+ + +K    I   K++  NM +
Sbjct: 62  LAEMQEEERDWCLTLQEMQQNIAIRRAEEDKAR--IAREKRIAANMAK 107


>tr|B6HF53|B6HF53_PENCH Pc20g02930 protein OS=Penicillium
           chrysogenum Wisconsin 54-1255 GN=Pc20g02930 PE=4 SV=1
          Length = 573

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +1

Query: 37  REMQEAEEEWCARKQSLGSSLACRKEKHE 123
           R+ +EA + W ARKQSL S +A RKE  E
Sbjct: 412 RDDREAHDLWSARKQSLWSMMALRKEGSE 440


>tr|A6SHB0|A6SHB0_BOTFB Predicted protein OS=Botryotinia fuckeliana
           (strain B05.10) GN=BC1G_11896 PE=4 SV=1
          Length = 260

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +1

Query: 28  KMLREMQEAEEEWCARKQSLGSSLACRKEKHEKCGEVIEAL 150
           KM++   E EE+W   +++L    A RKE  +K  EV++A+
Sbjct: 117 KMIKVQHEHEEQWWKSREALIERQAARKEGQKKLEEVLKAV 157


>tr|A7IHN3|A7IHN3_XANP2 AAA ATPase OS=Xanthobacter autotrophicus
           (strain ATCC BAA-1158 / Py2) GN=Xaut_2283 PE=4 SV=1
          Length = 511

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 359 PLWIEPLPTISRGEAPRLWPLPAPAIVED 273
           P+ I P+ T +R  +P+L PLP PA  ED
Sbjct: 251 PIHIGPVETSARSTSPKLVPLPEPAAAED 279


>tr|Q9XIH8|Q9XIH8_ARATH Putative non-LTR retrolelement reverse
           transcriptase OS=Arabidopsis thaliana GN=At2g16110 PE=2
           SV=1
          Length = 323

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = -2

Query: 344 PLPTISRGEAPRLWPLPAPAIVEDCLAGENWQLASTK-RSFSL*LLE 207
           PL  ++    PR   +P  A+V D L G+NW L+S++ R+ S+ LL+
Sbjct: 59  PLIDLTGTNGPRSVGMPLNAVVRDALRGDNWWLSSSRSRNPSIALLK 105