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NBDC - LSDB Archive
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BP919545
Clone id YMU001_000126_D01
Library
Length 541
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000126_D01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACTGGTGATAGCCAGAGGTGCTAGGAGTATTTTGGTATACCCTTCGCATATTTTTGACAC
ACGAGACAATGTAGTCTCTGTGTATTTGCAGCCATGTTTAGAGCGAGAGATGAGGCATGT
CTCTTTTACATATGTGTTGCACGGAGAGCAGGTTGTGCATTTATCTTGTGGTGATGTTCA
TGTAGACAGTGGTATCTCTCGGGATGCACATCTTGGTCAGTCATCAGTTTAGGTGACATC
AATTGAGCCAGAGTCCGATGCATTGTTTTATGATGTGTCTGATACGTTTGAGGGGAACAT
TGTCCTTCGGACAACTGTGTGATTGTAGTGGTGCTCATTTTTTGATTTTGCAGTCATTCT
CAGCAGATATCCCTTTGCCAGACGATGCTAACATGGTGATGCATAGTCAGGTGGTTCCTA
ATGAGGATGCATATGGCACTGAGGTTGCTGACAGGGATAGGTTGGCACACATAGTGCATG
TTCCATCGGCTTTTGGGTCCCTCATGTCTGACCTTTTTGTCTCGAGATTTAATCTTGCTT
A
■■Homology search results ■■ -
sp_hit_id Q9W539
Definition sp|Q9W539|HR4_DROME Hormone receptor 4 OS=Drosophila melanogaster
Align length 78
Score (bit) 34.7
E-value 0.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919545|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_D01.
         (541 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9W539|HR4_DROME Hormone receptor 4 OS=Drosophila melanogaste...    35   0.30 
sp|P37039|NCPR_CAVPO NADPH--cytochrome P450 reductase OS=Cavia p...    33   0.69 
sp|P52172|SRP_DROME Box A-binding factor OS=Drosophila melanogas...    32   1.5  
sp|P04929|HRPX_PLALO Histidine-rich glycoprotein OS=Plasmodium l...    30   5.7  
sp|Q91765|FXA2A_XENLA Forkhead box protein A2-A OS=Xenopus laevi...    30   7.5  
sp|P04175|NCPR_PIG NADPH--cytochrome P450 reductase OS=Sus scrof...    30   7.6  
sp|P13378|HXD8_HUMAN Homeobox protein Hox-D8 OS=Homo sapiens GN=...    30   7.6  
sp|Q29KT5|SPIR_DROPS Protein spire OS=Drosophila pseudoobscura p...    30   9.8  
sp|Q2NHG6|THIC2_METST Thiamine biosynthesis protein thiC 2 OS=Me...    30   9.9  
sp|Q29077|ODFP1_PIG Outer dense fiber protein 1 OS=Sus scrofa GN...    30   9.9  
sp|Q14990|ODFP1_HUMAN Outer dense fiber protein 1 OS=Homo sapien...    30   9.9  
sp|Q06518|NOS2_RAT Nitric oxide synthase, inducible OS=Rattus no...    30   9.9  
sp|O19114|NOS2_RABIT Nitric oxide synthase, inducible (Fragment)...    30   9.9  
sp|A2T748|HXD8_PANTR Homeobox protein Hox-D8 OS=Pan troglodytes ...    30   9.9  

>sp|Q9W539|HR4_DROME Hormone receptor 4 OS=Drosophila melanogaster
           GN=Hr4 PE=1 SV=4
          Length = 1518

 Score = 34.7 bits (78), Expect = 0.30
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
 Frame = -3

Query: 341 KMSTTTITQLSEGQCSPQTYQTHHKTMHRTLAQLMSPK--------LMTDQDVHPERYHC 186
           ++S +  TQLS G   P   QTHH  +H+ L Q ++ +        L++    H  +   
Sbjct: 440 RVSASPPTQLSHGSLGPNIVQTHH--LHQQLTQPLTLRKSSPPTEHLLSQSMQHLTQQQA 497

Query: 185 LHEHHHKINAQPALRATH 132
           +H HH     Q   +A+H
Sbjct: 498 IHLHHLLGQQQQQQQASH 515


>sp|P37039|NCPR_CAVPO NADPH--cytochrome P450 reductase OS=Cavia
           porcellus GN=POR PE=2 SV=2
          Length = 678

 Score = 33.5 bits (75), Expect = 0.69
 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = -1

Query: 142 VQHICKRDMPHLSL*TWLQIHRD----YIVSCVKNMRRVYQNT 26
           VQH+ KRD  HL    W  IH D    Y+    +NM R  QNT
Sbjct: 605 VQHLLKRDQEHL----WKLIHEDGAHIYVCGDARNMARDVQNT 643


>sp|P52172|SRP_DROME Box A-binding factor OS=Drosophila melanogaster
           GN=srp PE=1 SV=2
          Length = 1264

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
 Frame = -3

Query: 332 TTTITQLSEGQCSPQTYQTHHKTMHRTLAQLMSPKLMTD--QDVHPERYHCLHEHHHKIN 159
           T T   +  G  SP   Q H +  H    Q    +      Q    + +H  H+HH+  +
Sbjct: 509 TQTANGIQYGMQSPNQTQAHLQQQHHQQQQQQHQQHQQQQLQQQQQQHHHNQHQHHNSSS 568

Query: 158 AQPALRATHM*KRHASSLALNMAA 87
           + P     H    H+SS A   AA
Sbjct: 569 SSPGPAGLH----HSSSSAATAAA 588


>sp|P04929|HRPX_PLALO Histidine-rich glycoprotein OS=Plasmodium
           lophurae PE=4 SV=1
          Length = 351

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 269 KTMHRTLAQLMSPKLMTDQDVHPERYHCLHEHHH 168
           K + +T + L   +++ +  VHPE  H  H HHH
Sbjct: 32  KHIPQTGSNLTFDRVLVEDTVHPEHLHEEHHHHH 65


>sp|Q91765|FXA2A_XENLA Forkhead box protein A2-A OS=Xenopus laevis
           GN=foxa2-A PE=1 SV=1
          Length = 434

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -3

Query: 227 LMTDQDVHPERYHCLHEHHHKINAQPALRATHM*KRHASSLALNMAANT 81
           LM+ +  H   +H  H HHHK++ +   +  H    + S +A ++A +T
Sbjct: 356 LMSSEQQHHHHHHHNHHHHHKMDLKAYEQVMHY-SSYGSPMAGSLAMST 403


>sp|P04175|NCPR_PIG NADPH--cytochrome P450 reductase OS=Sus scrofa
           GN=POR PE=1 SV=2
          Length = 678

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = -1

Query: 142 VQHICKRDMPHLSL*TWLQIH----RDYIVSCVKNMRRVYQNT 26
           VQH+ KRD  HL    W  IH      YI    +NM R  QNT
Sbjct: 605 VQHLLKRDKEHL----WKLIHDGGAHIYICGDARNMARDVQNT 643


>sp|P13378|HXD8_HUMAN Homeobox protein Hox-D8 OS=Homo sapiens
           GN=HOXD8 PE=2 SV=2
          Length = 290

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 459 YPCQQPQCHMHPH*EPPDYASPC*HRLAKG 370
           +P   PQ H HPH  PP   + C  R  +G
Sbjct: 61  FPHAPPQAHAHPHPSPPPSGTGCGGREGRG 90


>sp|Q29KT5|SPIR_DROPS Protein spire OS=Drosophila pseudoobscura
           pseudoobscura GN=spir PE=3 SV=2
          Length = 1096

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 218 DQDVHPERYHCLHEHHHKINAQPALRATH 132
           D + H   +H  H+HHH +++  AL   H
Sbjct: 222 DNNNHEHHHHHHHQHHHPVDSNAALDRAH 250


>sp|Q2NHG6|THIC2_METST Thiamine biosynthesis protein thiC 2
           OS=Methanosphaera stadtmanae (strain DSM 3091) GN=thiC2
           PE=3 SV=1
          Length = 434

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 508 DMRDPKADGTCTMCAN 461
           D R P+AD TCTMC N
Sbjct: 398 DKRPPEADDTCTMCGN 413


>sp|Q29077|ODFP1_PIG Outer dense fiber protein 1 OS=Sus scrofa
           GN=ODF1 PE=2 SV=1
          Length = 262

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -2

Query: 240 DVT*TDD*PRCASREIPLST*TSPQDKCTTCSPCN 136
           DVT +     C   E P    TSP + C  CSPCN
Sbjct: 185 DVTYSYGLGSCVKIESPCYPCTSPCNPCNPCSPCN 219
tr_hit_id B3MTV7
Definition tr|B3MTV7|B3MTV7_DROAN GF23047 OS=Drosophila ananassae
Align length 76
Score (bit) 34.7
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919545|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_D01.
         (541 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3MTV7|B3MTV7_DROAN GF23047 OS=Drosophila ananassae GN=GF2304...    35   3.3  
tr|B4R330|B4R330_DROSI GD16580 OS=Drosophila simulans GN=GD16580...    34   5.6  
tr|B4PV47|B4PV47_DROYA GE23515 OS=Drosophila yakuba GN=GE23515 P...    34   5.6  
tr|B4I9M2|B4I9M2_DROSE GM19185 OS=Drosophila sechellia GN=GM1918...    34   5.6  
tr|A8X6M6|A8X6M6_CAEBR Putative uncharacterized protein OS=Caeno...    34   5.6  
tr|B3NTG0|B3NTG0_DROER GG18108 OS=Drosophila erecta GN=GG18108 P...    27   5.9  
tr|A2TQQ6|A2TQQ6_9FLAO Glucose-1-phosphate thymidylyltransferase...    33   7.3  
tr|Q9VC38|Q9VC38_DROME Ets96B, isoform A OS=Drosophila melanogas...    33   7.3  
tr|Q8MRW5|Q8MRW5_DROME Ets96B, isoform B OS=Drosophila melanogas...    33   7.3  
tr|B3M7D8|B3M7D8_DROAN GF24270 OS=Drosophila ananassae GN=GF2427...    33   7.3  
tr|B4QTS3|B4QTS3_DROSI GD21130 OS=Drosophila simulans GN=GD21130...    33   9.5  
tr|Q4WLV5|Q4WLV5_ASPFU Putative uncharacterized protein OS=Asper...    33   9.5  
tr|B0Y8Q5|B0Y8Q5_ASPFC Putative uncharacterized protein OS=Asper...    33   9.5  

>tr|B3MTV7|B3MTV7_DROAN GF23047 OS=Drosophila ananassae GN=GF23047
           PE=4 SV=1
          Length = 640

 Score = 34.7 bits (78), Expect = 3.3
 Identities = 24/76 (31%), Positives = 32/76 (42%)
 Frame = -3

Query: 335 STTTITQLSEGQCSPQTYQTHHKTMHRTLAQLMSPKLMTDQDVHPERYHCLHEHHHKINA 156
           STTT  Q  +     Q  Q   +       QL   +L     +HP  +H  H H H   A
Sbjct: 307 STTTAAQQQQQHQQQQQQQHQQQQQQHQHQQLQQQQLQHAAALHPHHHH--HGHGHHQQA 364

Query: 155 QPALRATHM*KRHASS 108
           + AL  TH+   HA+S
Sbjct: 365 EQAL--THLTPLHAAS 378


>tr|B4R330|B4R330_DROSI GD16580 OS=Drosophila simulans GN=GD16580
           PE=4 SV=1
          Length = 1340

 Score = 33.9 bits (76), Expect = 5.6
 Identities = 24/91 (26%), Positives = 38/91 (41%)
 Frame = -3

Query: 341 KMSTTTITQLSEGQCSPQTYQTHHKTMHRTLAQLMSPKLMTDQDVHPERYHCLHEHHHKI 162
           ++S +  TQLS G   P   QTHH  +H+ L Q      +T +   P   H L +    +
Sbjct: 506 RVSASPPTQLSHGSLGPNIVQTHH--LHQQLTQ-----PLTLRKSSPPTEHLLSQSMQHL 558

Query: 161 NAQPALRATHM*KRHASSLALNMAANTQRLH 69
             Q A+   H+  +     A +     Q+ H
Sbjct: 559 TQQQAIHLHHLLGQQQQQQASHPQQQQQQQH 589


>tr|B4PV47|B4PV47_DROYA GE23515 OS=Drosophila yakuba GN=GE23515 PE=4
           SV=1
          Length = 649

 Score = 33.9 bits (76), Expect = 5.6
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = -3

Query: 335 STTTITQLSEGQCSPQTYQTHHKTMHRTLAQLMSPKLMTDQDVHPERYHCLHEHH-HKIN 159
           STTT  Q  + Q   Q  Q   +   +   Q    +L     +HP  +H  H HH H+  
Sbjct: 322 STTTAAQQQQQQQQQQHQQQQQQQQQQ---QQQQQQLQQAAALHPHHHHAHHGHHGHQQA 378

Query: 158 AQPALRATHM*KRHASS 108
            Q AL  TH+   HA+S
Sbjct: 379 EQQAL--THLTPLHAAS 393


>tr|B4I9M2|B4I9M2_DROSE GM19185 OS=Drosophila sechellia GN=GM19185
           PE=4 SV=1
          Length = 1131

 Score = 33.9 bits (76), Expect = 5.6
 Identities = 24/91 (26%), Positives = 38/91 (41%)
 Frame = -3

Query: 341 KMSTTTITQLSEGQCSPQTYQTHHKTMHRTLAQLMSPKLMTDQDVHPERYHCLHEHHHKI 162
           ++S +  TQLS G   P   QTHH  +H+ L Q      +T +   P   H L +    +
Sbjct: 603 RVSASPPTQLSHGSLGPNIVQTHH--LHQQLTQ-----PLTLRKSSPPTEHLLSQSMQHL 655

Query: 161 NAQPALRATHM*KRHASSLALNMAANTQRLH 69
             Q A+   H+  +     A +     Q+ H
Sbjct: 656 TQQQAIHLHHLLGQQQQQQASHPQQQQQQQH 686


>tr|A8X6M6|A8X6M6_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG08471 PE=4 SV=1
          Length = 1226

 Score = 33.9 bits (76), Expect = 5.6
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
 Frame = -3

Query: 350 QNQKMSTTTITQL-SEGQCSPQTYQTHHKTMHRTLAQLMSPKLMTDQDVHPE-RYHCLHE 177
           +++K S   + QL SE Q   ++ +  +      L      ++ TD D+ P+ R +C H 
Sbjct: 270 EDRKKSEIVMNQLISEAQLKQESEKRKNMMSVERLE-----RISTDFDLVPQYRNYCPHT 324

Query: 176 HHHKINAQPALRATHM*KRHASSLALNMAANTQRLHCLVCQKYAKGI 36
           HH  I A   +  T     H    + +     ++ +C+ CQ Y KG+
Sbjct: 325 HHFYITAYNLVSET----THHYVFSPDSGQFHRQAYCIYCQDYRKGV 367


>tr|B3NTG0|B3NTG0_DROER GG18108 OS=Drosophila erecta GN=GG18108 PE=4
           SV=1
          Length = 1373

 Score = 26.9 bits (58), Expect(2) = 5.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 456 PCQQPQCHMHPH*EPPDYASPC*H 385
           P   P  H+HPH +PP +  P  H
Sbjct: 623 PPPTPPPHLHPHHQPPPHHHPLPH 646



 Score = 25.4 bits (54), Expect(2) = 5.9
 Identities = 15/54 (27%), Positives = 20/54 (37%)
 Frame = -3

Query: 293 PQTYQTHHKTMHRTLAQLMSPKLMTDQDVHPERYHCLHEHHHKINAQPALRATH 132
           P  +   H   H  L   + P+L   Q  HP      H H H     P ++A H
Sbjct: 647 PHPHPQMHPQPHPPLHPQLHPQLHPHQQPHPPPQPYPHPHPH---PHPGMQAGH 697


>tr|A2TQQ6|A2TQQ6_9FLAO Glucose-1-phosphate thymidylyltransferase
           OS=Dokdonia donghaensis MED134 GN=MED134_09586 PE=4 SV=1
          Length = 339

 Score = 33.5 bits (75), Expect = 7.3
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +3

Query: 363 ADIPLPDDANMVMHSQVVPNEDAYG-TEVADRDRLAHIVHVPSAFGS 500
           AD+ L  +A+ V+ ++ VPN +AYG  ++ ++D +  +V  P  F S
Sbjct: 118 ADLELDPEADSVIWTKKVPNPEAYGVVKLNEKDEIVELVEKPETFVS 164


>tr|Q9VC38|Q9VC38_DROME Ets96B, isoform A OS=Drosophila melanogaster
           GN=Ets96B PE=2 SV=2
          Length = 637

 Score = 33.5 bits (75), Expect = 7.3
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = -3

Query: 335 STTTITQLSEGQCSPQTYQTHHKTMHRTLAQLMSPKLMTDQDVHPERYHCLHEHH-HKIN 159
           STTT  Q  + Q   Q  Q   +   +   QL     +     HP  +H  H HH H+  
Sbjct: 315 STTTAAQQQQQQQEQQQQQQQQQQQQQHQQQLQQAAAL-----HPHHHHSHHGHHGHQQA 369

Query: 158 AQPALRATHM*KRHASS 108
            Q AL  TH+   HA+S
Sbjct: 370 EQQAL--THLTPLHAAS 384


>tr|Q8MRW5|Q8MRW5_DROME Ets96B, isoform B OS=Drosophila melanogaster
           GN=Ets96B PE=2 SV=1
          Length = 640

 Score = 33.5 bits (75), Expect = 7.3
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = -3

Query: 335 STTTITQLSEGQCSPQTYQTHHKTMHRTLAQLMSPKLMTDQDVHPERYHCLHEHH-HKIN 159
           STTT  Q  + Q   Q  Q   +   +   QL     +     HP  +H  H HH H+  
Sbjct: 318 STTTAAQQQQQQQEQQQQQQQQQQQQQHQQQLQQAAAL-----HPHHHHSHHGHHGHQQA 372

Query: 158 AQPALRATHM*KRHASS 108
            Q AL  TH+   HA+S
Sbjct: 373 EQQAL--THLTPLHAAS 387


>tr|B3M7D8|B3M7D8_DROAN GF24270 OS=Drosophila ananassae GN=GF24270
           PE=4 SV=1
          Length = 746

 Score = 33.5 bits (75), Expect = 7.3
 Identities = 23/81 (28%), Positives = 34/81 (41%)
 Frame = -3

Query: 317 QLSEGQCSPQTYQTHHKTMHRTLAQLMSPKLMTDQDVHPERYHCLHEHHHKINAQPALRA 138
           Q  + Q   Q  Q HH   H+   QL   +    Q    +++H    HHH+  AQ A   
Sbjct: 181 QQQQQQAQQQQQQQHHH--HQQQQQLQQQQQQQAQQQQQQQHH----HHHQQQAQTAQAH 234

Query: 137 THM*KRHASSLALNMAANTQR 75
            H  +R  S L+   +  T+R
Sbjct: 235 HHQMRRTPSPLSAGTSPATRR 255